cluster # 709

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Apis mellifera
cluster # 709 cluster # 709 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_709#0 length = 574 sequences # 2

consensus_709#1 length = 446 sequences # 1

consensusID : consensus_709#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 574
fasta sequence

                              [CAAGGGAAACACCGTGTGTATATGTATATATGTATGCGCGTGTGTACGTGGTGTGTACGTGTCAGTCGAGAATTTTAAAAAACAAGAGTTGTGGTTAGGAAGTTTTTCGGTGTCGGTGTTTCTCAATCACAAAATTAACACGTTTGATTATGGTTCACAGATGGAACAGTGCGTTTCATCATCATCGTGATCTATCAAATTGACTGGTACGAGGATCCATCGACACGGATCACCGACACTGTTTCTGTTCAGCCGCGACAGGATTCACAGAACCGACAGACGCCTTCTTCGACGACGACCTCTTCCCATCCTGCTTCGAGCCTGCGTTGCCGCACTCCTTGCTTCCGCTCGACACCTTGCACGACTTCCCGCCGACCTTCTGCTCCTTGCTCGACTCCGTCACCTTGTCCAGCTCGGCCATCGCCTCCTGTATAGCGTTCTCCAGCTGCATGTTCAATTTACGACTTCACCTAAACGGTCTTCGCGCAGGGTGGAATGCATGGAATGGATGGAGTCCAGCTTTCGCTTGATTCCGCGGCCGAGGGCATGTTCCCTGCCCTCGCACCTCACTGTG]

[+] EMBL BI508509             [CAAGGGAAACACCGTGTGTATATGTATATATGTATGCGCATGTGT     GTGTGTACGTGTCAGTCGAGAATTTTAAAAAACAAGAGTTGTGG  AGGAAGTTTTTCGGTGTCGGTGTTTCTCAATCACAAAATTAACACGTTTGATTATGGTTCACAGATGGAACAGTGCGTTTCATCATCATCGTGATCTATCAAATTGACTGGTACGAGGATCCATCGACACGGATCACCGACACTGTTTCTGTTCAGCCGCGACAGGATTCACAGAACCGACAGACGCCTTCTTCGATGACGACCTCTTCCCATCCTGCTTCGAGCCTGCGTTGCCGCACTCCTTGCTTCCGCTCGACACCTTGCACGACTTCCCGCCGACCTTCTGCTCCTTGCTCGACTCCGTCACCTTGTCCAGCTCAGCCATCGCCTCCTGTATAGCGTTCTCCAGCTGCATGTTCAATTTACGACTTTTCCTAAACTTTTTTCGCGCACGGTGTTA                                                                              ]
[-] EMBL BI507708             [                                 ATGCGCGTGTGTACGTGTTATGTACGTGTCAGTCGAGAATTTTAAAAAACAAGAGTTGTAGTTCGGAAGTTTTTCGGTGTCGGTGTTTCTCAATCACAAAATTAACACGTTTGATTATGGTTCACAGATGGAACAGTGCGTTT ATCATCATCGTGATCTATCAAATTGACTGGTACGAGGATCCATCGACACGGATCACCGACACTGTTTCTGTTCAGCCGCGACAGGATTCACAGAACCGACAGACGCCTTCTTCGACGACGACCTCTTCCCATCCTGCTTCGAGCCTGCGTTGCCGCACTCCTTGCTTCCGCTCGACACCTTGCACGACTTCCCGCCGACCTTCTGCTCCTTGCTCGACTCCGTCACCTTGTCCAGCTCGGCCATCGCCTCCTGTATAGCGTTCTCCAGCTGCATGTTCAATTTACGACTTCATCT   TGGTCTTCATGCAGGGTAGAATGCATGGAATGGATGGAGTCCAGCTTTCGCTTGATTCCGCGGCCGAGGGCATGTTCCCTGCCCTCGCACCTCACTGTG]




>consensus_709#0
CAAGGGAAACACCGTGTGTATATGTATATATGTATGCGCGTGTGTACGTGGTGTGTACGT
GTCAGTCGAGAATTTTAAAAAACAAGAGTTGTGGTTAGGAAGTTTTTCGGTGTCGGTGTT
TCTCAATCACAAAATTAACACGTTTGATTATGGTTCACAGATGGAACAGTGCGTTTCATC
ATCATCGTGATCTATCAAATTGACTGGTACGAGGATCCATCGACACGGATCACCGACACT
GTTTCTGTTCAGCCGCGACAGGATTCACAGAACCGACAGACGCCTTCTTCGACGACGACC
TCTTCCCATCCTGCTTCGAGCCTGCGTTGCCGCACTCCTTGCTTCCGCTCGACACCTTGC
ACGACTTCCCGCCGACCTTCTGCTCCTTGCTCGACTCCGTCACCTTGTCCAGCTCGGCCA
TCGCCTCCTGTATAGCGTTCTCCAGCTGCATGTTCAATTTACGACTTCACCTAAACGGTC
TTCGCGCAGGGTGGAATGCATGGAATGGATGGAGTCCAGCTTTCGCTTGATTCCGCGGCC
GAGGGCATGTTCCCTGCCCTCGCACCTCACTGTG

consensusID : consensus_709#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 446
fasta sequence

                              [GAGTCGACGGTTACTACTGGGATCCAGATCTATACGTCAGAGACGTTGAAGCAAGCCGAAGGTGTGGTGAGCACAGTGAGGTGCGAGGGCAGGGAACATGCCCTCGGCCGCGGAATCAAGCGAAAGCTGGACTCCATCCATTCCATGCATTCTACCCTGCATGAAGACCAAGATGTAGCCGAGGCAAAGTCGGAGGAGAAGAGCCAGAGGAAACTGGAGGTGGGTGAGCTAGTATGGGGCGCCGCAAGAGGAAGTCCGGCGTGGCCGGGCAAGGTCGAGTCTTNGNGCCCACCGGGCACCATGACGGTGTGGGTCCGTTGGTACGGGGGCGGGGGCGGTCGGAGCCAGGTCGAGGTCAAGGCTCTCAAGTCCCTCTCCGAAGGCCTCGAGGCGCACCACCGTGCGCGAAAAAAGTTTAGGAAAAGTCGTAAATTGAACATGCAGCT]

[+] EMBL BI513703             [GAGTCGACGGTTACTACTGGGATCCAGATCTATACGTCAGAGACGTTGAAGCAAGCCGAAGGTGTGGTGAGCACAGTGAGGTGCGAGGGCAGGGAACATGCCCTCGGCCGCGGAATCAAGCGAAAGCTGGACTCCATCCATTCCATGCATTCTACCCTGCATGAAGACCAAGATGTAGCCGAGGCAAAGTCGGAGGAGAAGAGCCAGAGGAAACTGGAGGTGGGTGAGCTAGTATGGGGCGCCGCAAGAGGAAGTCCGGCGTGGCCGGGCAAGGTCGAGTCTTNGNGCCCACCGGGCACCATGACGGTGTGGGTCCGTTGGTACGGGGGCGGGGGCGGTCGGAGCCAGGTCGAGGTCAAGGCTCTCAAGTCCCTCTCCGAAGGCCTCGAGGCGCACCACCGTGCGCGAAAAAAGTTTAGGAAAAGTCGTAAATTGAACATGCAGCT]




>consensus_709#1
GAGTCGACGGTTACTACTGGGATCCAGATCTATACGTCAGAGACGTTGAAGCAAGCCGAA
GGTGTGGTGAGCACAGTGAGGTGCGAGGGCAGGGAACATGCCCTCGGCCGCGGAATCAAG
CGAAAGCTGGACTCCATCCATTCCATGCATTCTACCCTGCATGAAGACCAAGATGTAGCC
GAGGCAAAGTCGGAGGAGAAGAGCCAGAGGAAACTGGAGGTGGGTGAGCTAGTATGGGGC
GCCGCAAGAGGAAGTCCGGCGTGGCCGGGCAAGGTCGAGTCTTNGNGCCCACCGGGCACC
ATGACGGTGTGGGTCCGTTGGTACGGGGGCGGGGGCGGTCGGAGCCAGGTCGAGGTCAAG
GCTCTCAAGTCCCTCTCCGAAGGCCTCGAGGCGCACCACCGTGCGCGAAAAAAGTTTAGG
AAAAGTCGTAAATTGAACATGCAGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_709#0      CAAGGGAAACACCGTGTGTATATGTATATATGTATGCGCGTGTGTACGTGGTGTGTACGT 60
consensus_709#1      -----------------------GAGTCGACGGTTACTACTGGGATCCAGATCTATACGT 37
                                            *  *  * *  * *   ** *  *  * * * *****

consensus_709#0      GTCAGTCGAGAATTTTAAAAAACAAGAGTTGTGGTTAGGAAGTTTTTCGGTGTCGGTGTT 120
consensus_709#1      CAGAGACG----TTGAAGCAAGCCGAAGGTGTGGTGAGCA-------CAGTGA-GGTG-- 83
                        ** **    **  *  ** *   ** ****** ** *       * ***  ****  

consensus_709#0      TCTCAATCACAAAATTAACACGTTTGATTATGGTTCACAGATGGAACAGTGCGTTTCATC 180
consensus_709#1      ---CGAGGGCAGGGAACATGCCCTCGGCCGCGGA--ATCAAGCGAAAGCTGGACTCCATC 138
                        * *   **      *  *  * *     **   *   *  ***   **   * ****

consensus_709#0      ATCATCGTGATCTATCAAATTGACTGGTACGAGGATCCATCGACACGGATCACCGACACT 240
consensus_709#1      CATTCCATG------CATTCTACCCTGCATGAAGACCAA--GATGTAG----CCGAGGCA 186
                          * **      **   *  *  * * ** ** * *  **    *    ****  * 

consensus_709#0      GTTTCTGTTCAGCCGCGACAGGATTCACAGAACCGACAGACGCCTTCTTCGACGACGAC- 299
consensus_709#1      AAGTCGGAGGAGAAGAGCCAGAGGAAACTGGA--GGTGGGTGAGCTAGTATGGGGCGCCG 244
                        ** *   **  * * ***     ** * *  *   *  *   *  *    * ** * 

consensus_709#0      CTCTTCCCATCCTGCTTCGAGCCTGCGTTGCCGCACTCCTTGCTTCCGCTCGACACCTTG 359
consensus_709#1      CAAGAGGAAGTCCGGCGTGGCCGGGCAAGGTCG-AGTCTTNGNGCCCACCGGGCACCATG 303
                     *       *  * *    *  *  **   * ** * ** * *   ** *  * **** **

consensus_709#0      CACGACTTCCCGCCGACCTTCTGCTCCTTGCTCGACTCCGTCACCTTGTCCAGCTCGGCC 419
consensus_709#1      -ACGGT-----GTGGGTCCGTTGGTACGGGGGCGGGGGCG--GTCGGAGCCAGGTCGAG- 354
                      ***       *  *  *   ** * *  *  **    **    *    **** ***   

consensus_709#0      ATCGCCTCCTGTATAGCGTTCTCCAGCTGCATGTTCAATTTACGACTTCACCTAAACGGT 479
consensus_709#1      GTCAAGGCTCTCAAGTCCCTCTCCGAAGGCCT-CGAGGCGCACCACCGTGCGCGAAAAAA 413
                      **    *    *   *  *****    ** *         ** **    *   **    

consensus_709#0      CTTCGCGCAGGGTGGAATGCATGGAATGGATGGAGTCCAGCTTTCGCTTGATTCCGCGGC 539
consensus_709#1      GTTTAGGAAAAGTCG--TAAATTGAAC--ATGCAGCT----------------------- 446
                      **   * *  ** *  *  ** ***   *** **                         

consensus_709#0      CGAGGGCATGTTCCCTGCCCTCGCACCTCACTGTG 574
consensus_709#1      -----------------------------------

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)