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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_56#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1180 fasta sequence
[GGATAACGCGGAAGGCATGCCTGGTACGAGGAACGCGCCACCTCGTCGAAACGGCTCCCACGCGGACGCAGACACTTTTCCGCGAACAAAGGGAAGGAGAGTGTACACGCGTAGAGAGGTATTGTTATTCCTCTTCTCCCTATTCGCCTTCTTATCCTTTCGCCTTACGTCGTGAAAAATTGTGTTTTTTCTCAGCATCGATCGACGCGGTATCGCGACGCCTCGTTTGAAAAAAACGGTTGAAAAACGAGCCTCGTGGCTCGTCGCGAAAAACCTCGCGCGATGTTTCTACCAGGCAGAAGGATAATCCGAGCGGGAATTGCAACTCGACGATTCAA--ATATATATATACACATATATTCGTCTCTGAGAGAAGACTAATTTAATCGATAGATCGTATTATTGTTGTTGTTGTTATTATTGTTATAAAATCGTCGTACGTAGGGCGCGATTTGTTTTTGTTTTGCGAATATTATTATTATTATAACACGGAACGGAAANNNATGGGAAAAAGGACGAACGCGAATTTCGAAATGTACGAAATCAGACGAGAGAAAGGGGGCGAGGAGGGGGTGACCGAAGAAGAAGCGTGACGCGTGCACGTCGATCGCGCGTTAAAAAGGTTTCTGTTCGTACAAGCGTGAACATTAGTTCGCGAAAACAAAGCATCGAAATCGTTGGAGAGAGGATGGACGATGCGTCGACGACTCGCGGTCCAGCCACGCGAAAAGAGAGATTTAATCACTTTAACAACTCGAAGGAATCGAAGGAAGCTCACGTTTCACGATTAACGCTGTAGTCACGATTATTGTCCTGTAACACGCATCCCCGATTTTCCGTCCTCTCCTTTTTCACTGCGTCACGTTCTTCCTCTCTCGTCGCTTTTCTCCTCTTTCGTCTTCCGTGTGACATAAGCTTGGATCGGTGTAGAGAGAGCAGTTTTTCCAACCGTGTAACAAAATATTATAAACAACGATTCGTTAAACGGGCGGCATCGTTCGCATGCTCGTCATGCTCGTCATGCCTTTGCACTCTCTTCCTTCTTTATGCTCTCCCTTTACGCTTTCCCTTTGCCGCACGGTCGTCCCTACTCCCGTGTCCACTCTCGTGTCGTATCGTGTTCAAGATGCGATTCAACACAGCGCGGAAATCGAAATCCGGATGGACTTCCCTCTTTCTTCG]
[+] EMBL BI513869 [GGATAACGCGGAAGGCATGCCTGGTACGAGGAACGCGCCACCTCGTCGAAACGGCTCCCACGCGGACGCAGACACTTTTCCGCGAACAAAGGGAAGGAGAGTGTACACGCGTAGAGAGGTATTGTTATTCCTCTTCTCCCTATTCGCCTTCTTATCCTTTCGCCTTACGTCGTGAAAAATTGTGTTTTTTCTCAGCATCGATCGACGCGGTATCGCGACGCCTCGTTTGAAAAAAACGGTTGAAAAACGAGCCTCGTGGCTCGTCGCGAAAAACCTCGCGCGATGTTTCTACCAGGCAGAAGGATAATCCGAGCGGGAATTGCAACTCGACGATTCAA ATATATATATACACATATATTCGTCTCTGAGAGAAGACTAATTTAATCGATAGATCGTATTATTGTTGTTGTTGTTATTATTGTTATAAAATCGTCGTACGTAGGGCGCGATTTGTTTTTGTTTTGCGAATATTATTATTATTATAACACGGAACGGA ]
[+] EMBL BI513955 [GGATAACGCGGAAGGCATGCCTGGTACGAGGAACGCGCCACCTCGTCGAAACGGCTCCCACGCGGACGCAGACACTTTTCCGCGAACAAAGGGAAGGAGAGTGTACACGCGTAGAGAGGTATTGTTATTCCTCTTCTCCCTATTCGCCTTCTTATCCTTTCGCCTTACGTCGTGAAAAATTGTGTTTTTTCTCAGCATCGATCGACGCGGTATCGCGACGCCTCGTTTGAAAAAAACGGTTGAAAAACGAGCCTCGTGGCTCGTCGCGAAAAACCTCGCGCGATGTTTCTACCAGGCAGAAGGATAATCCGAGCGGGAATTGCAACTCGACGATTCAA ATATATATATACACATATATTCGTCTCTGAGAGAAGACTAATTTAATCGATAGATCGTATTATTGTTGTTGTTGTTATTATTGTTATAAAATCGTCGTACGTAGGGCGCGATTTGTTTTTGTTTTGCGAATATTAT ]
[-] EMBL BI505919 [ CTCGACGATTCAAATATATATATATACACATATATTCGTCTCTGAGAGAAGACTAATTTAATCGATAGATCGTATTATTGTTGTTGTTGTTATTATTGTTATAAAATCGTCGTACGTAGGGCGCGATTTGTTTTTGTTTTGCGAATATTATTATTATTATAACACGGAACGGAAAGAGATGGGAAAAAGGACGAACGCGAATTTCGAAATGTACGAAATCAGACGAGAGAAAGGGGGCGAGGAGGGGGTGACCGAAGAAGAAGCGTGACGCGTGCACGTCGATCGCGCGTTAAAAAGGTTTCTGTTCGTACAAGCGTGAACATTAGTTCGCGAAAACAAAGCATCGAAATCGTTGGAGAGAGGATGGACGATGCGTCGACGACTCGCGGTCCAGCCACGCGAAAAGAGAGATTTAATCACTTTAACAACTCGAAGGAATCGAAGGAAGCTCACGTTTCACGATTAACGCTGTAGTCACGATTATTGTCCTGTAACACGCATCCCCGATTTTCCGTCCTCTCCTTTTTCACTGCGTCACGTTCTTCCTCTCTCGTCGCTTTTCTCCTCTTTCGTCTTCCGTGTGACATAAGCTTGGATCGGTGTAGAGAGAGCAGTTTTTCCAACCGTGTAACAAAATATTATAAAC ]
[-] EMBL BI508358 [ TTTGTTTTGCGAATATTATTATTATTATAACACGGAACGGAAANNNATGGGAAAAAGGACGAACGCGAATTTCGAAATGTACGAAATCAGACGAGAGAAAGGGGGCGAGGAGGGGGTGACCGAAGAAGAAGCGTGACGCGTGCACGTCGATCGCGCGTTAAAAAGGTTTCTGTTCGTACAAGCGTGAACATTAGTTCGC ]
[-] EMBL BI506961 [ AAGCGTGACGCGTGCACGTCGATCGCGCGTTAAAAAGGTTTCTGTTCGTACAAGCGTGAACATTAGTTCGCGAAAACAAAGCATCGAAATCGTTGGAGAGAGGATGGACGATGCGTCGACGACTCGCGGTCCAGCCACGCGAAAAGAGAGATTTAATCACTTTAACAACTCGAAGGAATCGAAGGAAGCTCACGTTTCACGATTAACGCTGTAGTCACGATTATTGTCCTGTAACACGCATCCCCGATTTTCCGTCCTCTCCTTTTTCACTGCGTCACGTTCTTCCTCTCTCGTCGCTTTTCTCCTCTTTCGTCTTCCGTGTGACATAAGCTTGGATCGGTGTAGAGAGAGCAGTTTTTCCAACCGTGTAACAAAATATTATAAACAACGATTCGTTAAACGGGCGGCATCGTTCGCATGCTCGTCATGCTCGTCATGCCTTTGCACTCTCTTCCTTCTTTATGCTCTCCCTTTACGCTTTCCCTTTGCCGCACGGTCGTCCCTACTCCCGTGTCCACTCTCGTGTCGTATCGTGTTCAAGATGCGATTCAACACAGCGCGGAAATCGAAATCCGGATGGACTTCCCTCTTTCTTCG]
consensusID : consensus_56#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 852 fasta sequence
[TCAATCATTTATATATCTCTCTTCTTGTTTAAATAATTAGATCTGTCGGATGCGTAATCACGTATCACCGAGTAGTAGGAAAAATCGCTCAGGATAACGCGGAAGGCATGCCTGGTACGAGGAACGCGCCACCTCGTCGAAACGGCTCCCACGCGGACGCAGACACCTTTCCGCGAACAAAGGGAAGGAGAGTGTGCACGCGTAGAGAGGTATTGTTATTCCTCTTCTCCCTATTCGCCTTCTTATCCTTTCGCCTTACGTCGTGAAAAATTGTGTTTTTTCTCAGCATCGATCGACGCGGTATCGCGACGCCTCGTTTGAAAAAAAAGAAAAAAAACAAAGAAAAAATAAAAAAAAAAACAGGATTACGCGCGAACACCCTCTTTACACCAGCAATTGTTACAAATTANNTTTCCCTCGCAGAGAGAGATGGAATCGCGTAAATAAATAAATAAATAAA-AAATTAGTCACCTTCCCTTTGCGTATTTATAGGGAGAGTGTTGCCCGCTTCTACGTTCGAATTGAAAAAACAGGTTGTTTCGTTTTTCGATATCTAGTTTTACATTCTCAACGACGAAAAGTGGTTAAATTAAACGAAACAAGTGTCAAGAATGTTCTGACGGAGGCTCGTCCGATTTTTACAAAAAAAAAGGAAAAAAAAAAAGAGGAAAAGAAAAACGCTCGAGACGTACGCGTATTATTCTCAATGGACACACGTACGATCGATCGTTCGTCTTTGAAAATTTCGATCGATTTCTTGACGGTGCCTACGTTCCTAATTGCTTCCAAACCTCAGGGGTGAGAAAGAGAGAGAGAGGGAGAGAGAAAGAGCGAAAGAGAGAAAGAGAGGGA]
[-] EMBL BI509882 [TCAATCATTTATATATCTCTCTTCTTGTTTAAATAATTAGATCTGTCGGATGCGTAATCACGTATCACCGAGTAGTAGGAAAAATCGCTCAGGATAACGCGGAAGGCATGCCTGGTACGAGGAACGCGCCACCTCGTCGAAACGGCTCCCACGCGGACGCAGACACCTTTCCGCGAACAAAGGGAAGGAGAGTGTGCACGCGTAGAGAGGTATTGTTATTCCTCTTCTCCCTATTCGCCTTCTTATCCTTTCGCCTTACGTCGTGAAAAATTGTGTTTTTTCTCAGCATCGATCGACGCGGTATCGCGACGCCTCGTTTGAAAAAAAAGAAAAAAAACAAAGAAAAAATAAAAAAAAAAACAGGATTACGCGCGAACACCCTCTTTACACCAGCAATTGTTACAAATTAGATTTTCCTCGCAGAGAGAGATGGAATCGCGTAAATAAATAAATAAATAAATAAATTAGTCACCTTCCCTTTGCGTATTTATAAGGAGAGTGTTGCCCGCTTCTACGTTCGAATTGAAAAAACAGGTTGTTTCGTTTTTCGATATCTAGTTTTACATTCTCAACGACGAAAAGTGGTTAAATTAAAC ]
[+] EMBL BI508104 [ CACCAGCAATTGTTACAAATTANNTTTCCCTCGCAGAGAGAGATGGAATCGCGTAAATAAATAAATAAAT AAATTAGTCACCTTCCCTTTGCGTATTTATAGGGAGAGTGTTGCCCGCTTCTACGTTCGAATTGAAAAAACAGGTTGTTTCGTTTTTCGATATCTAGTTTTACATTCTCAACGACGAAAAGTGGTTAAATTAAACGAAACAAGTGTCAAGAATGTTCTGACGGAGGCTCGTCCGATTTTTACAAAAAAAAAGGAAAAAAAAAAAGAGGAAAAGAAAAACGCTCGAGACGTACGCGTATTATTCTCAATGGACACACGTACGATCGATCGTTCGTCTTTGAAAATTTCGATCGATTTCTTGACGGTGCCTACGTTCCTAATTGCTTCCAAACCTCAGGGGTGAGAAAGAGAGAGAGAGGGAGAGAGAAAGAGCGAAAGAGAGAAAGAGAGGGA]
consensusID : consensus_56#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 537 fasta sequence
[CGGCATCGTTCGCATGCTCGTCATGCTCGTCATGCCTTTGCACTCTCTTCCTTCTTTATGCTCTCCCTGTACGCTTTCCCCTTGCCGCACGGTCGTCCTACTCCCGTGTCCACTCTCGTGTCGTATCGTGTTCAAGATGCGATTCAACACAGCGCGGAAGGTCGGAAAAAATCGAAATCCGGATGGACTTCCCTCTTTCTTCGCCTCGACGAATCGAAAATCAATTCAAGAATTATTCGGAGAATTATTTGGAGGTCCCCTTCGGTTGATCGAACCGGCGATGCTCGCTCGAACGTATCGGATAGCAAAGAGCGCGTGGACGGTGGAAAGAAGGAATAATTTTCGGAGCCATGTAGCTCGGTTTCGCAACAGCCTCTCTCTGCCTCGCTCGGATATTTTTTTCCGGGCGGCGATCACAGTCACTCGTCTCTCCTTTTTTTTCCCGGCCCCGAAGTGGTTATTTTCTCTCCTTCTTCTCTCTTCTCCTCGGTATCCGGTTTCCTCTCTCGGGATCTTGGAAAGCGAGCGAAAGATACC]
[-] EMBL BI516213 [CGGCATCGTTCGCATGCTCGTCATGCTCGTCATGCCTTTGCACTCTCTTCCTTCTTTATGCTCTCCCTGTACGCTTTCCCCTTGCCGCACGGTCGTCCTACTCCCGTGTCCACTCTCGTGTCGTATCGTGTTCAAGATGCGATTCAACACAGCGCGGAAGGTCGGAAAAAATCGAAATCCGGATGGACTTCCCTCTTTCTTCGCCTCGACGAATCGAAAATCAATTCAAGAATTATTCGGAGAATTATTTGGAGGTCCCCTTCGGTTGATCGAACCGGCGATGCTCGCTCGAACGTATCGGATAGCAAAGAGCGCGTGGACGGTGGAAAGAAGGAATAATTTTCGGAGCCATGTAGCTCGGTTTCGCAACAGCCTCTCTCTGCCTCGCTCGGATATTTTTTTCCGGGCGGCGATCACAGTCACTCGTCTCTCCTT ]
[-] EMBL BI512605 [ ACTTCCCTCTTTCTTCGCCTCGACGAATCGAAAATCAATTCAAGAATTATTCGGAGAATTATTTGGAGGTCCCCTTCGGTTGATCGAACCGGCGATGCTCGCTCGAACGTATCGGATAGCAAAGAGCGCGTGGACGGTGGAAAGAAGGAATAATTTTCGGAGCCATGTAGCTCGGTTTCGCAACAGCCTCTCTCTGCCTCGCTCGGATATTTTTTTCCGGGCGGCGATCACAGTCACTCGTCTCTCCTTTTTTTTCCCGGCCCCGAAGTGGTTATTTTCTCTCCTTCTTCTCTCTTCTCCTCGGTATCCGGTTTCCTCTCTCGGGATCTTGGAAAGCGAGCGAAAGATACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_56#0 ------------------------------------------------------------
consensus_56#2 ------------------------------------------------------------
consensus_56#1 TCAATCATTTATATATCTCTCTTCTTGTTTAAATAATTAGATCTGTCGGATGCGTAATCA 60
consensus_56#0 -------------------------------GGATAACGCGGAAGGCATGCCTGGTACGA 29
consensus_56#2 ------------------------------------------------------------
consensus_56#1 CGTATCACCGAGTAGTAGGAAAAATCGCTCAGGATAACGCGGAAGGCATGCCTGGTACGA 120
consensus_56#0 GGAACGCGCCACCTCGTCGAAACGGCTCCCACGCGGACGCAGACACTTTTCCGCGAACAA 89
consensus_56#2 ------------------------------------------------------------
consensus_56#1 GGAACGCGCCACCTCGTCGAAACGGCTCCCACGCGGACGCAGACACCTTTCCGCGAACAA 180
consensus_56#0 AGGGAAGGAGAGTGTACACGCGTAGAGAGGTATTGTTATTCCTCTTCTCCCTATTCGCCT 149
consensus_56#2 ------------------------------------------------------------
consensus_56#1 AGGGAAGGAGAGTGTGCACGCGTAGAGAGGTATTGTTATTCCTCTTCTCCCTATTCGCCT 240
consensus_56#0 TCTTATCCTTTCGCCTTACGTCGTGAAAAATTGTGTTTTTTCTCAGCATCGATCGACGCG 209
consensus_56#2 ------------------------------------------------------------
consensus_56#1 TCTTATCCTTTCGCCTTACGTCGTGAAAAATTGTGTTTTTTCTCAGCATCGATCGACGCG 300
consensus_56#0 GTATCGCGACGCCTCGTTTGAAAAAAACGGTTGAAAAACGAGCCTCG-TGGCTCGTCGCG 268
consensus_56#2 ------------------------------------------------------------
consensus_56#1 GTATCGCGACGCCTCGTTTGAAAAAAAAGAAAAAAAACAAAGAAAAAATAAAAAAAAAAA 360
consensus_56#0 AAAAACCTCGCGCGATGTTTCTACCAGGCAGAAGGATAATCCGAGCGGGAATTGCAACTC 328
consensus_56#2 ------------------------------------------------------------
consensus_56#1 CAGGATTACGCGCGAACACCCTCTTTACACCAGCAATTGTTACAAATTANNTTTCC-CTC 419
consensus_56#0 GACGATTCAAATATATATATACACAT-ATATTCGTCTCTGAGAGAAGACTAATTTAATCG 387
consensus_56#2 -----CGGCATCGTTCGCATGCTCGTCATGCTCGTCA-TGCCTTTGCACTCTCTTCCTT- 53
consensus_56#1 GCAGAGAGAGATGGAATCGCGTAAAT-AAATAAATAAATAAAAAATTAGTCACCTTCCCT 478
* * * * * * *
consensus_56#0 ATAGATCGTATTATTGTTGTTGTTGTTATTATTGTTATAAAATCGTCGTACGTAGG--GC 445
consensus_56#2 ---CTTTATGCTCTCCCTGTACGCTTTCCCCTTGCCGCACGGTCGTCCTACTCCCGT-GT 109
consensus_56#1 ---TTGCGTATTTATAGGGAGAGTGTTGCCCGC-TTCTACGTTCGAATTGAAAAAACAGG 534
* * * ** * *** * *
consensus_56#0 GCGATTTGTTTTTGTTTTGCGAATATTATTATTATTATAACACGGAACGG--AAANNNAT 503
consensus_56#2 CCACTCTCGTGTCGTATCGTGTTCAAGAT-GCGATT-CAACACAGCGCGG--AAGGTCGG 165
consensus_56#1 TTGTTTCGTTTTTCGATATCTAGTTTTACATTCTCAACGACGAAAAGTGGTTAAATTAAA 594
* * * * * ** ** **
consensus_56#0 GGGAAAAAGGA-CGAACGCGAATTTCGAAATGTACG---AAATCAGACGAGAGAAAGGGG 559
consensus_56#2 AAAAAATCGAAATCCGGATGGACTTCCCTCTTTCTT---CGCCTCGACGAATCGAAAA-- 220
consensus_56#1 CGAAACAAGTGTCAAGAATGTTCTGACGGAGGCTCGTCCGATTTTTACAAAAAAAAAGGA 654
** * * * ** * **
consensus_56#0 GCGAGGAGGGGGTGACCGAAGAAGAAGCGTGACGCGTGCACGTCGATCGCGCGTTAAAAA 619
consensus_56#2 TCAATTCAAGAATTATTCGGAGAATTATTTGGAG-GTCCCCTTCGGTTGATCG----AAC 275
consensus_56#1 AAAAAAAAAAGAGGAA-AAGAAAAACGCTCGAGACGTACGCGTATTATTCTCAATGGACA 713
* * * * ** * * * * *
consensus_56#0 GGTTTCTGTTCGTACAAGCGTGAACATTAGTTCGCGAAAACAAAGCATCGAAATCGTTGG 679
consensus_56#2 CGGCGATGCTCGCTCGAACGT----ATCGGATAGCAAAG--AGCGCGTGGA---CGGTGG 326
consensus_56#1 CACGTACGATCGATCGTTCGT---CTTTGAAAATTTCGATCGATTTCTTGA---CGGTGC 767
* *** * *** * * ** ** **
consensus_56#0 AGAGAGGATGGACGATGCGTCGACGACTCGCGGTCCAGCCACGCGAAAAGAGAGATTTAA 739
consensus_56#2 AAAGAAG--GAATAATTT-TCGGAGCCATGTAGCTCGGTTTCGCAA-----------CAG 372
consensus_56#1 CTACGTTCCTAAT--TGCTTCCAAACCTCAGGGGTGAGAAAGAGAGAGAGAGGGAGAGAG 825
* * * ** * * * *
consensus_56#0 TCACTTTAACAACTCGAAGGAATCGAAGGAAGCTCACGTTTCACGATTAACGCTGTAGTC 799
consensus_56#2 CCTCTCTC-TGCCTCG----------------CTCGGATATTTTTTTCCGGGCGGCGATC 415
consensus_56#1 AAAGAGCGAAAGAGAGAAAGAGAGGGA--------------------------------- 852
*
consensus_56#0 ACGATTATTGTCCTGTAACACGCATCCCCGATTTTCCGTCCTCTCCTTTTTCACTGCGTC 859
consensus_56#2 ACAGTCACTCGTCTCTCCTTTTTTTTCCCGGC--CCCGAAGTGGTTATTTTCTCTCCTTC 473
consensus_56#1 ------------------------------------------------------------
consensus_56#0 ACGTTCTTCCTCTCTCGTCGCTTTTCTCCTCTTTCGTCTTCCGTGTGACATAAGCTTGGA 919
consensus_56#2 TTCTCTCTTCTCCTCGGTATCCGGTTTCCTCTCTCGGGATCT-TGGAAAGCGAGCGAAAG 532
consensus_56#1 ------------------------------------------------------------
consensus_56#0 TCGGTGTAGAGAGAGCAGTTTTTCCAACCGTGTAACAAAATATTATAAACAACGATTCGT 979
consensus_56#2 ATACC------------------------------------------------------- 537
consensus_56#1 ------------------------------------------------------------
consensus_56#0 TAAACGGGCGGCATCGTTCGCATGCTCGTCATGCTCGTCATGCCTTTGCACTCTCTTCCT 1039
consensus_56#2 ------------------------------------------------------------
consensus_56#1 ------------------------------------------------------------
consensus_56#0 TCTTTATGCTCTCCCTTTACGCTTTCCCTTTGCCGCACGGTCGTCCCTACTCCCGTGTCC 1099
consensus_56#2 ------------------------------------------------------------
consensus_56#1 ------------------------------------------------------------
consensus_56#0 ACTCTCGTGTCGTATCGTGTTCAAGATGCGATTCAACACAGCGCGGAAATCGAAATCCGG 1159
consensus_56#2 ------------------------------------------------------------
consensus_56#1 ------------------------------------------------------------
consensus_56#0 ATGGACTTCCCTCTTTCTTCG 1180
consensus_56#2 ---------------------
consensus_56#1 ---------------------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |