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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_54#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 847 fasta sequence
[GCCATGTCTTCTTTGGCCCAGAATTCCTTTTCCGAAAATACGACCAGCGGAAAAAACGTCTAAGGGGTACGTTCGATGGTGCACAAAGTGCACAGGATGGAGGAGGAATGCTCTCAAGAGAATAAAAAAGTTGAGACAACGATGCAGACTACGGTCGCGGTAGCGAATACCTCATCAGATGATGTTTGTAACGCACGGGCACGTGTATCTTGCCAAGAAGAGTTTACATGTTCTTTGTATATCTCGCGTGCTGTCGGGCCGCAAGGTCAAGTGCAAGGAATACAAAGTGGCAAGTTGCTACTTATTTAATGAATTTTCCACTTTTATATGTGATTTCATATTATATATAATGTATATATATATATATATATATATATATATATATACATTTGTAAAATGATTTTTTAATTNNTTCTTTTTTTTTCTTTTTTGAAGCGATAACTTTCTTTAATTAACACAATCGGTATTTGTTATTATATTGATAGGAAAATTTCTTCGTTNNTATATATATGAGAAATGCTTTTTTTCTCAACATAAGTTGTTTAAAACAATAGTTTCCCTACTTTTCCTTGATATTTTGAACTTGTTAGACTTGACGAATAAGTTATGCCAGNNNGCGAGCTGCTACGTTCTAATCTAAAAGAGGTAATCCGCGCATCCGACCCCTTAGCAGCCTGGCACGTGTCTGAAACACCTTGTGGTTTGATTGCGGCATTTACTTGCGAAGCTGATGCAAAAAAATTGTTGCAACGTGGCGATTTGGCACGTGTTTTCGAAGGACCTGTACAAGTATTTATTATCCTATCCATTCCAATTCCTTATTTGTAATTTATACATATATATATAT]
[+] EMBL BI507949 [GCCATGTCTTCTTTGGCCCAGAATTCCTTTTCCGAAAATACGACCAGCGGAAAAAACGTCTAAGGGGTACGTTCGATGGTGCACAAAGTGCACAGGATGGAGGAGGAATGCTCTCAAGAGAATAAAAAAGTTGAGACAACGATGCAGACTACGGTCGCGGTAGCGAATACCTCATCAGATGATGTTTGTAACGCACGGGCACGTGTATCTTGCCAAGAAGAGTTTACATGTTCTTTGTATATCTCGCGTGCTGTCGGGCCGCAAGGTCAAGTGCAAGGAATACAAAGTGGCAAGTTGCTACTTATTTAATGAATTTTCCACTTTTATATGTGATTTCATATTATATATAAAAAAAAAAAA ]
[+] EMBL BI516016 [ GACCAGCGGAAAAAACGTCTAAGGGGTACGTTCGATGGTGCACAAAGTGCACAGGATGGAGGAGGAATGCTCTCAAGAGAATAAAAAAGTTGAGACAACGATGCAGACTACGGTCGCGGTAGCGAATACCTCATCAGATGACGTTTGTAACGCACGGGCACGTGTATCTTGCCAAGAAGAGTTTACATGTTCTTTGTATATCTCGCGTGCTGTCGGGCCGCAAGGTCAAGTGCAAGGAATACAAAGTGGCAAGTTGCTACTTATTTAATGAATTTTCCACTTTTATATGTGATTTCATATTATATATAATGTATATATATATATATATATATATATATATATATACATTTGTAAAATGATTTTTTAATTGTTTCTTTTTTTTTCTTTTTTGAAGCGATAACTTTCTTTAATTAACACAATCGGTATTTGTTATTATATTGATAGGAAAATTTCTTCGTTNNNATATATATGAGAAATGCTTTTTTTCTCAACATAAGTTGTTTAAAACAATAGTTTCCCTACTTTTCCT ]
[+] EMBL BI507234 [ GAAAAAACGTCTAAGGGGTACGTTCGATGGTGCACAAAGTGCACAGGATGGAGGAGGAATGCTCTCAAGAGAATAAAAAAGTTGAGACAACGATGCAGACTACGGTCGCGGTAGCGAATACCTCATCAGATGATGTTTGTAACGCACGGGCACGTGTATCTTGCCAAGAAGAGTTTACATGTTCTTTGTATATCTCGCGTGCTGTCGGGCCGCAAGGTCAAGTGCAAGGAATACAAAGTGGCAAGTTGCTACTTATTTAATGAATTTTCCACTTTTATATGTGATTTCATATTATATATAATGTATATATATATATATATATACAT TATATATAatat ]
[+] EMBL BI516948 [ ACGTTCGATGGTGCACAAAGTGCACAGGATGGAGGAGGAATGCTCTCAAGAGAATAAAAAAGTTGAGACAACGATGCAGACTACGGTCGCGGTAGCGAATACCTCATCAGATGATGTTTGTAACGCACGGGCACGTGTATCCTGCCAAGAAGAGTTTACATGTTCTTTGTATATCTCGCGTGCTGTCGGGCCGCAAGGTCAAGTGCAAGGAATACAAAGTGGCAAGTTGCTACTTATTTAATGAATTTTCCACTTTTATATGTGATTTCATATTATATATAATG TATATATATATATATATATATATATATACATTTGTAAAATGATTTTTTAATTNNTTCTTTTTTTTTCTTTTTTGAAGCGATAACTTTCTTTAATTAACACAATCGGTATTTGTTATTATATTGATAGGAAAATTTCTTCGTTNNTATATATATGAGAAATGCTTTTTTTCTCAACATAAGTTGTTTAAAACAATAGTTTCCCTACTTTTCC ]
[+] EMBL BI514538 [ TTTTTTTTTTTTGAAGCGATAACTTTCTTTAATTAACACAATCGGTATTTGTTATTATATTGATAGGAAAATTTCTTCGTTGTTATATATATGAGAAATGCTTTTTTTCTCAACATAAGTTGTTTAAAACAATAGTTTCCCTACTTTTCCTTGATATTTTGAACTTGTTAGACTTGACGAATAAGTTATGCCAGNNNGCGAGCTGCTACGTTCTAATCTAAAAGAGGTAATCCGCGCATCCGACCCCTTAGCAGCCTGGCACGTGTCTGAAACACCTTGTGGTTTGATTGCGGCATTTACTTGCGAAGCTGATGCAAAAAAATTGTTGCAACGTGGCGATTTGGCACGTGTTTTCGAAGGACCTGTACAAGTATTTATTATCCTATCCATTCCAATTCCTTATTTGTAATTTATACATATATATATAT]
consensusID : consensus_54#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 569 fasta sequence
[AAAAAACGTCTAAGGGGTACGTTCGATGGTGCACAAAGTGCACAGGATGGAGGAGGAATGCTCTCAAGAGAATAAAAAAGTTGAGACAACGATGCAGACTACGGTCGCGGTAGCGAATACCTCATCAGATGATGTTTGTAACGCACGGGCACGTGTATCTTGCCAAGAAGAGTTTACATGTTCTTTGTATATCTCGCGTGCTGTCGGGCCGCAAGGTCAAGTGCAAGGAATACAAAGTGGTGGCTCGATTTTCAGCGAAAGATTCTCGTTATAGACAAGCGGTTCTTCTTCGCGATGTACCCTGGGCTATTCCTTTACAGGATATCAATTCTGCATTAATGAAACAGGGAATTGCAACAGGAAGCGTTGAACGTTGGCGACAATATATACGCGTTGAGGTGTTAGATGCTGGACATTACGAACTCTTATTGCGTCAAGGACTGGACTTTTTCGGTGCAGCCCGATTCAGTGCCATCCCNNNGCGTTGGTGGCGCGGAGGAACCGGAAGTACTGGTGGACCGCTGCAGGCAGGGCCAGGAATAGTCAGCAACTTTCTCGAAACATCTAAT]
[+] EMBL BI509157 [AAAAAACGTCTAAGGGGTACGTTCGATGGTGCACAAAGTGCACAGGATGGAGGAGGAATGCTCTCAAGAGAATAAAAAAGTTGAGACAACGATGCAGACTACGGTCGCGGTAGCGAATACCTCATCAGATGATGTTTGTAACGCACGGGCACGTGTATCTTGCCAAGAAGAGTTTACATGTTCTTTGTATATCTCGCGTGCTGTCGGGCCGCAAGGTCAAGTGCAAGGAATACAAAGTGGTGGCTCGATTTTCAGCGAAAGATTCTCGTTATAGACAAGCGGTTCTTCTTCGCGATGTACCCTGGGCTATTCCTTTACAGGATATCAATTCTGCATTAATGAAACAGGGAATTGCAACAGGAAGCGTTGAACGTTGGCGACAATATATACGCGTTGAGGTGTTAGATGCTGGACATTACGAACTCTTATTGCGTCAAGGACTGGACTTTTTCGGTGCAGCCCGATTCAGTGCCATCCCNNNGCGTTGGTGGCGCGGAGGAACCGGAAGTACTGGTGGACCGCTGCAGGCAGGGCCAGGAATAGTCAGCAACTTTCTCGAAACATCTAAT]
[+] EMBL BI504932 [AAAAAACGTCTAAGGGGTACGTTCGATGGTGCACAAAGTGCACAGGATGGAGGAGGAATGCTCTCAAGAGAATAAAAAAGTTGAGACAACGATGCAGACTACGGTCGCGGTAGCGAATACCTCATCAGATGATGTTTGTAACGCACGGGCACGTGTATCTTGCCAAGAAGAGTTTACATGTTCTTTGTATATCTCGCGTGCTGTCGGGCCGCAAGGTCAAGTGCAAGGAATACAAAGTGGTGGCTCGATTTTCAGCGAAAGATTCTCGTTATAGACAAGCGGTTCTTCTTCGCGATGTACCCTGGGCTATTCCTTTACAGGATATCAATTCTGCATTAATGAAACAGGGAATTGCAACAGGAAGCGTTGAACGTTGGCGACAATATATACGCGTTGAGGTGTTAGATGCTGGACATTACGAACTCTTATTGCGTCAAGGACTGGACTTTTTCGGTGCAGCCCGATTCAGTGCCATCCCAGAGCGTTGGTGGCGCGGAGGAACCGGAAG ]
consensusID : consensus_54#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 527 fasta sequence
[GAAAAAACGTCTAAGGGGTACGTTCGATGGTGCACAAAGTGCACAGGATGGAGGAGGAATGCTCTCAAGAGAATAAAAAAGTTGAGACAACGATGCAGACTACGGTCGCGGTAGCGAATACCTCATCAGATGATGTTTGTAACGCACGGGCACGTGTATCTTGCCAAGAAGAGTTTACATGTTCTTTGTATATCTCGCGTGCTGTCGGGCCGCAAGGTCAAGTGCAAGGAATACAAAGTGGCAAGTTGCTACTTATTTAATGAATTTTCCACTTTTATATGTGATTTCATATTATATATAATGTATATATATATATATATATACATTTGTAAAATGATTTTTTAATTGTTGCTTTTTTTTTTTTTTTTGAAGCGATAACTTTCTTTAATTAACACAATCGNNNTTTGTTATTATATTGATAGGAAAATTTCTTCGTTNNTATATATATGAGAAATGCTTTTTTTCTCAACATAAGTTGTTTAAAACAATAGTTTCCCTACTTTTCCTTGATATTTTGAACTTGTTAG]
[+] EMBL BI515093 [GAAAAAACGTCTAAGGGGTACGTTCGATGGTGCACAAAGTGCACAGGATGGAGGAGGAATGCTCTCAAGAGAATAAAAAAGTTGAGACAACGATGCAGACTACGGTCGCGGTAGCGAATACCTCATCAGATGATGTTTGTAACGCACGGGCACGTGTATCTTGCCAAGAAGAGTTTACATGTTCTTTGTATATCTCGCGTGCTGTCGGGCCGCAAGGTCAAGTGCAAGGAATACAAAGTGGCAAGTTGCTACTTATTTAATGAATTTTCCACTTTTATATGTGATTTCATATTATATATAATGTATATATATATATATATATACATTTGTAAAATGATTTTTTAATTGTTGCTTTTTTTTTTTTTTTTGAAGCGATAACTTTCTTTAATTAACACAATCGNNNTTTGTTATTATATTGATAGGAAAATTTCTTCGTTNNTATATATATGAGAAATGCTTTTTTTCTCAACATAAGTTGTTTAAAACAATAGTTTCCCTACTTTTCCTTGATATTTTGAACTTGTTAG]
consensusID : consensus_54#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 474 fasta sequence
[CGGAAAAAACGTCTAAGGGGTACGTTCGATGGTGCACAAAGTGCACAGGATGGAGGAGGAATGCTCTCAAGAGAATAAAAAAGTTGAGACAACGATGCAGACTACGGTCGCGGTAGCGAATACCTCATCAGATGACGTTTGTAACGCACGGGCACGTGTATCTTGCCAAGAAGAGTTTACATGTTCTTTGTATATCTCGCGTGCTGTCGGGCCGCAAGGTCAAGTGCAAGGAATACAAAGTGGTGGCGAGCTGCTACGTTCTAATCTAGAAGAGGTAATCCGCGCATCCGACCCCTTNNCAGCCTGGCACGTGTCTGAAACACCTTGTGGTTTGATTGCGGCATTTACTTGCGAAGCTGATGCAGAAAAATTGTTGCAACGTGGCGATTTGGCACGTGTTTTCGAAGGACCTGTACAAGTATTTATTATCCTATCCATTCCAATTCCTTATTTGTAATTTATACATATATATAT]
[+] EMBL BI512143 [CGGAAAAAACGTCTAAGGGGTACGTTCGATGGTGCACAAAGTGCACAGGATGGAGGAGGAATGCTCTCAAGAGAATAAAAAAGTTGAGACAACGATGCAGACTACGGTCGCGGTAGCGAATACCTCATCAGATGACGTTTGTAACGCACGGGCACGTGTATCTTGCCAAGAAGAGTTTACATGTTCTTTGTATATCTCGCGTGCTGTCGGGCCGCAAGGTCAAGTGCAAGGAATACAAAGTGGTGGCGAGCTGCTACGTTCTAATCTAGAAGAGGTAATCCGCGCATCCGACCCCTTNNCAGCCTGGCACGTGTCTGAAACACCTTGTGGTTTGATTGCGGCATTTACTTGCGAAGCTGATGCAGAAAAATTGTTGCAACGTGGCGATTTGGCACGTGTTTTCGAAGGACCTGTACAAGTATTTATTATCCTATCCATTCCAATTCCTTATTTGTAATTTATACATATATATAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_54#0 GCCATGTCTTCTTTGGCCCAGAATTCCTTTTCCGAAAATACGACCAGCGGAAAAAACGTC 60
consensus_54#2 -------------------------------------------------GAAAAAACGTC 11
consensus_54#3 -----------------------------------------------CGGAAAAAACGTC 13
consensus_54#1 --------------------------------------------------AAAAAACGTC 10
**********
consensus_54#0 TAAGGGGTACGTTCGATGGTGCACAAAGTGCACAGGATGGAGGAGGAATGCTCTCAAGAG 120
consensus_54#2 TAAGGGGTACGTTCGATGGTGCACAAAGTGCACAGGATGGAGGAGGAATGCTCTCAAGAG 71
consensus_54#3 TAAGGGGTACGTTCGATGGTGCACAAAGTGCACAGGATGGAGGAGGAATGCTCTCAAGAG 73
consensus_54#1 TAAGGGGTACGTTCGATGGTGCACAAAGTGCACAGGATGGAGGAGGAATGCTCTCAAGAG 70
************************************************************
consensus_54#0 AATAAAAAAGTTGAGACAACGATGCAGACTACGGTCGCGGTAGCGAATACCTCATCAGAT 180
consensus_54#2 AATAAAAAAGTTGAGACAACGATGCAGACTACGGTCGCGGTAGCGAATACCTCATCAGAT 131
consensus_54#3 AATAAAAAAGTTGAGACAACGATGCAGACTACGGTCGCGGTAGCGAATACCTCATCAGAT 133
consensus_54#1 AATAAAAAAGTTGAGACAACGATGCAGACTACGGTCGCGGTAGCGAATACCTCATCAGAT 130
************************************************************
consensus_54#0 GATGTTTGTAACGCACGGGCACGTGTATCTTGCCAAGAAGAGTTTACATGTTCTTTGTAT 240
consensus_54#2 GATGTTTGTAACGCACGGGCACGTGTATCTTGCCAAGAAGAGTTTACATGTTCTTTGTAT 191
consensus_54#3 GACGTTTGTAACGCACGGGCACGTGTATCTTGCCAAGAAGAGTTTACATGTTCTTTGTAT 193
consensus_54#1 GATGTTTGTAACGCACGGGCACGTGTATCTTGCCAAGAAGAGTTTACATGTTCTTTGTAT 190
** *********************************************************
consensus_54#0 ATCTCGCGTGCTGTCGGGCCGCAAGGTCAAGTGCAAGGAATACAAAGTGGCAAGTTGCTA 300
consensus_54#2 ATCTCGCGTGCTGTCGGGCCGCAAGGTCAAGTGCAAGGAATACAAAGTGGCAAGTTGCTA 251
consensus_54#3 ATCTCGCGTGCTGTCGGGCCGCAAGGTCAAGTGCAAGGAATACAAAGTGGTGGCGAGCTG 253
consensus_54#1 ATCTCGCGTGCTGTCGGGCCGCAAGGTCAAGTGCAAGGAATACAAAGTGGTGGCTCGATT 250
************************************************** * *
consensus_54#0 CTTATTTAATGAATTTTCCACTTTTATATGTGATTTCATATTAT-ATATAATGTATATAT 359
consensus_54#2 CTTATTTAATGAATTTTCCACTTTTATATGTGATTTCATATTAT-ATATAATGTATATAT 310
consensus_54#3 CT-ACGTTCTAATCTAGAAGAGGTAATCCGCGCATCCGACCCCT-TNNCAGCCTG-GCAC 310
consensus_54#1 TTCA-GCGAAAGATTCTCGTTATAGACAAGCGGTTCTTCTTCGCGATGTACCCTGGGC-T 308
* * * * * * * * *
consensus_54#0 ATATATATATATATATATATATATATACATTTGTAAAATGATTTTTTAAT------TNNT 413
consensus_54#2 ATATATATATATA--------------CATTTGTAAAATGATTTTTTAAT------TGTT 350
consensus_54#3 GTGTCTGAA-ACA---------------CCTTGTGG--------TTTGAT------TGCG 340
consensus_54#1 ATTCCTTTACAGGATATCAATTCTGCATTAATGAAACAGGGAATTGCAACAGGAAGCGTT 368
* * * * ** * *
consensus_54#0 TCTT-TTTTTTTCTTTTTTGAAGCGATAACTTTCTTTAATTAACACAAT-C-GGTATTTG 470
consensus_54#2 GCTT-TTTTTTTTTTTTTTGAAGCGATAACTTTCTTTAATTAACACAAT-C-GNNNTTTG 407
consensus_54#3 GCAT-TTACTTGCGAAGCTGATGCAGAAAAATTGTTGCAACGTGGCGAT-TTGGCACGTG 398
consensus_54#1 GAACGTTGGCGACAATATATACGCGTTGAGGTGTTAGATGCTGGACATTACGAACTCTTA 428
** * ** * * * * * *
consensus_54#0 TTATTATATTGATAGGAAAATTTCTTCGTTNNTATATATA-TGAGAAATGCTTTTTTTCT 529
consensus_54#2 TTATTATATTGATAGGAAAATTTCTTCGTTNNTATATATA-TGAGAAATGCTTTTTTTCT 466
consensus_54#3 TT-TTCGAAGGACCTGTACAAGTATTTATTATCCTATCCA-TTCCAATTCCTTATTT--- 453
consensus_54#1 TTGCGTCAAGGACTGGACTTTTTCGGTGCAGCCCGATTCAGTGCCATCCCNNNGCGTTGG 488
** * ** * * ** * * * *
consensus_54#0 CAACATAAGTTGTTTAAAACAATAGTTTCCCTACTTTTCCTTGATATTTTGAACTTGTTA 589
consensus_54#2 CAACATAAGTTGTTTAAAACAATAGTTTCCCTACTTTTCCTTGATATTTTGAACTTGTTA 526
consensus_54#3 ----GTAATTTATACATATATATAT----------------------------------- 474
consensus_54#1 TGGCGCGGAGGAACCGGAAGTACTGGTGGACCGCT--GCAGGCAGGGCCAGGAATAGTCA 546
* *
consensus_54#0 GACTTGACGAATAAGTTATGCCAGNNNGCGAGCTGCTACGTTCTAATCTAAAAGAGGTAA 649
consensus_54#2 G----------------------------------------------------------- 527
consensus_54#3 ------------------------------------------------------------
consensus_54#1 GCAACTTTCTCGAAACATCTAAT------------------------------------- 569
consensus_54#0 TCCGCGCATCCGACCCCTTAGCAGCCTGGCACGTGTCTGAAACACCTTGTGGTTTGATTG 709
consensus_54#2 ------------------------------------------------------------
consensus_54#3 ------------------------------------------------------------
consensus_54#1 ------------------------------------------------------------
consensus_54#0 CGGCATTTACTTGCGAAGCTGATGCAAAAAAATTGTTGCAACGTGGCGATTTGGCACGTG 769
consensus_54#2 ------------------------------------------------------------
consensus_54#3 ------------------------------------------------------------
consensus_54#1 ------------------------------------------------------------
consensus_54#0 TTTTCGAAGGACCTGTACAAGTATTTATTATCCTATCCATTCCAATTCCTTATTTGTAAT 829
consensus_54#2 ------------------------------------------------------------
consensus_54#3 ------------------------------------------------------------
consensus_54#1 ------------------------------------------------------------
consensus_54#0 TTATACATATATATATAT 847
consensus_54#2 ------------------
consensus_54#3 ------------------
consensus_54#1 ------------------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |