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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_591#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 798 fasta sequence
[TTTTTTTTTTTTGTTTCTTTGGTCCCGTTTCGCGTTTCGGAGTGGCCGCGAAACAACGCTTTCGAAATGAAACAATGACACGGACAAGANANNNCAGGTCCCAATGTTTCAGCGGAAATGAATGCTCGATTACTTCTGAGAGCAGAGAGACGAGCCTTCCTTTTCCTTCCTATATTAACAAACAATCTTTTGTTCTTTCGCGAATGTAAAATGAATGTGTGCGCGTTTCTTCTTCTTCTTCTTCTTCTTCTCGTTGGAACAACGGCCAAGATTAGCCAAGCGATCCTTTTCTTTCCTCCTTCTTTCTTCCGCCCCCAAAAAAATCTCAGATCTTCCCTTCTGTAATTTTTTCCCCCCCAATTCGATTGATCTTATCGCTATTCCAATCTTCTTCTCCTCTTCATCCCTTTTCACACTCGTTTCTCCTCGGTACGTGCGTGTATGTATGTCGTCGCACTTGTATGTTTCTCGAAGGCGTGAACATCTTCGGGATTGATCACATTGGATAGAACGGATCTCTGGACACGGAGTGCCTCGAACAACGTAACAGCATCGCCGATAATCGCGCGAAATCAACAATATATTACGAAACAATGCGTCGCGGTATATCCATAATATAATAATAATAATTACGTGTCTTATGTATTTTTTTTNNAGGTATATCCTTGTTTCTGCNNNTCTTCGTACGATACATAGCGATGGAATAATTTTTAAAAATGATGAAGAAATAGCGCTCTCTCGAAACAAATTCTGGAGTNAGAAACGTAAACTATATTAATCAAAGGGAACAATATTAAT]
[-] EMBL BI515041 [TTTTTTTTTTTTGTTTCTTTGGTCCCGTTTCGCGTTTCGGAGTGGCCGCGAAACAACGCTTTCGAAATGAAACAATGACACGGACAAGANANNNCAGGTCCCAATGTTTCAGCGGAAATGAATGCTCGATTACTTCTGAGAGCAGAGAGACGAGCCTTCCTTTTCCTTCCTATATTAACAAACAATCTTTTGTTCTTTCGCGAATGTAAAATGAATGTGTGCGCGTTTCTTCTTCTTCTTCTTCTTCTTCTCGTTGGAACAACGGCCAACATTAGCCAAGCGATCCTTTTCTTTCCTCCTTCTTTCTTCCGCCCC ]
[+] EMBL BI504990 [ tTTTTTTTTTTTTTTCTTCTCGTTGGAACAACGGCCAAGATTAGCCAAGCGATCCTTTTCTTTCCTCCTTCTTTCTTCCGCCCCCAAAAAAATCTCAGATCTTCCCTTCTGTAATTTTTTCCCCCCCAATTCGATTGATCTTATCGCTATTCCAATCTTCTTCTCCTCTTCATCCCTTTTCACACTCGTTTCTCCTCGGTACGTGCGTGTATGTATGTCGTCGCACTTGTATGTTTCTCGAAGGCGTGAACATCTTCGGGATTGATCACATTGGATAGAACGGATCTCTGGACACGGAGTGCCTCGAACAACGTAACAGCATCGCCGATAATCGCGCGAAATCAACAATATATTACGAAACAATGCGTCGCGGTATATCCATAATATAATAATAATAATTACGTGTCTTATGTATTTTTTTTNNAGGTATATCCTTGTTTCTGCNNNTCTTCGTACGATACATAGCGATGGAATAATTTTTAAAAATGATGAAGAAATAGCGCTCTCTCGAAACAAATTCTGGAGTNAGAAACGTAAACTATATTAATCAAAGGGAACAATATTAAT]
consensusID : consensus_591#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 458 fasta sequence
[GCGAAACAACGCTTTCGAAATGAAACAATGACACGGACAAGACACACCAGGTCCCAATGTTTCAGCGGAAATGAATGCTCGATTACTTCTGAGGGCAGAGAGACGAGCTTTCCTTTTCCTTCCTATATTAATAAACAATCTTTTGTGTCTTTCGCGAATTAAAAAGGAGAGAATGAAGCGCGTACGAGAGAGAGAAAGAGAGAGTGAGTGCGAAAGGATAGCGCGAAAGAATATGTTTGCTTATACATATATCTTATACAAATAGAATATATTATATAAATATATAAATAAATTTAATATTAACATAAACATTTTGTCAAATGTCGAAAATCATCTAAAAGCATATGAAAAAAGCTAACGATGATTTGATCTGTACCAAGTATGTAAGGTCATGTACTTGTTTATAAGGTAACTAAAAACTCAATTACAAAAACATTTCTGTTTTCGATCGTTTGCTA]
[+] EMBL BI502802 [GCGAAACAACGCTTTCGAAATGAAACAATGACACGGACAAGACACACCAGGTCCCAATGTTTCAGCGGAAATGAATGCTCGATTACTTCTGAGGGCAGAGAGACGAGCTTTCCTTTTCCTTCCTATATTAATAAACAATCTTTTGT TCTTTCGCGAATTAAAAAGGAGAGAATGAAGCGCGTACGAGAGAGAGAAAGAGAGAGTGAGTGCGAAAGGATAGCGCGAAAGAATATGTTTGCTTATACATATATCTTATACAAATAGAATATATTATATAAATATATAAATAAATTTAATATTAACATAAACATTTTGTCAAATGTCGAAAATCATCTAAAAGCATATGAAAAAAGCTAACGATGATTTGATCTGTACCAAGTATGTAAGTTCATGTACTTGTTTAT ]
[+] EMBL BI504772 [ AACAACGCTTTCGAAATGAAACAATGACACGGACAAGACACACCAGGTCCCAATGTTTCAGCGGAAATGAATGCTCGATTACTTCTGAGGGCAGAGAGACGAGCTTTCCTTTTCCTTCCTATATTAATAAACAATCTTTTGTGTCTTTCGCGAATTAAAAAGGAGAGAATGAAGCGCGTACGAGAGAGAGAAAGAGAGAGTGAGTGCGAAAGGATAGCGCGAAAGAATATGTTTGCTTATACATATATCTTATACAAATAGAATATATTATATAAATATATAAATAAATTTAATATTAACATAAACATTTTGTCAAATGTCGAAAATCATCTAAAAGCATATGAAAAAAGCTAACGATGATTTGATCTGTACCAAGTATGTAAGGTCATGTACTTGTTTATAAGGTAACTAAAAACTCAATTACAAAAACATTTCTGTTTTCGATCGTTTGCTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_591#0 TTTTTTTTTTTTGTTTCTTTGGTCCCGTTTCGCGTTTCGGAGTGGCCGCGAAACAACGCT 60
consensus_591#1 -----------------------------------------------GCGAAACAACGCT 13
*************
consensus_591#0 TTCGAAATGAAACAATGACACGGACAAGANANNNCAGGTCCCAATGTTTCAGCGGAAATG 120
consensus_591#1 TTCGAAATGAAACAATGACACGGACAAGACACACCAGGTCCCAATGTTTCAGCGGAAATG 73
***************************** * **************************
consensus_591#0 AATGCTCGATTACTTCTGAGAGCAGAGAGACGAGCCTTCCTTTTCCTTCCTATATTAACA 180
consensus_591#1 AATGCTCGATTACTTCTGAGGGCAGAGAGACGAGCTTTCCTTTTCCTTCCTATATTAATA 133
******************** ************** ********************** *
consensus_591#0 AACAATCTTTTGT-TCTTTCGCGAATGTAAAATGAATGTGTGCGCGTTTCTTCTTCTTCT 239
consensus_591#1 AACAATCTTTTGTGTCTTTCGCGAATTAAAAAGGAGAGAATGAAG--------CGCGTAC 185
************* ************ **** ** * ** * *
consensus_591#0 TCTTCTTCTTCTCGTTGGAACAACGGCCAAGATTAGC-CAAGCGATCCTTTTCTTTCCTC 298
consensus_591#1 GAGAGAGAGAAAGAGAGAGTGAGTGCGAAAGGATAGCGCGAAAGAATATGTTTGCTTATA 245
* * * *** **** * * ** * ** * *
consensus_591#0 CTTCTTTCTTCCGCCCCCAAAAAAATCTCAGATCTTCCCTTCTGTAATTTTTTCCCCCCC 358
consensus_591#1 CATATATCTTATACAAATAGAATA-TATTATATAAATATATAAATAAATTTAATATTAAC 304
* * * **** * * ** * * * * ** * *** *** *
consensus_591#0 A-ATTCGATTGATCTTATCGCTATTCCAATCTTCTTCTCCTCT-TCATCCCTTTTCACAC 416
consensus_591#1 ATAAACATTTTGTCAAATGTCGA---AAATCATCTAAAAGCATATGAAAAAAGCTAACGA 361
* * * ** ** ** * * **** *** * * * * **
consensus_591#0 TCGTTTCTCCTCGGTACGTGCGTGTATGTATGTCGTCGCACTTGTATGTTTCTCGAAGGC 476
consensus_591#1 TGATTTGATCT--GTAC---CAAGTATGTAAGGTCATGTACTTGTTTAT------AAGGT 410
* *** ** **** * ******* * * ****** * * ****
consensus_591#0 GTGAACATCTTCGGGATTGATCACATTGGATAGAACGGATCTCTGGACACGGAGTGCCTC 536
consensus_591#1 AACTAAAAACTCAATTACAAAAACATTTC-TGTTTTCGATCGTTTGCTA----------- 458
* * ** * ***** * **** * * *
consensus_591#0 GAACAACGTAACAGCATCGCCGATAATCGCGCGAAATCAACAATATATTACGAAACAATG 596
consensus_591#1 ------------------------------------------------------------
consensus_591#0 CGTCGCGGTATATCCATAATATAATAATAATAATTACGTGTCTTATGTATTTTTTTTNNA 656
consensus_591#1 ------------------------------------------------------------
consensus_591#0 GGTATATCCTTGTTTCTGCNNNTCTTCGTACGATACATAGCGATGGAATAATTTTTAAAA 716
consensus_591#1 ------------------------------------------------------------
consensus_591#0 ATGATGAAGAAATAGCGCTCTCTCGAAACAAATTCTGGAGTNAGAAACGTAAACTATATT 776
consensus_591#1 ------------------------------------------------------------
consensus_591#0 AATCAAAGGGAACAATATTAAT 798
consensus_591#1 ----------------------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |