Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 581 cluster # 581       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_581#0 length = 638 sequences # 2  
 consensus_581#1 length = 560 sequences # 2  
consensusID : consensus_581#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 638
fasta sequence 
                              [AATAAGGGTGTCGGATAGAGATAGAGAGAAGATTTCAAAACCCGATTTATATAGAAAAACATGCGAAAAAAAAAAAACCAACCAAGAGGGATTTAAATGCGCGTAGATGATTTCAAGGGAAAAGCCACAAGTTATTGAATAGCGTAGTCCACCATTTGTCCGTGTAGTTTATCTGCTCGCCTATCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTTTGTCTGTCTGTCTGTCTGTCTATCTGTCTGTCCGCCTATTTGACTGACTGGCTGACTTAATCTGTCTGTCTTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTTTCCGTCTGTTCACCAAATCTGTTTGAAAAATTTGGCAGCCAGCCAGACAGTCGGTCGGTCGGTCGATCAGTCGNTCAAACAGTTAGCCAGTCAGTCGGTCAATCAGTTAGTCAGTCTGCCTGTCTGTCATTCTGTC-ATATATATATATATATATATATATATATAGAGACTATCTATATCTCCGTCTAAAATCTNNNNCTCTTTTTTTTTTCTTTCTTTTTATATTATTATTATTATTATATTAACGAATATTGAAAGTAAGATATAAAGATGTAAAGAAATAGTTGA]

[+] EMBL BI515524             [AATAAGGGTGTCGGATAGAGATAGAGAGAAGATTTCAAAACCCGATTTATATAGAAAAACATGCGAAAAAAAAAAAACCAACCAAGAGGGATTTAAATGCGCGTAGATGATTTCAAGGGAAAAGCCACAAGTTATTGAATAGCGTAGTCCACCATTTGTCCGTGTAGTTTATCTGCTCGCCTATCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTTTGTCTGTCTGTCTGTCTGTCTATCTGTCTGTCCGCCTATTTGACTGACTGGCTGACTTAATCTGTCTGTCTTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTTTCCGTCTGTTCACCAAATCTGTTTGAAAAATTTGGCAGCCAGCCAGACAGTCGGTCGGTCGGTCGATCAGTCGATCAAACAGTTAGCCAGTCAGTCGGTCAATCAGTTAGTCAGTCTGCCTGTCTGTCATTCTGTCTATATATATATATATATATATATATATATAGAGACTATCTATATCTCCGTCTAAAATCTNNNNCTCTTTTTTTTTTCTTTCTTTTTATATTATTATTATTATTATATTAACGAATATTGAAAGTAAGATATAAAGATGTAAAGAAATAGTTGA]
[+] EMBL BI512079             [                                                                                                                                                                          ATCTGCTCGCCTATCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTTTGTCTGTCTGTCTGTCTGTCTATCTGTCTGTCCGCCTATTTGACTGACTGGCTGACTTAATCTGTCTGTCTTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTTTCCGTCTGTTCACCAAATCTGTTTGAAAAATTTGGCAGCCAGCCAGACAGTCGGTCGGTCGGTCGATCAGTCGNTCAAACAGTTAGCCAGTCAGTCGGTCAATCAGTTAGTCAGTCTGCCTGTCTGTCATTCTGTC  TATATATATATATATATATATATATATAGAGACTATCTATATCTCCGTCTAAAATCTGTTTCTCTTTTTTTTTTCTTTCTTTTTATATTATTATTATTATTATATTAACGAATATTGAAAGTAAGATATAAAGATGTAAAGAA        ]




>consensus_581#0
AATAAGGGTGTCGGATAGAGATAGAGAGAAGATTTCAAAACCCGATTTATATAGAAAAAC
ATGCGAAAAAAAAAAAACCAACCAAGAGGGATTTAAATGCGCGTAGATGATTTCAAGGGA
AAAGCCACAAGTTATTGAATAGCGTAGTCCACCATTTGTCCGTGTAGTTTATCTGCTCGC
CTATCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTTTGTCTGTCTGTCTGT
CTGTCTATCTGTCTGTCCGCCTATTTGACTGACTGGCTGACTTAATCTGTCTGTCTTGTC
TGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTTTCCGTCTGTT
CACCAAATCTGTTTGAAAAATTTGGCAGCCAGCCAGACAGTCGGTCGGTCGGTCGATCAG
TCGNTCAAACAGTTAGCCAGTCAGTCGGTCAATCAGTTAGTCAGTCTGCCTGTCTGTCAT
TCTGTCATATATATATATATATATATATATATATAGAGACTATCTATATCTCCGTCTAAA
ATCTNNNNCTCTTTTTTTTTTCTTTCTTTTTATATTATTATTATTATTATATTAACGAAT
ATTGAAAGTAAGATATAAAGATGTAAAGAAATAGTTGA

consensusID : consensus_581#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 560
fasta sequence 
                              [AAAAAACCAACCAAGAGGGATTTAAATGCGCGTAGATGATTTCAAGGGAAAAGCCACAAGTTATTGAATAGCGTAGTCCACCATTTGTCCGTGTAGTTTATCTGCTCGCCTATCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTTTGTCTGTCTGTCTGTCTGTCTGTCTATCTGTCTGTCCGCCTATTTGACTGACTGGCTGACTTAATCTGTCTGTCTTGTCTGTCTGTCTGTCTGTCTGTCTGTCTTTCCGTCTGTTCACCAAATCTGTTTGAAAAATTTGGCAGCCAGCCAGACAGTCGGTCGGTCGGTCGATCAGTCGATCAAACAGTTAGCCAGTCAGTCGGTCAATCAGTTAGTCAGTCTGCCTGTCTGTCATTCTGTCTATATATATATATATATATATATATATATATATATAGAGACTATCTATATCTCCGTCTAAAATCTGTTTCTCTTTTTTTTTCTTTCTTTTTATATTATTATTATTATTATATTAACGAATATTGAAAGTAAGATATAAAGATGTAAAGAAATAGTTGAAAAAAAA]

[+] EMBL BI514423             [AAAAAACCAACCAAGAGGGATTTAAATGCGCGTAGATGATTTCAAGGGAAAAGCCACAAGTTATTGAATAGCGTAGTCCACCATTTGTCCGTGTAGTTTATCTGCTCGCCTATCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTTTGTCTGTCTGTCTGTCTGTCTGTCTATCTGTCTGTCCGCCTATTTGACTGACTGGCTGACTTAATCTGTCTGTCTTGTCTGTCTGTCTGTCTGTCTGTCTGTCTTTCCGTCTGTTCACCAAATCTGTTTGAAAAATTTGGCAGCCAGCCAGACAGTCGGTCGGTCGGTCGATCAGTCGATCAAACAGTTAGCCAGTCAGTCGGTCAATCAGTTAGTCAGTCTGCCTGTCTGTCATTCTGTCTATATATATATATATATATATATATATATATATATAG                                                                                                                                ]
[+] EMBL BI502937             [                                                                                                                                                                            TCTGTCTATCTGTCTGTCCGCCTATTTGACTGACTGGCTGACTTAATCTGTCTGTCTTGTCTGTCTGTCTGTCTGTCTGTCTGTCTTTCCGTCTGTTCACCAAATCTGTTTGAAAAATTTGGCAGCCAGCCAGACAGTCGGTCGGTCGGTCGATCAGTCGATCAAACAGTTAGCCAGTCAGTCGGTCAATCAGTTAGTCAGTCTGCCTGTCTGTCATTCTGTCTATATATATATATATATATATATATATATATATATAGAGACTATCTATATCTCCGTCTAAAATCTGTTTCTCTTTTTTTTTCTTTCTTTTTATATTATTATTATTATTATATTAACGAATATTGAAAGTAAGATATAAAGATGTAAAGAAATAGTTGAAAAAAAA]




>consensus_581#1
AAAAAACCAACCAAGAGGGATTTAAATGCGCGTAGATGATTTCAAGGGAAAAGCCACAAG
TTATTGAATAGCGTAGTCCACCATTTGTCCGTGTAGTTTATCTGCTCGCCTATCTATCTG
TCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTTTGTCTGTCTGTCTGTCTGTCTGTCTA
TCTGTCTGTCCGCCTATTTGACTGACTGGCTGACTTAATCTGTCTGTCTTGTCTGTCTGT
CTGTCTGTCTGTCTGTCTTTCCGTCTGTTCACCAAATCTGTTTGAAAAATTTGGCAGCCA
GCCAGACAGTCGGTCGGTCGGTCGATCAGTCGATCAAACAGTTAGCCAGTCAGTCGGTCA
ATCAGTTAGTCAGTCTGCCTGTCTGTCATTCTGTCTATATATATATATATATATATATAT
ATATATATATAGAGACTATCTATATCTCCGTCTAAAATCTGTTTCTCTTTTTTTTTCTTT
CTTTTTATATTATTATTATTATTATATTAACGAATATTGAAAGTAAGATATAAAGATGTA
AAGAAATAGTTGAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_581#0      AATAAGGGTGTCGGATAGAGATAGAGAGAAGATTTCAAAACCCGATTTATATAGAAAAAC 60
consensus_581#1      ------------------------------------------------------------
                                                                                 

consensus_581#0      ATGCGAAAAAAAAAAAACCAACCAAGAGGGATTTAAATGCGCGTAGATGATTTCAAGGGA 120
consensus_581#1      -----------AAAAAACCAACCAAGAGGGATTTAAATGCGCGTAGATGATTTCAAGGGA 49
                                *************************************************

consensus_581#0      AAAGCCACAAGTTATTGAATAGCGTAGTCCACCATTTGTCCGTGTAGTTTATCTGCTCGC 180
consensus_581#1      AAAGCCACAAGTTATTGAATAGCGTAGTCCACCATTTGTCCGTGTAGTTTATCTGCTCGC 109
                     ************************************************************

consensus_581#0      CTATCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTTTGTCTGTCTGTCTGT 240
consensus_581#1      CTATCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTTTGTCTGTCTGTCTGT 169
                     ************************************************************

consensus_581#0      CTGTCT----ATCTGTCTGTCCGCCTATTTGACTGACTGGCTGACTTAATCTGTCTGTCT 296
consensus_581#1      CTGTCTGTCTATCTGTCTGTCCGCCTATTTGACTGACTGGCTGACTTAATCTGTCTGTCT 229
                     ******    **************************************************

consensus_581#0      TGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTTTCCGTC 356
consensus_581#1      TGTCTGTCTGTCTGTCTGTCTGTCTGTCT------------------------TTCCGTC 265
                     *****************************                        *******

consensus_581#0      TGTTCACCAAATCTGTTTGAAAAATTTGGCAGCCAGCCAGACAGTCGGTCGGTCGGTCGA 416
consensus_581#1      TGTTCACCAAATCTGTTTGAAAAATTTGGCAGCCAGCCAGACAGTCGGTCGGTCGGTCGA 325
                     ************************************************************

consensus_581#0      TCAGTCGNTCAAACAGTTAGCCAGTCAGTCGGTCAATCAGTTAGTCAGTCTGCCTGTCTG 476
consensus_581#1      TCAGTCGATCAAACAGTTAGCCAGTCAGTCGGTCAATCAGTTAGTCAGTCTGCCTGTCTG 385
                     ******* ****************************************************

consensus_581#0      TCATTCTGTC-------ATATATATATATATATATATATATATATAGAGACTATCTATAT 529
consensus_581#1      TCATTCTGTCTATATATATATATATATATATATATATATATATATAGAGACTATCTATAT 445
                     **********       *******************************************

consensus_581#0      CTCCGTCTAAAATCTNNNNCTCTTTTTTTTTTCTTTCTTTTTATATTATTATTATTATTA 589
consensus_581#1      CTCCGTCTAAAATCTGTTTCTCTTTTTTTTT-CTTTCTTTTTATATTATTATTATTATTA 504
                     ***************    ************ ****************************

consensus_581#0      TATTAACGAATATTGAAAGTAAGATATAAAGATGTAAAGAAATAGTTGA------- 638
consensus_581#1      TATTAACGAATATTGAAAGTAAGATATAAAGATGTAAAGAAATAGTTGAAAAAAAA 560
                     *************************************************


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)