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Apis mellifera
cluster # 653 cluster # 653       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_653#0 length = 453 sequences # 1  
 consensus_653#1 length = 436 sequences # 2  
consensusID : consensus_653#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 453
fasta sequence 
                              [TTTTAAATAACCTAGATGCTTGATATCTGTGTGTCTTTGGTAGGCCGTATTCGCTATTTCTTAGCGCCTATAAGGGTGGTAATTCGTATGCTGGGTCAAGGAAAACCGTTGGGGACCTGGGGCTGCGTCTCCGTTCGGAATGAATGTCGGACTTCCAGTTTCGGTGTTTTTGAACTTTGGGATCGGGGTGTTGTCTTGGTTGCTTTCTCCTCCTTGATACGAACGCTGAGGATAACTGGTGTCAGCGTAATTACCATATGCAGAGTACCCAGTATAATCCGGAGTTTTAGCTGAACTGCTACTGGACCCAGGTGCACCTGAGCCGGTGGTCTGTCGTGAATACATGTCACCCTGCGGGCCAGAGGGGTTCGAGTTGGAGTTGGGCTGCGAGGAATTAGGCTGAGGGGGCTGAGGTGGTGGCTGAGTCCCAGGAGGGGGCCCATTTTGTGGCAT]

[+] EMBL BI514645             [TTTTAAATAACCTAGATGCTTGATATCTGTGTGTCTTTGGTAGGCCGTATTCGCTATTTCTTAGCGCCTATAAGGGTGGTAATTCGTATGCTGGGTCAAGGAAAACCGTTGGGGACCTGGGGCTGCGTCTCCGTTCGGAATGAATGTCGGACTTCCAGTTTCGGTGTTTTTGAACTTTGGGATCGGGGTGTTGTCTTGGTTGCTTTCTCCTCCTTGATACGAACGCTGAGGATAACTGGTGTCAGCGTAATTACCATATGCAGAGTACCCAGTATAATCCGGAGTTTTAGCTGAACTGCTACTGGACCCAGGTGCACCTGAGCCGGTGGTCTGTCGTGAATACATGTCACCCTGCGGGCCAGAGGGGTTCGAGTTGGAGTTGGGCTGCGAGGAATTAGGCTGAGGGGGCTGAGGTGGTGGCTGAGTCCCAGGAGGGGGCCCATTTTGTGGCAT]




>consensus_653#0
TTTTAAATAACCTAGATGCTTGATATCTGTGTGTCTTTGGTAGGCCGTATTCGCTATTTC
TTAGCGCCTATAAGGGTGGTAATTCGTATGCTGGGTCAAGGAAAACCGTTGGGGACCTGG
GGCTGCGTCTCCGTTCGGAATGAATGTCGGACTTCCAGTTTCGGTGTTTTTGAACTTTGG
GATCGGGGTGTTGTCTTGGTTGCTTTCTCCTCCTTGATACGAACGCTGAGGATAACTGGT
GTCAGCGTAATTACCATATGCAGAGTACCCAGTATAATCCGGAGTTTTAGCTGAACTGCT
ACTGGACCCAGGTGCACCTGAGCCGGTGGTCTGTCGTGAATACATGTCACCCTGCGGGCC
AGAGGGGTTCGAGTTGGAGTTGGGCTGCGAGGAATTAGGCTGAGGGGGCTGAGGTGGTGG
CTGAGTCCCAGGAGGGGGCCCATTTTGTGGCAT

consensusID : consensus_653#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 436
fasta sequence 
                              [TATTTTTTTATATATTTTTTTTTTTTTCTTTTTAAATATGTAATATGAAATAACCCACGAGCAAGGCCAAGCCATTCAGCGCATCTCTCCATCACGGGTCAATTAAAATGGTCATGAGGTGGGCCACTCTTTGAAATCAAAGCCTTGCTGGGGTTTAGGGGCGCTGGCGGCATACCCACCTTGGTTGCTTTCTCCTCCTTGATACGAACGCTGAGGATAACTGGTGTCAGCGTAATTACCATATGCAGAGTACCCAGTATAATCCGGAGTTTTAGCTGAACTGCTACTGGACCCAGGTGCACCTGAGCCGGTGGTCTGTCGTGAATACATGTCACCCTGCGGGCCAGNGGGGTTCGAGTTGGAGTTGGGCTGCGAGGAATTAGGCTGAGGGGGCTGAGGTGGTGGCTGAGTCCCAGGAGGGGGCCCATTTTGTGGC]

[+] EMBL BI514813             [TATTTTTTTATATATTTTTTTTTTTTTCTTTTTAAATATGTAATATGAAATAACCCACGAGCAAGGCCAAGCCATTCAGCGCATCTCTCCATCACGGGTCAATTAAAATGGTCATGAGGTGGGCCACTCTTTGAAATCAAAGCCTTGCTGGGGTTTAGGGGCGCTGGCGGCATACCCACCTTGGTTGCTTTCTCCTCCTTGATACGAACGCTGAGGATAACTGGTGTCAGCGTAATTACCATATGCAGAGTACCCAGTATAATCCGGAGTTTTAGCTGAACTGCTACTGGACCCAGGTGCACCTGAGCCGGTGGTCTGTCGTGAATACATGTCACCCTGCGGGCCAGNGGGGTTCGAGTTGGAGTTGGGCTGCGAGGAATTAGGCTGAGGGGGCTGAGGTGGTGGCTGAGTCCCAGGAGGGGGCCCATTTTGTGGC]
[+] EMBL BI514712             [                       TTTTCTTTTTAAATATGTAATATGAAATAACCCACGAGCAAGGCCAAGCCATTCAGCGCATCTCTCCATCACGGGTCAATTAAAATGGTCATGAGGTGGGCCACTCTTTGAAATCAAAGCCTTGCTGGGGTTTAGGGGCGCTGGCGGCATACCCACCTTGGTTGCTTTCTCCTCCTTGATACGAACGCTGAGGATAACTGGTGTCAGCGTAATTACCATATGCAGAGTACCCAGTATAATCCGGAGTTTTAGCTGAACTGCTACTGGACCCA                                                                                                                                             ]




>consensus_653#1
TATTTTTTTATATATTTTTTTTTTTTTCTTTTTAAATATGTAATATGAAATAACCCACGA
GCAAGGCCAAGCCATTCAGCGCATCTCTCCATCACGGGTCAATTAAAATGGTCATGAGGT
GGGCCACTCTTTGAAATCAAAGCCTTGCTGGGGTTTAGGGGCGCTGGCGGCATACCCACC
TTGGTTGCTTTCTCCTCCTTGATACGAACGCTGAGGATAACTGGTGTCAGCGTAATTACC
ATATGCAGAGTACCCAGTATAATCCGGAGTTTTAGCTGAACTGCTACTGGACCCAGGTGC
ACCTGAGCCGGTGGTCTGTCGTGAATACATGTCACCCTGCGGGCCAGNGGGGTTCGAGTT
GGAGTTGGGCTGCGAGGAATTAGGCTGAGGGGGCTGAGGTGGTGGCTGAGTCCCAGGAGG
GGGCCCATTTTGTGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_653#0      TTTTAAATAACCTAGATGCTTGATATCTGTGTGTCTTTGGTAGGCCGTATTCGCTATTTC 60
consensus_653#1      ----TATTTTTTTATATATTTTTTTTTTTTTCTTTTTAAATATGTAATATGAAATAACCC 56
                          * *    ** **  **  * * * *   * **   ** *   ***    **   *

consensus_653#0      TT-AGCGCCTATAAGGGTGGTAATTCGTATGCTGGGTCAAGGAAAACCGTTGGGGACCTG 119
consensus_653#1      ACGAGCAAGGCCAAGCCATTCAGCGCATCT-CTCCATCACGGGTCAATTAAAATGGTCAT 115
                        ***      ***      *   * * * **   *** **   *        *  *  

consensus_653#0      GGGCTGCGTCTCCGTTCGGAATGAATGTCGGACTTCCAGTTTCGGTGTTTTTGAACTTTG 179
consensus_653#1      GAGGTGGGCCACTCTTTGAAATCAAAGCCTTGCT---------GGGGTTTAGGGGCGCTG 166
                     * * ** * * *  ** * *** ** * *   **         ** ****  *  *  **

consensus_653#0      GGATCGGGGTGTT-GTCTTGGTTGCTTTCTCCTCCTTGATACGAACGCTGAGGATAACTG 238
consensus_653#1      G---CGGCATACCCACCTTGGTTGCTTTCTCCTCCTTGATACGAACGCTGAGGATAACTG 223
                     *   ***  *      ********************************************

consensus_653#0      GTGTCAGCGTAATTACCATATGCAGAGTACCCAGTATAATCCGGAGTTTTAGCTGAACTG 298
consensus_653#1      GTGTCAGCGTAATTACCATATGCAGAGTACCCAGTATAATCCGGAGTTTTAGCTGAACTG 283
                     ************************************************************

consensus_653#0      CTACTGGACCCAGGTGCACCTGAGCCGGTGGTCTGTCGTGAATACATGTCACCCTGCGGG 358
consensus_653#1      CTACTGGACCCAGGTGCACCTGAGCCGGTGGTCTGTCGTGAATACATGTCACCCTGCGGG 343
                     ************************************************************

consensus_653#0      CCAGAGGGGTTCGAGTTGGAGTTGGGCTGCGAGGAATTAGGCTGAGGGGGCTGAGGTGGT 418
consensus_653#1      CCAGNGGGGTTCGAGTTGGAGTTGGGCTGCGAGGAATTAGGCTGAGGGGGCTGAGGTGGT 403
                     **** *******************************************************

consensus_653#0      GGCTGAGTCCCAGGAGGGGGCCCATTTTGTGGCAT 453
consensus_653#1      GGCTGAGTCCCAGGAGGGGGCCCATTTTGTGGC-- 436
                     *********************************


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)