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Apis mellifera
cluster # 638 cluster # 638       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_638#0 length = 848 sequences # 3  
 consensus_638#1 length = 437 sequences # 1  
consensusID : consensus_638#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 848
fasta sequence 
                              [GGAATGAATGGGGTTTGAGTGTGTGTGTGCACGCCAGAAGAGAATCGAGAATCGAACGATTGATAAATCGGTAAAGACGCGAGAGGCAAAAAGTTGAACGCGAGGGAGAATGGCGATTTTGCGCGCGATAAGTGAGAAAGAAAGAAAGAAAGAAAGAGAGGAAGGACGGAGAAACGAACGAACGAACGAAAAAAAGAGGAAATGTTCAGCTTGCGGGGGCAAGGAAGCATAACCTGGCAAAAGCGGAAGCAGTTCACGGTGACGAGACTTTAGACTGATCTAGGTACTAGCGTTACGATATTGGCCCTACCCCAGCGTTCAAGGCGCCCCAATATTATATCATTTATCCTTTGCTATTTTATACAAGTGACCGGTGTGGCAGCTGGGGTGCCTGGGGGTTATCGGTCGCATTTAGGATAATGCACCACTGTGGCTGACGATGCTGTAGCCGCGCGCACCCTTTTACCCGGTCATTGCCCTAATTTGCGGCACACATCCTTGGGAACTTGACTTTTCTTGGTTGGCCCGTGTCAAGCGGATGTTGTGTGATTTTTGGGTCGCTCAATTTATGTTAATAACGGCCCAAAAAAGACGTGTTTTTTAATTATATATAAATATATTATATATTATATTCCTGCGGATATGCATTTTGTGACGTGATGTTATTTAGCACTAATGAGGAAAACAACAAAAGTGAACAATTGTACGGAAAGAAAATGAAAGAAAAATGTTAAAAAAAAAAAAAAAATGAAAAAATGTACGTAACACTATTCACATGAACATATATATGAACGGTTTATGTTTCTCGCGCCACACATGCCACATGTCAGCTCCATGGCTAAAAGTGA]

[+] EMBL BI513121             [GGAATGAATGGGGTTTGAGTGTGTGTGTGCACGCCAGAAGAGAATCGAGAATCGAACGATTGATAAATCGGTAAAGACGCGAGAGGCAAAAAGTTGAACGCGAGGGAGAATGGCGATTTTGCGCGCGATAAGTGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAACGAAGAAACGAACGAACGAACGAAAAAAAGAGGAAATGTTCAGCTTGCGGGGGCAAGGAAGCATAACCTGGCAAAAGCGGAAGCAGTTCACGGTGACGAGACTTTAGACTGATCTAGGTACTAGCGTTACGATATTGGCCCTACCCCAGCGTTCAAGGCGCCCCAATATTATATCATTTATCCTTTGCTATTTTATACAAGTGACCGGTGTGGCAGCTGGGGTGCCTGGGGGTTATCGGTCGCATTTAGGATAATGCACCACTGTGGCTGACGATGCTGTAGCCGCGCGCACCCTTTTACCCGGTCATTGCCCTAATTTGCGGCACACATCCTTGGG                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL BE844278             [                                                                                                                                                            AGAAGAAGGACGGAGAAACGAACGAACGAACG AAAAAAGAGG AATGTTCAGCTTGCGGGGGCAAGGAAGCATAACCTGGCAAAAGCGGAAGCAGTTCACGGTGACGAGACTTTAGACTGATCTAGGTACTAGCGTTACGATATTGGCCCTACCCCAGCGTTCAAGGCGCCCCAATATTATATCATTTATCCTTTGCTATTTTATACAAGTGACCGGTGTGGCAGCTGGGGTGCCTGGGGGTTATCGGTCGCATTTAGGATAATGCACCACTGTGGCTGACGATGCTGTAGCCGCGCGCACCCTTTTACCCGGTCATTGCCCTAATTTGCGGCACACATCCTTGGGAACTTGACTTTTCTTGGTTGGCCCGTGTCAAGCGGATGTTGTGTGATTTTTGGGTCGCTCAATTTATGTTAATAACGGCCC AAAAAGACGTGTTTTTTAATTATATATAAATATATTATATATTATATTCCTGCGGATATGCATTTTGTGACGTGATGTTATTTAGCACTAATGAGGAAAACAACAAAAGTGAACAATTGTACGGAAAGAAAATGAAAGAAAAATGTTAAAAAAAAAAAAAAAATGAAAAAATGTACGTAACACTATTCACATGAACATATATATGAACGGTTTATGTTTCTCGCGCCACACATGCCACATGTCAGCTCCATGGCTAAAAGTGA]
[+] EMBL BI512417             [                                                                                                                                                                                                                                                          AGTTCACGGTGACGAGACTTTAGACTGATCTAGGTACTAGCGTTACGATATTGGCCCTACCCCAGCGTTCAAGGCGCCCCAATATTATATCATTTATCCTTTGCTATTTTATACAAGTGACCGGTGTGGCAGCTGGGGTGCCTGGGGGTTATCGGTCGCATTTAGGATAATGCACCACTGTGGCTGACGATGCTGTAGCCGCGCGCACCCTTTTACCCGGTCATTGCCCTAATTTGCGGCACACATCCTTGGGAACTTGACTTTTCTTGGTTGGCCCGTGTCAAGCGGATGTTGTGTGATTTTTGGGTCGCTCAATTTATGTTAATAACGGCCCAAAAAAGACGTGTTTTTTAATTATATATAAATATATTATATATTATATTCCTGCGGATATGCATTTTGTGACGTGATGTTATTTAGCACTAATGAGGAAAACAACAAAAGTGAACAATTGTACGGAAAGAAAATGAAAGAAAAATGTTAAAAAAAA                                                                                                            ]




>consensus_638#0
GGAATGAATGGGGTTTGAGTGTGTGTGTGCACGCCAGAAGAGAATCGAGAATCGAACGAT
TGATAAATCGGTAAAGACGCGAGAGGCAAAAAGTTGAACGCGAGGGAGAATGGCGATTTT
GCGCGCGATAAGTGAGAAAGAAAGAAAGAAAGAAAGAGAGGAAGGACGGAGAAACGAACG
AACGAACGAAAAAAAGAGGAAATGTTCAGCTTGCGGGGGCAAGGAAGCATAACCTGGCAA
AAGCGGAAGCAGTTCACGGTGACGAGACTTTAGACTGATCTAGGTACTAGCGTTACGATA
TTGGCCCTACCCCAGCGTTCAAGGCGCCCCAATATTATATCATTTATCCTTTGCTATTTT
ATACAAGTGACCGGTGTGGCAGCTGGGGTGCCTGGGGGTTATCGGTCGCATTTAGGATAA
TGCACCACTGTGGCTGACGATGCTGTAGCCGCGCGCACCCTTTTACCCGGTCATTGCCCT
AATTTGCGGCACACATCCTTGGGAACTTGACTTTTCTTGGTTGGCCCGTGTCAAGCGGAT
GTTGTGTGATTTTTGGGTCGCTCAATTTATGTTAATAACGGCCCAAAAAAGACGTGTTTT
TTAATTATATATAAATATATTATATATTATATTCCTGCGGATATGCATTTTGTGACGTGA
TGTTATTTAGCACTAATGAGGAAAACAACAAAAGTGAACAATTGTACGGAAAGAAAATGA
AAGAAAAATGTTAAAAAAAAAAAAAAAATGAAAAAATGTACGTAACACTATTCACATGAA
CATATATATGAACGGTTTATGTTTCTCGCGCCACACATGCCACATGTCAGCTCCATGGCT
AAAAGTGA

consensusID : consensus_638#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 437
fasta sequence 
                              [TCGTGCGAATGCATTCGTTTGAGTGCCGAATGAAAAAAACGGGAATGAATGGGGTTTGAGTGTGTGTGTGCACGCCAGAAGAGAATCGAGAATCGAACGATTGATAAATCGGTAAAGACGCGAGAGGCAAAAAGTTGAACGCGAGGGAGAATGGCGATTTTGCGCGCGATAAGTGAGAAAATAAGTGAAAACGAAGGAGAAAACGAAGGTGAAAGGGTGTACAAGTGTGCTTAGGTATGCGCGAGAGAATGCACGAGAGTATAGAGGTTAAACGAGGGAGAAGATTCACACGCTAAATTAATTGCACGGGGGAAGAGGGAGATAAATAGAACGAACGGCGATCGGCGCGACGGTGAACGCCGGTGATTCAAAGGGACGACGTTTCACGGTTTCCCGCGAAAATTTTAGGGTGGAACGTTGTTGGATTCGTGTGGATT]

[+] EMBL BI511017             [TCGTGCGAATGCATTCGTTTGAGTGCCGAATGAAAAAAACGGGAATGAATGGGGTTTGAGTGTGTGTGTGCACGCCAGAAGAGAATCGAGAATCGAACGATTGATAAATCGGTAAAGACGCGAGAGGCAAAAAGTTGAACGCGAGGGAGAATGGCGATTTTGCGCGCGATAAGTGAGAAAATAAGTGAAAACGAAGGAGAAAACGAAGGTGAAAGGGTGTACAAGTGTGCTTAGGTATGCGCGAGAGAATGCACGAGAGTATAGAGGTTAAACGAGGGAGAAGATTCACACGCTAAATTAATTGCACGGGGGAAGAGGGAGATAAATAGAACGAACGGCGATCGGCGCGACGGTGAACGCCGGTGATTCAAAGGGACGACGTTTCACGGTTTCCCGCGAAAATTTTAGGGTGGAACGTTGTTGGATTCGTGTGGATT]




>consensus_638#1
TCGTGCGAATGCATTCGTTTGAGTGCCGAATGAAAAAAACGGGAATGAATGGGGTTTGAG
TGTGTGTGTGCACGCCAGAAGAGAATCGAGAATCGAACGATTGATAAATCGGTAAAGACG
CGAGAGGCAAAAAGTTGAACGCGAGGGAGAATGGCGATTTTGCGCGCGATAAGTGAGAAA
ATAAGTGAAAACGAAGGAGAAAACGAAGGTGAAAGGGTGTACAAGTGTGCTTAGGTATGC
GCGAGAGAATGCACGAGAGTATAGAGGTTAAACGAGGGAGAAGATTCACACGCTAAATTA
ATTGCACGGGGGAAGAGGGAGATAAATAGAACGAACGGCGATCGGCGCGACGGTGAACGC
CGGTGATTCAAAGGGACGACGTTTCACGGTTTCCCGCGAAAATTTTAGGGTGGAACGTTG
TTGGATTCGTGTGGATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_638#0      -----------------------------------------GGAATGAATGGGGTTTGAG 19
consensus_638#1      TCGTGCGAATGCATTCGTTTGAGTGCCGAATGAAAAAAACGGGAATGAATGGGGTTTGAG 60
                                                              *******************

consensus_638#0      TGTGTGTGTGCACGCCAGAAGAGAATCGAGAATCGAACGATTGATAAATCGGTAAAGACG 79
consensus_638#1      TGTGTGTGTGCACGCCAGAAGAGAATCGAGAATCGAACGATTGATAAATCGGTAAAGACG 120
                     ************************************************************

consensus_638#0      CGAGAGGCAAAAAGTTGAACGCGAGGGAGAATGGCGATTTTGCGCGCGATAAGTGAGAAA 139
consensus_638#1      CGAGAGGCAAAAAGTTGAACGCGAGGGAGAATGGCGATTTTGCGCGCGATAAGTGAGAAA 180
                     ************************************************************

consensus_638#0      GAAAGAAAGAAAGAAAGAGAGGA--AGGACGGAGAAACGAACGAACGAACGAAAAAAAGA 197
consensus_638#1      ATAAGTGAAAACGAAGGAGAAAACGAAGGTGAAAGGGTGTACAAGTGTGCTTAGGTATGC 240
                       ***  * ** *** ****  *  * *  * *     * ** *  *  *  *   * * 

consensus_638#0      GGAAATGTTCAGCTTGCGGGGGCAAGGAAGCATAACCTGGCAAAAGCGGAAGCAGTTCAC 257
consensus_638#1      GCGAGAG---AATGCACGAGAGTATAGAGGTTAAACGAGGGAGAAG--------ATTCAC 289
                     *  *  *   *     ** * * *  ** *   ***  ** * ***         *****

consensus_638#0      GGTGACGAGACTTTAGACTGATCTAGGTACTAGCGTTACGATATTGGCCCTACCCCAGCG 317
consensus_638#1      ----ACGCTAAATTA-ATTGCACGGGGGAAGAGGGAGATAA-ATAGAACGAAC---GGCG 340
                         ***  *  *** * **  *  ** *  ** *  *  * ** *  *  **    ***

consensus_638#0      TTCAAGGCGCCCCAATATTATATCATTTATCCTTTGCTATTTTATACAAGTGACCGGTGT 377
consensus_638#1      ATCGGCGCGACGGTGAACGCCGGTGATTCAAAGGGACGACGTTTCACG-GTTTCCCGCGA 399
                      **   *** *     *         **        * *  **  **  **  ** * * 

consensus_638#0      GGCAGCTGGGGTGCCTGGGGGTTATCGGTCGCATTTAGGATAATGCACCACTGTGGCTGA 437
consensus_638#1      AAATTTTAGGGTG---GAACGTTGTTGGATTCGTGTGGATT------------------- 437
                           * *****   *   *** * **   * * * *  *                   

consensus_638#0      CGATGCTGTAGCCGCGCGCACCCTTTTACCCGGTCATTGCCCTAATTTGCGGCACACATC 497
consensus_638#1      ------------------------------------------------------------
                                                                                 

consensus_638#0      CTTGGGAACTTGACTTTTCTTGGTTGGCCCGTGTCAAGCGGATGTTGTGTGATTTTTGGG 557
consensus_638#1      ------------------------------------------------------------
                                                                                 

consensus_638#0      TCGCTCAATTTATGTTAATAACGGCCCAAAAAAGACGTGTTTTTTAATTATATATAAATA 617
consensus_638#1      ------------------------------------------------------------
                                                                                 

consensus_638#0      TATTATATATTATATTCCTGCGGATATGCATTTTGTGACGTGATGTTATTTAGCACTAAT 677
consensus_638#1      ------------------------------------------------------------
                                                                                 

consensus_638#0      GAGGAAAACAACAAAAGTGAACAATTGTACGGAAAGAAAATGAAAGAAAAATGTTAAAAA 737
consensus_638#1      ------------------------------------------------------------
                                                                                 

consensus_638#0      AAAAAAAAAAATGAAAAAATGTACGTAACACTATTCACATGAACATATATATGAACGGTT 797
consensus_638#1      ------------------------------------------------------------
                                                                                 

consensus_638#0      TATGTTTCTCGCGCCACACATGCCACATGTCAGCTCCATGGCTAAAAGTGA 848
consensus_638#1      ---------------------------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)