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Apis mellifera
cluster # 619 cluster # 619       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_619#0 length = 1132 sequences # 3  
 consensus_619#1 length = 351 sequences # 1  
consensusID : consensus_619#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1132
fasta sequence 
                              [CATTCTGATGTTGGAGCATTCCGTAGACGTCTTGTGATATCAGAAAAAAAAAAATAAATAAATAAATAAATAAATAAATATTCATATAGGCATCCCGTTTAAGTAAAGGAGCAAAAAAAAGATCACTGCGCTAGATTGGCACGCCCTTGTTAAGAGTTTAAAAAGAAAAAAAAATTAAAAAATGCAATGTAGTCACGGTATAAAAAAAAATAATAATAATAAATAAATAAATAAATAAATAAATAAGAGCGGTATTATAAATGTTACACTGATGCAGAAGTTTAAAAATCAATAACAGAGAAGTATCATTCGCAATCGACATACATGAAAGAAACGTATTTACATATAGACGTCTCGTGACACCTACATTCTTAAATAGAAAAACTTCTTAATTGTTAATTAAAAGAAAAAAAAAATAAAATAAAATGAGAAAATCAGTACGACGCTAGATTGGCACGCCACTAGAAGTTATTCATATAACGCGCCAAAGNNNATAGGAGAGCAAAAAAATAAATAAATAAATAAATAAAGAGAAGAACAGCAGGGAGGAAAATAAGTATACAAAAGTAATGAAAAACGCGTTCACTTACTCATTATTATTCTTATTATTACGAGTAATGTCATTCGGTTCGAATCTTTCTAAAAAATCAAATCTGAGTAGCTAATCGAGATGAGAGAAATCGTATAAATATTTTAGTAGTTCGTGAATCTCTATGCGAGAATCGTTACGCGGAAGAAAGAACAAACCAAGAAGGAACTGTAAAGAAAAGGATGAACTCGAAAAAAATTATTATTAGATGAGGCGAACACGGGGAATTAAAGGCAGAAACGGACAGTATGATATAAGTACCTATCAATTGAATCACTACCAAGAAAGAATAATACAAAGGGAACTAGATAAACGAGAAGAGGAAAGAGAAATAGTAAGAATAAAGAAGATATATATATATATATATATATGTTATTTAAATTGCGCGCCACAAAATGGTAAAGCGGCGGTCACAGTTTTGGTAATCGTTGAAATTAGATGAACTGCGTGCCACAATATTATTGACAAAACTTGAACAAATGAATTATGAAGTTATTGATTGAAAAAAAGAAAAGAAAAAAAAAACGGGAAATAAACATAGAC]

[+] EMBL BI510636             [CATTCTGATGTTGGAGCATTCCGTAGACGTCTTGTGATATCAGAAAAAAAAAAATAAATAAATAAATAAATAAATAAATATTCATATAGGCATCCCGTTTAAGTAAAGGAGCAAAAAAAAGATCACTGCGCTAGATTGGCACGCCCTTGTTAAGAGTTTAAAAAGAAAAAAAAATTAAAAAATGCAATGTAGTCACGGTATAAAAAAAAATAATAATAATAAATAAATAAATAAATAAATAAATAAGAGCGGTATTATAAATGTTACACTGATGCAGAAGTTTAAAAATCAATAACAGAGAAGTATCATTCGCAATCGACATACATGAAAGAAACGTATTTACATATAGACGTCTCGTGACACCTACATTCTTAAATAGAAAAACTTCTTAATTGTTAATTAAAAGAAAAAAAAAATAAAATAAAATGAGAAAATCAGTACGACGCTAGATTGGCACGCCACTAGAAGTTATTCATATAACGCGCCAAAGNNNATAGGAGAGCAAAAAAATAAATAAATAAATAAATAAAGAGAAGAACAGCAGGGAGGAAAATAAGTATACAAAAGTAATGAAAAACGCGTTCACTTACTCATTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BI510342             [                                                                                                                                                                                                                                                                                    GAAGTTTAAAAATCAATAACAGAGAAGTATCATTCGCAATCGACATACATGAAAGAAACGTATTTACATATAGACGTCTCGTGACACCTACATTCTTAAATAGAAAAACTTCTTAATTGTTAATTAAAAGAAAAAAAAAATAAAATAAAATGAGAAAATCAGTACGACGCTAGATTGGCACGCCACTAGAAGTTATTCATATAACGCGCCAAAGAGGATAGGAGAGCAAAAAAATAAATAAATAAATAAATAAAGAGAAGAACAGCAGGGAGGAAAATAAGTATACAAAAGTAATGAAAAACGCGTTCACTTATTCATTATTATTCTTATTATTACGAGTAATGTCATTCGGTTCGAATCTTTCTAAAAAATCAAATCTGAGTAGCTAATCGAGATGAGAGAAATCGTATAAATATTTTAGTAGTTCGTGAATCTCTATGCGAGAATCGTTACGCGGAAGAAAGAACAAACCAAGAAGGAACTGTAAAGAAAAGGATGAACTCGAAAAAAATTATTATTAGATGAGGCGAACACGGGGAATTAAAGGCAGAAACGGACAGTATGATATAAGTACCTATCA                                                                                                                                                                                                                                                                                    ]
[-] EMBL BE844627             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GTTCGTGAATCTCTATGCGAGAATCGTTACGCGGAAGAAAGAACAAACCAAGAAGGAACTGTAAAGAAAAGAATGAACTCGAAAAAAATTATTATTAGATGAGGCGAACACGGGGAATTAAAGGCAGAAACGGACAGTATGATATAAGTACCTATCAATTGAATCACTACCAAGAAAGAATAATACAAAGGGAACTAGATAAACGAGAAGAGGAAAGAGAAATAGTAAGAATAAAGAAGATATATATATATATATATATATGTTATTTAAATTGCGCGCCACAAAATGGTAAAGCGGCGGTCACAGTTTTGGTAATCGTTGAAATTAGATGAACTGCGTGCCACAATATTATTGACAAAACTTGAACAAATGAATTATGAAGTTATTGATTGAAAAAAAGAAAAGAAAAAAAAAACGGGAAATAAACATAGAC]




>consensus_619#0
CATTCTGATGTTGGAGCATTCCGTAGACGTCTTGTGATATCAGAAAAAAAAAAATAAATA
AATAAATAAATAAATAAATATTCATATAGGCATCCCGTTTAAGTAAAGGAGCAAAAAAAA
GATCACTGCGCTAGATTGGCACGCCCTTGTTAAGAGTTTAAAAAGAAAAAAAAATTAAAA
AATGCAATGTAGTCACGGTATAAAAAAAAATAATAATAATAAATAAATAAATAAATAAAT
AAATAAGAGCGGTATTATAAATGTTACACTGATGCAGAAGTTTAAAAATCAATAACAGAG
AAGTATCATTCGCAATCGACATACATGAAAGAAACGTATTTACATATAGACGTCTCGTGA
CACCTACATTCTTAAATAGAAAAACTTCTTAATTGTTAATTAAAAGAAAAAAAAAATAAA
ATAAAATGAGAAAATCAGTACGACGCTAGATTGGCACGCCACTAGAAGTTATTCATATAA
CGCGCCAAAGNNNATAGGAGAGCAAAAAAATAAATAAATAAATAAATAAAGAGAAGAACA
GCAGGGAGGAAAATAAGTATACAAAAGTAATGAAAAACGCGTTCACTTACTCATTATTAT
TCTTATTATTACGAGTAATGTCATTCGGTTCGAATCTTTCTAAAAAATCAAATCTGAGTA
GCTAATCGAGATGAGAGAAATCGTATAAATATTTTAGTAGTTCGTGAATCTCTATGCGAG
AATCGTTACGCGGAAGAAAGAACAAACCAAGAAGGAACTGTAAAGAAAAGGATGAACTCG
AAAAAAATTATTATTAGATGAGGCGAACACGGGGAATTAAAGGCAGAAACGGACAGTATG
ATATAAGTACCTATCAATTGAATCACTACCAAGAAAGAATAATACAAAGGGAACTAGATA
AACGAGAAGAGGAAAGAGAAATAGTAAGAATAAAGAAGATATATATATATATATATATAT
GTTATTTAAATTGCGCGCCACAAAATGGTAAAGCGGCGGTCACAGTTTTGGTAATCGTTG
AAATTAGATGAACTGCGTGCCACAATATTATTGACAAAACTTGAACAAATGAATTATGAA
GTTATTGATTGAAAAAAAGAAAAGAAAAAAAAAACGGGAAATAAACATAGAC

consensusID : consensus_619#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 351
fasta sequence 
                              [TTTTTTTTAATATCCTGTTATCTCGACTATCGTAGCGCCTTCACCCAGGAAACTACAAGGCCCCGGAGCGGCGTAGCTATTTTAAATTCTCGCTCTTAATAATGTCTATGTTTATTTCCCGTTTTTTTTTTCTTTTCTTTTTTCCAATCAATAACTTCATAATTCATTTGTTCAAGTTTTGTCAATAATACAAAGGGAACTAGATAAACGAGAAGAGGAAAGAGAAATAGTAAGAATAAATAACATATATATATATATATATATGTTATTTAAATTGCGCGCCACAAAATGGTAAAGCGGCGGTCACAGTTTTGGTAATCGTTGAAATTAGATGAACTGCGTGCCACAATA]

[-] EMBL BI510644             [TTTTTTTTAATATCCTGTTATCTCGACTATCGTAGCGCCTTCACCCAGGAAACTACAAGGCCCCGGAGCGGCGTAGCTATTTTAAATTCTCGCTCTTAATAATGTCTATGTTTATTTCCCGTTTTTTTTTTCTTTTCTTTTTTCCAATCAATAACTTCATAATTCATTTGTTCAAGTTTTGTCAATAATACAAAGGGAACTAGATAAACGAGAAGAGGAAAGAGAAATAGTAAGAATAAATAACATATATATATATATATATATGTTATTTAAATTGCGCGCCACAAAATGGTAAAGCGGCGGTCACAGTTTTGGTAATCGTTGAAATTAGATGAACTGCGTGCCACAATA]




>consensus_619#1
TTTTTTTTAATATCCTGTTATCTCGACTATCGTAGCGCCTTCACCCAGGAAACTACAAGG
CCCCGGAGCGGCGTAGCTATTTTAAATTCTCGCTCTTAATAATGTCTATGTTTATTTCCC
GTTTTTTTTTTCTTTTCTTTTTTCCAATCAATAACTTCATAATTCATTTGTTCAAGTTTT
GTCAATAATACAAAGGGAACTAGATAAACGAGAAGAGGAAAGAGAAATAGTAAGAATAAA
TAACATATATATATATATATATATGTTATTTAAATTGCGCGCCACAAAATGGTAAAGCGG
CGGTCACAGTTTTGGTAATCGTTGAAATTAGATGAACTGCGTGCCACAATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_619#0      CATTCTGATGTTGGAGCATTCCGTAGACGTCTTGTGATATCAGAAAAAAAAAAATAAATA 60
consensus_619#1      ------------------------------------------------------------
                                                                                 

consensus_619#0      AATAAATAAATAAATAAATATTCATATAGGCATCCCGTTTAAGTAAAGGAGCAAAAAAAA 120
consensus_619#1      ------------------------------------------------------------
                                                                                 

consensus_619#0      GATCACTGCGCTAGATTGGCACGCCCTTGTTAAGAGTTTAAAAAGAAAAAAAAATTAAAA 180
consensus_619#1      ------------------------------------------------------------
                                                                                 

consensus_619#0      AATGCAATGTAGTCACGGTATAAAAAAAAATAATAATAATAAATAAATAAATAAATAAAT 240
consensus_619#1      ------------------------------------------------------------
                                                                                 

consensus_619#0      AAATAAGAGCGGTATTATAAATGTTACACTGATGCAGAAGTTTAAAAATCAATAACAGAG 300
consensus_619#1      ------------------------------------------------------------
                                                                                 

consensus_619#0      AAGTATCATTCGCAATCGACATACATGAAAGAAACGTATTTACATATAGACGTCTCGTGA 360
consensus_619#1      ------------------------------------------------------------
                                                                                 

consensus_619#0      CACCTACATTCTTAAATAGAAAAACTTCTTAATTGTTAATTAAAAGAAAAAAAAAATAAA 420
consensus_619#1      ------------------------------------------------------------
                                                                                 

consensus_619#0      ATAAAATGAGAAAATCAGTACGACGCTAGATTGGCACGCCACTAGAAGTTATTCATATAA 480
consensus_619#1      ------------------------------------------------------------
                                                                                 

consensus_619#0      CGCGCCAAAGNNNATAGGAGAGCAAAAAAATAAATAAATAAATAAATAAAGAGAAGAACA 540
consensus_619#1      ------------------------------------------------------------
                                                                                 

consensus_619#0      GCAGGGAGGAAAATAAGTATACAAAAGTAATGAAAAACGCGTTCACTTACTCATTATTAT 600
consensus_619#1      ------------------------------------------------------------
                                                                                 

consensus_619#0      TCTTATTATTACGAGTAATGTCATTCGGTTCGAATCTTTCTAAAAAATCAAATCTGAGTA 660
consensus_619#1      ------------------------------------------------------------
                                                                                 

consensus_619#0      GCTAATCGAGATGAGAGAAATCGTATAAATATTTTAGTAGTTCGTGAATCTCTATGCGAG 720
consensus_619#1      -------------------TTTTTTTTAATATCCTGTTATCTCGA------CTATCGTAG 35
                                         *  * * *****  *  **  ***       ****   **

consensus_619#0      AATCGTTACGCGGAAGAAAGAACAAACCAAGAAGGAACTGTAAAG---AAAAGGATGAAC 777
consensus_619#1      CGCCTTCACCCAGGAAACTACAAGGCCCCGGAGCGGCGTAGCTATTTTAAATTCTCGCTC 95
                        * * ** * * * *    *    **  **  *   *    *    ***     *  *

consensus_619#0      TCGAAAAAAATTATTATTAGATGAGGCGAACACGGGGAATTAAAGGCAGAAACGGACAGT 837
consensus_619#1      TTAATAATGTCTATGTTTATTTCCCGTTTTTTTTTTCTTTTCTTTTTTCCAATCAATAAC 155
                     *  * **    ***  ***  *   *             **         **   * *  

consensus_619#0      ATGATATAAGTACCTATCAATTGAATCACTACCAAGAAAGAATAATACAAAGGGAACTAG 897
consensus_619#1      TTCATA-----ATTCATTTGTTCAAGTTTTGTCAA-------TAATACAAAGGGAACTAG 203
                      * ***     *   **   ** **    *  ***       ******************

consensus_619#0      ATAAACGAGAAGAGGAAAGAGAAATAGTAAGAATAAAGAAGATATATATATATATATATA 957
consensus_619#1      ATAAACGAGAAGAGGAAAGAGAAATAGTAAGAATAAATA--ACATATATATATATATATA 261
                     ************************************* *  * *****************

consensus_619#0      TATGTTATTTAAATTGCGCGCCACAAAATGGTAAAGCGGCGGTCACAGTTTTGGTAATCG 1017
consensus_619#1      TATGTTATTTAAATTGCGCGCCACAAAATGGTAAAGCGGCGGTCACAGTTTTGGTAATCG 321
                     ************************************************************

consensus_619#0      TTGAAATTAGATGAACTGCGTGCCACAATATTATTGACAAAACTTGAACAAATGAATTAT 1077
consensus_619#1      TTGAAATTAGATGAACTGCGTGCCACAATA------------------------------ 351
                     ******************************                              

consensus_619#0      GAAGTTATTGATTGAAAAAAAGAAAAGAAAAAAAAAACGGGAAATAAACATAGAC 1132
consensus_619#1      -------------------------------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)