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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_532#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence
[AGACGACGGGGTAAAGAGAATAGTGCTCCTGGCGGAAAGAGAGCGCGCAAAGCTCTCTCTCAAGCTTGGGCAAATGCTTCTCAAGATAATTCCGAAATGAGTTTCGTTGTAGAAACACCCAGTAAAAGTTTGGACACATCGGTATTATTTTCACCGGCATCCATGGCATTGGAAGACAGTTTCTTAACAGCAGGGACTAGTCCCATAAAGACTTCCCACGACTTTGTGTCCGTACAACGGAAGCCTAATGCCAAGAGAGCGATCACATTCGATGCATTCGACAGTCCCTGTTGTATCCTCAGCCCCTTGCCGCTCAGGCCAGTCAAACGTGCTAAGGTACATTTAGAAGCACAATGGGCAACAGTGGCATGTGGACGTACACGCGATCAGCTCGAAATGACGCGAGCTGCTCGACGATTCCTTAGCAGTCATGGATACTTGCCATTACGTCCTCGTTCTTTGAATTTTTGAGAGTCCTTTTGTAAACATGGGGACTCAGTCGCACTACGTGGTACAAAATATGCGACATTAAACTAGTCGTAATTAAAATAATACGGCACTTCCGTTTAAGGAATA]
[+] EMBL BI505554 [AGACGACGGGGTAAAGAGAATAGTGCTCCTGGCGGAAAGAGAGCGCGCAAAGCTCTCTCTCAAGCTTGGGCAAATGCTTCTCAAGATAATTCCGAAATGAGTTTCGTTGTAGAAACACCCAGTAAAAGTTTGGACACATCGGTATTATTTTCACCGGCATCCATGGCATTGGAAGACAGTTTCTTAACAGCAGGGACTAGTCCCATAAAGACTTCCCACGACTTTGTGTCCGTACAACGGAAGCCTAATGCCAAGAGAGCGATCACATTCGATGCATTCGACAGTCCCTGTTGTATCCTCAGCCCCTTGCCGCTCAGGCCAGTCAAACGTGCTAAGGTACATTTAGAAGCACAATGGGCAACAGTGGCATGTGGACGTACACGCGATCAGCTCGAAATGACGCGAGCTGCTCGACGATTCCTTAGCAGTCATGGATACTTGCCATTACGTCCTCGTTCTTTGAATTTTTGAGAGTCCTTTTGTAAACATGGGGACTCAGTCGCACTACGTGGTACAAAATATGCGACATTAAACTAGTCGTAATTAAAATAATACGGCACTTCCGTTTAAGGAATA]
consensusID : consensus_532#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 573 fasta sequence
[TGTAACGGAGAAAGAAAGGAGTAGTCCACCCCCAATTCTACGTCGACGTAAAAATATCCAAATTCTTCAACAGAGGACAGATACTCCTGATAATGTGAACCAGTCTGATTATTTAATAATAAATCAACAGGAACAACAGACTGGTGAGACCACCCCATCCACACCTATTAAACAATTGCCATTCAGTCCGTCACAGTTTTTGAACAGTCTGAGTCCCGAGACATCTTCCTGGCCACGAGCAAGCACTCCTAAAGGCAGCAGCCCTGGTCCACTCACCACACCACAACCTACTGGTCTTCGACGAAGTCAAAATGATGGCAATACGCCGAGGACACCAACACCGTTCAAAAATGCATTGGCAGAATTAGAACGGCGCAGCGGCGCGACTACTCAGTTACCTGCTACCCCCAGTCGTTTAGATGCTCTAACCGAGATCATCAAACAGGAAACCGATCGTGAAAGTTTAGTAGGAACTAGTACTATTCTTCAAGATTCTGGTTACAGTACAATTAGACGACGGGGTAAAGAGAATAGTGCTCCTGGCGGAAAGAGAGCGCGCAAAGCTCTCTCTCA]
[+] EMBL BI505630 [TGTAACGGAGAAAGAAAGGAGTAGTCCACCCCCAATTCTACGTCGACGTAAAAATATCCAAATTCTTCAACAGAGGACAGATACTCCTGATAATGTGAACCAGTCTGATTATTTAATAATAAATCAACAGGAACAACAGACTGGTGAGACCACCCCATCCACACCTATTAAACAATTGCCATTCAGTCCGTCACAGTTTTTGAACAGTCTGAGTCCCGAGACATCTTCCTGGCCACGAGCAAGCACTCCTAAAGGCAGCAGCCCTGGTCCACTCACCACACCACAACCTACTGGTCTTCGACGAAGTCAAAATGATGGCAATACGCCGAGGACACCAACACCGTTCAAAAATGCATTGGCAGAATTAGAACGGCGCAGCGGCGCGACTACTCAGTTACCTGCTACCCCCAGTCGTTTAGATGCTCTAACCGAGATCATCAAACAGGAAACCGATCGTGAAAGTTTAGTAGGAACTAGTACTATTCTTCAAGATTCTGGTTACAGTACAATTAGACGACGGGGTAAAGAGAATAGTGCTCCTGGCGGAAAGAGAGCGCGCAAAGCTCTCTCTCA]
consensusID : consensus_532#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 505 fasta sequence
[GGACGAGCTCACAATATATAGTTTCGTAATTTTTTGAATAACACTAAAGTATGTTCCCATAACCTCTCTATTTCTCTCTAACTATATCCTTTCTATCTCCGTTTCTTTCTCTCTTTATAACTCCTCTTTTTCTCTTTCTTTCAATTATGTCTCTAAAAACTGAAATTTTGATCTTATTATCATATGTTTTTTTTTTCTGGTAAAAAGAAAAAAGAAATAATTTTCAAATGAGCATTTTCTATATGCGTTCTTTTTACTCGCCGGCTGTAGCTAGTGTGTCTATCCTTTCCAGACTTCCCACGACTTTGTGTCCGTACAACGGAAGCCTAATGCCAAGAGAGCGATCACATTCGATGCATTCGACAGTCCCTGTTGTATCCTCAGCCCCTTGCCGCTCAGGCCAGTCAAACGTGCTAAGGTACATTTAGAAGCACAATGGGCAACAGTGGCATGTGGACGTACACGCGATCAGCTCGAAATGACGCGAGCTGCTCGACGATTCCTT]
[+] EMBL BI507400 [GGACGAGCTCACAATATATAGTTTCGTAATTTTTTGAATAACACTAAAGTATGTTCCCATAACCTCTCTATTTCTCTCTAACTATATCCTTTCTATCTCCGTTTCTTTCTCTCTTTATAACTCCTCTTTTTCTCTTTCTTTCAATTATGTCTCTAAAAACTGAAATTTTGATCTTATTATCATATGTTTTTTTTTTCTGGTAAAAAGAAAAAAGAAATAATTTTCAAATGAGCATTTTCTATATGCGTTCTTTTTACTCGCCGGCTGTAGCTAGTGTGTCTATCCTTTCCAGACTTCCCACGACTTTGTGTCCGTACAACGGAAGCCTAATGCCAAGAGAGCGATCACATTCGATGCATTCGACAGTCCCTGTTGTATCCTCAGCCCCTTGCCGCTCAGGCCAGTCAAACGTGCTAAGGTACATTTAGAAGCACAATGGGCAACAGTGGCATGTGGACGTACACGCGATCAGCTCGAAATGACGCGAGCTGCTCGACGATTCCTT]
consensusID : consensus_532#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 274 fasta sequence
[CTTTTTTTTTTTAACAGTAGCATGTGGACGTACACGCGATCAGCTCGAAATGACGCGAGCTGCTCGACGATTCCTTAGCAGTCATGGATACTTGCCATTACGTCCTCGTTCTTTGAATTTTTGAGAGTCCTTTTGTAAACATGGGGACTCAGTCGCACTACGTGGTACAAAATATGCGACATTAAACTAGTCGTAATTAAAATAATACGGCACTTCCGTTTAAGGAATATAGCCTTTTTCTATCAAATTTATCACACGANNNAAAAAAAAAAAA]
[+] EMBL BI508703 [CTTTTTTTTTTTAACAGTAGCATGTGGACGTACACGCGATCAGCTCGAAATGACGCGAGCTGCTCGACGATTCCTTAGCAGTCATGGATACTTGCCATTACGTCCTCGTTCTTTGAATTTTTGAGAGTCCTTTTGTAAACATGGGGACTCAGTCGCACTACGTGGTACAAAATATGCGACATTAAACTAGTCGTAATTAAAATAATACGGCACTTCCGTTTAAGGAATATAGCCTTTTTCTATCAAATTTATCACACGANNNAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_532#0 AGACGACGGGGTAAAGAGAATAGTGCTCCTGGCGGAAAGAGAGCGCGCAAAGCTCTCTCT 60
consensus_532#3 ------------------------------------------------------------
consensus_532#2 ------------------------------------------------------------
consensus_532#1 ------------------------TGTAACGGAGAAAGAAAGGAGTAGTCCACCCCCAAT 36
consensus_532#0 CAAGCTTGGGCAAATGCTTCTCAAGATAATTCCGAAATGAGTTTCGTTGTAGAAACACCC 120
consensus_532#3 ------------------------------------------------------------
consensus_532#2 ------------------------------------------------------------
consensus_532#1 TCTACGTCGACGTAAAAATATCCAAATT-CTTCAACAGAGGACAGATACTCCTGATAATG 95
consensus_532#0 AGTAAAAGTTTGGACACATCGGTATTATTTTCACCGGCATCCATGGCATTGGAAGACAGT 180
consensus_532#3 ------------------------------------------------------------
consensus_532#2 -----------------------------------------------GGACGAGCTCACA 13
consensus_532#1 TGAACCAGTCTGATTAT-TTAATAATAAATCAACAGGAACAACAGACTGGTGAGACCACC 154
consensus_532#0 TTCTTAACAGCAGGGACTAGTCCCATAAAGACTTCCCACGACTTTGTGTCCGTACAACGG 240
consensus_532#3 ------------------------------------------------------------
consensus_532#2 ATATATAGTTTCGTAATTTTTTGAATAACACTAAAGTATGTTCCCATAACCTCTCTATTT 73
consensus_532#1 CCATCCACACCT---ATTAAAC-AATTGCCATTCAGTCCGTCACAGTTTTTGAACAGTCT 210
consensus_532#0 AAGCCTAATGCCAAGAGAGCGATCACATTCGATGCATTC----GACAGTCCCTGTTGTAT 296
consensus_532#3 ------------------------------------------------------------
consensus_532#2 CTCTCTAACTATATCCTTTCTATCTCCGTTTCTTTCTCT----CTTTATAACTCCTCTTT 129
consensus_532#1 GAGTCCCGAGACATCTTCCTGGCCACGAGCAAGCACTCCTAAAGGCAGCAGCCCTGGTCC 270
consensus_532#0 CCTCAGCCCCTTGCCGCTCAGGCCAGTCAAACGTGCTAAGGTACATTTAGAAGCACAATG 356
consensus_532#3 ---------------------------------------------------CTTTTTTTT 9
consensus_532#2 TTCTCTTTCTTTCAATTATGTCTCTAAAAACTGAAATTTTGATCTTATTATCATATGTTT 189
consensus_532#1 ACTCACCACACCACAACCTACTGGTCTTCGACGAAGTCAAAATGATGGCAATACGCCGAG 330
consensus_532#0 GGCAACAGTGGCATGTGGACGTACACGCGATCAGCTCGAAATGACGCGAGCTGCTCGACG 416
consensus_532#3 TTTAACAGTAGCATGTGGACGTACACGCGATCAGCTCGAAATGACGCGAGCTGCTCGACG 69
consensus_532#2 TTTTTTTCTGGTAAAAAGA--AAAAAGAAATAATTTTCAAATGA-GC-ATTTTCTATATG 245
consensus_532#1 GACACCAACACCGTTCAAAAATGCAT-TGGCAGAATTAGAACGGCGC-AGCGGCGCGACT 388
* * * ** * ** * * *
consensus_532#0 ATTCC-TTAGCAGTCATGGATACTTGCCATTACGTCC-TCGTTCTTTGAATTTTTGAGAG 474
consensus_532#3 ATTCC-TTAGCAGTCATGGATACTTGCCATTACGTCC-TCGTTCTTTGAATTTTTGAGAG 127
consensus_532#2 CGTTC-TTTTTACTCGCCGGCTGTAGCTAGTGTGTCTATCCTTTCCAGACTTCCCACGAC 304
consensus_532#1 ACTCAGTTACCTGCTACCCCCAGTCGTTTAGATGCTCTAACCGAGATCATCAAACAGGAA 448
* ** * * * * **
consensus_532#0 TCCTTTTGTAAACATG-GGGACTCAGTCGCACTACGTGGTACAAAATATGCGACATTA-A 532
consensus_532#3 TCCTTTTGTAAACATG-GGGACTCAGTCGCACTACGTGGTACAAAATATGCGACATTA-A 185
consensus_532#2 TTTGTGTCCGTACAAC-GGAAGCCTAATGCCAAGAGAGCGATCACATTCGATGCATTC-G 362
consensus_532#1 ACCGATCGTGAAAGTTTAGTAGGAACTAGTACTATTCTTCAAGATTCTGGTTACAGTACA 508
* * * * * * * ** *
consensus_532#0 ACTAGTCGTAATTAAAATAATACGGCACTTCCGTTTAAGGAATA---------------- 576
consensus_532#3 ACTAGTCGTAATTAAAATAATACGGCACTTCCGTTTAAGGAATATAGCCTTTTTCTATCA 245
consensus_532#2 AC-AGTCCCTGTTGTATCCTCAGCCCCTTGCCGCTCAGGCCAGTCAAACGTGCTAAGGTA 421
consensus_532#1 ATTAGACG--ACGGGGTAAAGAGAATAGTGCTCCTGGCGGAAAGAGAGCGCGCAAAGCTC 566
* ** * * * * * * *
consensus_532#0 ------------------------------------------------------------
consensus_532#3 AATTTATCA-CACGANNNAAAAAAAAAAAA------------------------------ 274
consensus_532#2 CATTTAGAAGCACAATGGGCAACAGTGGCATGTGGACGTACACGCGATCAGCTCGAAATG 481
consensus_532#1 TCTCTCA----------------------------------------------------- 573
consensus_532#0 ------------------------
consensus_532#3 ------------------------
consensus_532#2 ACGCGAGCTGCTCGACGATTCCTT 505
consensus_532#1 ------------------------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |