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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_572#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 561 fasta sequence
[TAAACTAGTTATTTATGAACATTGAGAGAGCAGATAATAGTGCGTGGGATGGAATGTTTGCATGAATAACAGGTGGCAGGTGTCGTAGCAAATTGTATAAAATTATTATTATACTAATTTAAAGTACAGTGTGAAAAATACATTTTTTTTTTTGGATATACTATATATTATATATATATATATGTATATATATATATACACACATATATATATATATATGCATATATATATATACATATAAAAGAATATACATAAAATGAAATAGGAAATTTGAGTGCAGTTATGAAAAATTATTTTCATTTAATTCTAGAAAAGAATTCTCTACATTATTTTTTGTCTAATATTTTTCATATCAAACATATTTTCATTTATAAATTATAATTATTAATTAATACCAAGATATTCAGATTTGTTATTCGGTTATTNNCAAAGTTTGCCATTTATATTTTTTATGGACTTTCTGCTTTGTTGAAGAAATAAAAAAATACCATGTATATTGTATTTGACTCGCATGAAACACATGTACGTTTAAACGTGTTTGTATATTTTCCATGTATATAC]
[+] EMBL BI503018 [TAAACTAGTTATTTATGAACATTGAGAGAGCAGATAATAGTGCGTGGGATGGAATGTTTGCATGAATAACAGGTGGCAGGTGTCGTAGCAAATTGTATAAAATTATTATTATACTAATTTAAAGTACAGTGTGAAAAATACATTTTTTTTTTTGGATATACTATATATTATATATATATATATGTATATATATATATACACACATATATATATATATATGCATATATATATATACATATAAAAGAATATACATAAAATGAAATAGGAAATTTGAGTGCAGTTATGAAAAATTATTTTCATTTAATTCTAGAAAAGAATTCTCTACATTATTTTTTGTCTAATATTTTTCATATCAAACATATTTTCATTTATAAATTATAATTATTAATTAATACCAAGATATTCAGATTTGTTATTCGGTTATTAGCAAAGTTTGCCATTTATATTTTTTATGGACTTTCTGCTTTGTTGAAGAAATAAAAAAATACCATGTATATTGTATTTGACTCGCATGAAACACATGTACGTTTAAACGTGTTTGTATATTTTCCATGTATATAC]
[+] EMBL BI504726 [TAAACTAGTTATTTATGAACATTGAGAGAGCAGATAATAGTGCGTGGGATGGAATGTTTGCATGAATAACAGGTGGCAGGTGTCGTAGCAAATTGTATAAAATTATTATTATACTAATTTAAAGTACAGTGTGAAAAATACATTTTTTTTTTTGGATATACTATATATTATATATATATATATGTATATATATATATACACACATATATATATATATATGCATATATATATATACATATAAAAGAATATACATAAAATGAAATAGGAAATTTGAGTGCAGTTATGAAAAATTATTTTCATTTAATTCTAGAAAAGAATTCTCTACATTATTTTTTGTCTAATATTTTTCATATCAAACATATTTTCATTTATAAATTATAATTATTAATTAATACCAAGATATTCAGATTTGTTATTCGGTTATTNNCAAAGTTTGCCATTTATATTTTTTATGGACTTTCTGCTTTGTTGAAGAAATAAAAAAATACCATGTATATTGTATTTGACTCGCATGAAACA ]
consensusID : consensus_572#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 497 fasta sequence
[TTGTATAATTTTTCTTTTACGCTTTGTATTGGAAAATCGTAAAGGATATATTCAATTTCATCAAGCGATATTCGCAAAACAGCCGNNNTTTGCTGTAACTTAGATAACAAATTGCAGATCACAGGTGTGTATAAGTAGGTCAATTTTAAGTAAATTATATTTGAGACATACGCAAAAAGAAAACTATTGATAACCAAGTCTGATGCAAGGGCGACGGTTCTTCCTATTATTATAATAAATATAAACAGAATTACTAATTTATATCTTGCGAATTTAACAATGTATTCAACTGTATGAAGAAAAAAATACATTCGTAATTAAAGANNNATGAGAGTGAACAGTCAAAACATAACATTACGAAATAATTCGTAATGTAAAATATGTTGAAATTAGGAAAACGGNNGGATACAAATGGTGTGAATATTAAGGCGCTACTATTTTTTAAACTAGTTATTTATGAACATTGAGAGAGCAGATAATAGTGCGTGGGATGGAAT]
[+] EMBL BI516446 [TTTTTTTTTTTTTCTTTTACGCTTTGTATTGGAAAATCGTAAAGGATATATTCAATTTCATCAAGCGATATTCGCAAAACAGCCGNNNTTTGCTGTAACTTAAATAACAAATTGCAGATCACAGGTGTGTATAAGTAGGTCAATTTTAAGTAAATTATATTTGAGACATACGCAAAAAGAAAACTATTGATAACCAAGTCTGATGCAAGGGCGACGGTTCTTCCTATTATTATAATAAATATAAACAGAATTACTAATTTATATCTTGCGAATTTAACAATGTATTCAACTGTATGAAGAAAAAAATACATTCGTAATTAAAGANNNATGAGAGTGAACAGTCAAAACATAACATTACGAAATAATTCGTAATGTAAAATATGTTGAAATTAGGAAAA ]
[+] EMBL BI516508 [ GTATAATTTTTCTTTTACGCTTTGTATTGGAAAATCGTAAAGGATATATTCAATTTCATCAAGCGATATTCGCAAAACAGCCGGTGTTTGCTGTAACTTAGATAACAAATTGCAGATCACAGGTGTGTATAAGTAGGTCAATTTTAAGTAAATTATATTTGAGACATACGCAAAAAGAAAACTATTGATAACCAAGTCTGATGCAAGGGCGACGGTTCTTCCTATTATTATAATAAATATAAACAGAATTACTAATTTATATCTTGCGAATTTAACAATGTATTCAACTGTATGAAGAAAAAAATACATTCGTAATTAAAGAAGAATGAGAGTGAACAGTCAAAACATAACATTACGAAATAATTCGTAATGTAAAATATGTTGAAATTAGGAAAACGGNNGGATACAAATGGTGTGAATATTAAGGCGCTACTATTTTTTAAACTAGTTATTTATGAACATTGAGAGAGCAGATAATAGTGCGTGGGATGGAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_572#0 TAAACTAGTTATTTATGAACATTGAGAGAGCAGATAATAGTGCGTGGGATGGAATGTTTG 60
consensus_572#1 TTGTATAATTTTTCTTTTACGCTTTGT-ATTGGAAAATCGTAAAGGATATATTCAATTTC 59
* ** ** ** * ** * * * ** *** ** * ** ***
consensus_572#0 CATGAATAACAGGTGGCAGGTGTCGTAGCAAATTGTATAAAATTATTATTATACTAATTT 120
consensus_572#1 ATCAAGCGATATTCGCAAAACA--GCCGNNNTTTGCTGTAACTTAG-ATAACAA-ATTGC 115
* * * * * * * *** ** *** ** * * * *
consensus_572#0 AAAGTACAGTGTGAAAAATACATTTTTTTTTTTGGATATACTATATATTATATATATATA 180
consensus_572#1 AGATCACAG-GTGTGTATAAGTAGGTCAATTTTAAGTAAATTATATTTGAGACATACGCA 174
* * **** *** * * * **** ** * ***** * * * *** *
consensus_572#0 TATGTATATATATATATACACACATATATATATATATATGCATATATATATATACATATA 240
consensus_572#1 AAAAGAAAACTATTGATAACCAAGTCTG---ATGCAAGGGCG-ACGGTTCTTCCTAT-TA 229
* * * *** *** ** * * ** * ** * * * ** **
consensus_572#0 AAAGAATATACATAAAATGAAATAGGAAATTTGAGTGCAGTTATGAAAAATTATTTTCAT 300
consensus_572#1 TTATAATAAATATAAACAGAATTACTAATTTATATCTTGCGAATTTAACAATGTATTCAA 289
* **** * ***** *** ** ** ** * ** ** * * * ****
consensus_572#0 TTAATTCTAGAAAAGAATTCTCTACATTATTTTTTGTCTAATATTTTTCATATCAAACAT 360
consensus_572#1 CTGTATGAAGAAAAAAATACATT-CGTAATTAAAGANNNATGAGAGTGAACAGTCAAAAC 348
* * ****** *** * * * * *** * * * * * ** *
consensus_572#0 ATTTTCATTTATAAATTATAATTATTAATTAATACCAAGATATTCAGATTTGTTATTCGG 420
consensus_572#1 ATAAC--ATTACGAA--ATAATTCGTAATGTAAA---ATATGTTGAAATTAGGAAAACGG 401
** *** ** ****** **** * * * ** ** * *** * * ***
consensus_572#0 TTATTNNCAAAGTTTGCCATTTATATTTTTTATGGACTTTCTGCTTTGTTGAAGAAATAA 480
consensus_572#1 NNGGATACAAA---TGGTGTGAATAT----TAAGGCGCTACTATTTT-TTAAACTAGTTA 453
**** ** * **** ** ** * ** *** ** ** * * *
consensus_572#0 AAAAATACCATGTATATTGTATTTGACT-CGCATGAAACACATGTACGTTTAAACGTGTT 539
consensus_572#1 TTTATGAACATTGAGAGAGCAGATAATAGTGCGTGGGATGGAAT---------------- 497
* * *** * * * * * * ** ** * *
consensus_572#0 TGTATATTTTCCATGTATATAC 561
consensus_572#1 ----------------------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |