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Apis mellifera
cluster # 614 cluster # 614       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_614#0 length = 988 sequences # 3  
 consensus_614#1 length = 372 sequences # 1  
consensusID : consensus_614#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 988
fasta sequence 
                              [GGACCTGCAGTATCTATACCAGTTACTACAATTAAACCTGCTCAAGCATTAGAAGCTGCAAAAGTACAATTACCTCCTGATGATTATACACGTGAAATAACTGGTACCAGAACAGAACAACGGGTAAAAATGAACAGAATGCGAATGCGTATTGCAGAACGATTAAAAGAAGCTCAAAATACGAATGCTATGTTAACAACATTTAATGAAATTGATATGAGTCGTATTATGGAATTCCGCAAATTACATCAAGAAAACTTTACAAAGAAATATGGTTTGAAATTAGGATTTATGAGTCCATTTATTGCAGCAAGTGCCTATGCTTTAAAAGATCAACCAGTAGTAAATGCTGTAATAGACGGC-GCTGAAATAGTTTATAGAGATTATGTTGATATCAGTGTTGCAGTTGCAACACCAAAAGGACTTGTTGTCCCAGTTCTTCGTAGTGTAGAAAATAAAAATTTTGCAGAAATTGAAATTGCTTTGGCAGCTTTAAGCGATAAAGCAAGAAAAGGTAAAATAACTGTCGAAGATATGGATGGTGGTACATTTACAATAAGTAACGGCGGTGTTTTTGGTTCTCTGATGGGAACGCCTATTATTAATCCACCACAAAGCTCAATTCTTGGAATGCACGGAGTATTTGATAGACCCATTGCAATAAAGGGCGAGATCGTAATTCGTCCAATGATGTATGTGGCTTTAACATATGATCATCGATTAATTGATGGACGTGAGGCTGTGATGTTTTTAAGAAAGATCAAGGCTGCTGTAGAAGATCCCAGAATTATATTAGCTGGACTTTGAGCATCGTAAATATTTTTATTAAATCGCTTCAAACACGCCTCTCATCATATCTAAAACATTTTGTACACGTTGTATTATATTGTGTTCATCAAAACAACATATTCTTAAATACTTATTAATCATTGTGATAAATGAAAGTAAAAAGAGAAAAATATTATACGCGAAATAACACGAAAAAAAA]

[+] EMBL BI511683             [GGACCTGCAGTATCTATACCAGTTACTACAATTAAACCTGCTCAAGCATTAGAAGCTGCAAAAGTACAATTACCTCCTGATGATTATACACGTGAAATAACTGGTACCAGAACAGAACAACGGGTAAAAATGAACAGAATGCGAATGCGTATTGCAGAACGATTAAAAGAAGCTCAAAATACGAATGCTATGTTAACAACATTTAATGAAATTGATATGAGTCGTATTATGGAATTCCGCAAATTACATCAAGAAAACTTTACAAAGAAATATGGTTTGAAATTAGGATTTATGAGTCCATTTATTGCAGCAAGTGCCTATGCTTTAAAAGATCAACCAGTAGTAAATGCTGTAATAGACGGC GCTGAAATAGTTTATAGAGATTATGTTGATATCAGTNNNGCAGTTGCAACACCAAAAGGACTTGTTGTCCCAGTTCTTCGTAGTGTAGAAAATAAAAATTTTGCAGAAATTGAAATTGCTTTGGCAGCTTTAAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BG101534             [                                                                                                                   AACAACGGGTAAAAATGAACAGAATGCGAATGCGTATTGCAGAACGATTAAAAGAAGCTCAAAATACGAATGCTATGTTAACAACATTTAATGAAATTGATATGAGTCGTATTATGGAATTCCGCAAATTACATCAAGAAAACTTTACAAAGAAATATGGTTTGAAATTAGGATTTATGAGTCCATTTATTGCAGCAAGTGCCTATGCTTTAAAAGATCAACCAGTAGTAAATGCTGTAATAGACGGCGGCTGAAATAGTTTATAGAGATTATGTTGATATCAGTGTTGCAGTTGCAACACCAAAAGGACTTGTTGTCCCAGTTCTTCGTAGTGTAGAAAATAAAAATTTTGCAGAAATTGAAATTGCTTTGGCAGCTTTAAGCGATAAAGCAAGAAAAGGTAAAATAACTGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BI503525             [                                                                                                                                                                                                                                                                                                                                                                                    AGTTTATAGAGATTATGTTGATATCAGTGTTGCAGTTGCAACACCAAAAGGACTTGTTGTCCCAGTTCTTCGTAGTGTAGAAAATAAAAATTTTGCAGAAATTGAAATTGCTTTGGCAGCTTTAAGCGATAAAGCAAGAAAAGGTAAAATAACTGTCGAAGATATGGATGGTGGTACATTTACAATAAGTAACGGCGGTGTTTTTGGTTCTCTGATGGGAACGCCTATTATTAATCCACCACAAAGCTCAATTCTTGGAATGCACGGAGTATTTGATAGACCCATTGCAATAAAGGGCGAGATCGTAATTCGTCCAATGATGTATGTGGCTTTAACATATGATCATCGATTAATTGATGGACGTGAGGCTGTGATGTTTTTAAGAAAGATCAAGGCTGCTGTAGAAGATCCCAGAATTATATTAGCTGGACTTTGAGCATCGTAAATATTTTTATTAAATCGCTTCAAACACGCCTCTCATCATATCTAAAACATTTTGTACACGTTGTATTATATTGTGTTCATCAAAACAACATATTCTTAAATACTTATTAATCATTGTGATAAATGAAAGTAAAAAGAGAAAAATATTATACGCGAAATAACACGAAAAAAAA]




>consensus_614#0
GGACCTGCAGTATCTATACCAGTTACTACAATTAAACCTGCTCAAGCATTAGAAGCTGCA
AAAGTACAATTACCTCCTGATGATTATACACGTGAAATAACTGGTACCAGAACAGAACAA
CGGGTAAAAATGAACAGAATGCGAATGCGTATTGCAGAACGATTAAAAGAAGCTCAAAAT
ACGAATGCTATGTTAACAACATTTAATGAAATTGATATGAGTCGTATTATGGAATTCCGC
AAATTACATCAAGAAAACTTTACAAAGAAATATGGTTTGAAATTAGGATTTATGAGTCCA
TTTATTGCAGCAAGTGCCTATGCTTTAAAAGATCAACCAGTAGTAAATGCTGTAATAGAC
GGCGCTGAAATAGTTTATAGAGATTATGTTGATATCAGTGTTGCAGTTGCAACACCAAAA
GGACTTGTTGTCCCAGTTCTTCGTAGTGTAGAAAATAAAAATTTTGCAGAAATTGAAATT
GCTTTGGCAGCTTTAAGCGATAAAGCAAGAAAAGGTAAAATAACTGTCGAAGATATGGAT
GGTGGTACATTTACAATAAGTAACGGCGGTGTTTTTGGTTCTCTGATGGGAACGCCTATT
ATTAATCCACCACAAAGCTCAATTCTTGGAATGCACGGAGTATTTGATAGACCCATTGCA
ATAAAGGGCGAGATCGTAATTCGTCCAATGATGTATGTGGCTTTAACATATGATCATCGA
TTAATTGATGGACGTGAGGCTGTGATGTTTTTAAGAAAGATCAAGGCTGCTGTAGAAGAT
CCCAGAATTATATTAGCTGGACTTTGAGCATCGTAAATATTTTTATTAAATCGCTTCAAA
CACGCCTCTCATCATATCTAAAACATTTTGTACACGTTGTATTATATTGTGTTCATCAAA
ACAACATATTCTTAAATACTTATTAATCATTGTGATAAATGAAAGTAAAAAGAGAAAAAT
ATTATACGCGAAATAACACGAAAAAAAA

consensusID : consensus_614#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 372
fasta sequence 
                              [GGTCGNAATGAACAGAATGCGAATGCGTNTTGCAGAACGATTAATGAGAAGCTCAAAATACGAATGCTATGTTAACAACATTTAATGAAATTGATATGAGTCGNATTATGGAATTCCGCAAGATTACATCAAGANAACTTTACAAAGAAATATGGNTATGAACTTAGGATTTATGAGTCCATANATTGCAGCNTGNGCCTATGCTTTAAAAGATCAACCCGCTTGCNATGCTGTAATGGGACTGGCGCTNACTTAGTTCATACCGATTATGTNGATATCNGTGTNNCAGNTNGCANCACCAAAAGGACTTGATGCCNCNCATCTTNGTAGTGTTAAAATGTNGAATCATCACATNTGGANATTGNNCTNGNA]

[+] EMBL BG101618             [GGTCGNAATGAACAGAATGCGAATGCGTNTTGCAGAACGATTAATGAGAAGCTCAAAATACGAATGCTATGTTAACAACATTTAATGAAATTGATATGAGTCGNATTATGGAATTCCGCAAGATTACATCAAGANAACTTTACAAAGAAATATGGNTATGAACTTAGGATTTATGAGTCCATANATTGCAGCNTGNGCCTATGCTTTAAAAGATCAACCCGCTTGCNATGCTGTAATGGGACTGGCGCTNACTTAGTTCATACCGATTATGTNGATATCNGTGTNNCAGNTNGCANCACCAAAAGGACTTGATGCCNCNCATCTTNGTAGTGTTAAAATGTNGAATCATCACATNTGGANATTGNNCTNGNA]




>consensus_614#1
GGTCGNAATGAACAGAATGCGAATGCGTNTTGCAGAACGATTAATGAGAAGCTCAAAATA
CGAATGCTATGTTAACAACATTTAATGAAATTGATATGAGTCGNATTATGGAATTCCGCA
AGATTACATCAAGANAACTTTACAAAGAAATATGGNTATGAACTTAGGATTTATGAGTCC
ATANATTGCAGCNTGNGCCTATGCTTTAAAAGATCAACCCGCTTGCNATGCTGTAATGGG
ACTGGCGCTNACTTAGTTCATACCGATTATGTNGATATCNGTGTNNCAGNTNGCANCACC
AAAAGGACTTGATGCCNCNCATCTTNGTAGTGTTAAAATGTNGAATCATCACATNTGGAN
ATTGNNCTNGNA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_614#0      GGACCTGCAGTATCTATACCAGTTACTACAATTAAACCTGCTCAAGCATTAGAAGCTGCA 60
consensus_614#1      ------------------------------------------------------------
                                                                                 

consensus_614#0      AAAGTACAATTACCTCCTGATGATTATACACGTGAAATAACTGGTACCAGAACAGAACAA 120
consensus_614#1      ------------------------------------------------------------
                                                                                 

consensus_614#0      CGGGTAAAAATGAACAGAATGCGAATGCGTATTGCAGAACGATTAA-AAGAAGCTCAAAA 179
consensus_614#1      --GGTCGNAATGAACAGAATGCGAATGCGTNTTGCAGAACGATTAATGAGAAGCTCAAAA 58
                       ***   ********************** ***************  ************

consensus_614#0      TACGAATGCTATGTTAACAACATTTAATGAAATTGATATGAGTCGTATTATGGAATTCCG 239
consensus_614#1      TACGAATGCTATGTTAACAACATTTAATGAAATTGATATGAGTCGNATTATGGAATTCCG 118
                     ********************************************* **************

consensus_614#0      CAA-ATTACATCAAGAAAACTTTACAAAGAAATATGGTT-TGAAATTAGGATTTATGAGT 297
consensus_614#1      CAAGATTACATCAAGANAACTTTACAAAGAAATATGGNTATGAACTTAGGATTTATGAGT 178
                     *** ************ ******************** * **** ***************

consensus_614#0      CCATTTATTGCAGCAAGTGCCTATGCTTTAAAAGATCAACCAGTAGTAAATGCTGTAATA 357
consensus_614#1      CCATANATTGCAGCNTGNGCCTATGCTTTAAAAGATCAACCCGCTTGCNATGCTGTAATG 238
                     ****  ********  * *********************** *      ********** 

consensus_614#0      GA--CGGCGCTGAAATAGTTTATAGAGATTATGTTGATATCAGTGTTGCAGTTG-CAACA 414
consensus_614#1      GGACTGGCGCTNACTTAGTTCATACCGATTATGTNGATATCNGTGTNNCAGNTNGCANCA 298
                     *    ****** *  ***** ***  ******** ****** ****  *** *  ** **

consensus_614#0      CCAAAAGGACTTGTTGTCCCAGTTCTTCGTAGTGTAGAAAATAAAAATTTTGCAGAAATT 474
consensus_614#1      CCAAAAGGACTTGATGCCNCNCATCTTNGTAGTGTT-AAAATGTNGAATCATCACATNTG 357
                     ************* ** * *   **** *******  *****    * *   ** *  * 

consensus_614#0      GAAATTGCTTTGGCAGCTTTAAGCGATAAAGCAAGAAAAGGTAAAATAACTGTCGAAGAT 534
consensus_614#1      GANATTGNNCTNGNA--------------------------------------------- 372
                     ** ****   * * *                                             

consensus_614#0      ATGGATGGTGGTACATTTACAATAAGTAACGGCGGTGTTTTTGGTTCTCTGATGGGAACG 594
consensus_614#1      ------------------------------------------------------------
                                                                                 

consensus_614#0      CCTATTATTAATCCACCACAAAGCTCAATTCTTGGAATGCACGGAGTATTTGATAGACCC 654
consensus_614#1      ------------------------------------------------------------
                                                                                 

consensus_614#0      ATTGCAATAAAGGGCGAGATCGTAATTCGTCCAATGATGTATGTGGCTTTAACATATGAT 714
consensus_614#1      ------------------------------------------------------------
                                                                                 

consensus_614#0      CATCGATTAATTGATGGACGTGAGGCTGTGATGTTTTTAAGAAAGATCAAGGCTGCTGTA 774
consensus_614#1      ------------------------------------------------------------
                                                                                 

consensus_614#0      GAAGATCCCAGAATTATATTAGCTGGACTTTGAGCATCGTAAATATTTTTATTAAATCGC 834
consensus_614#1      ------------------------------------------------------------
                                                                                 

consensus_614#0      TTCAAACACGCCTCTCATCATATCTAAAACATTTTGTACACGTTGTATTATATTGTGTTC 894
consensus_614#1      ------------------------------------------------------------
                                                                                 

consensus_614#0      ATCAAAACAACATATTCTTAAATACTTATTAATCATTGTGATAAATGAAAGTAAAAAGAG 954
consensus_614#1      ------------------------------------------------------------
                                                                                 

consensus_614#0      AAAAATATTATACGCGAAATAACACGAAAAAAAA 988
consensus_614#1      ----------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)