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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_744#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence
[TTTATAATCCTTCATCTCGTATTTCTGTTTGGGAAAGACCAGATGATCTCATTGGTCGTCAAGATGTCGATAAAATGGTATCTACCCCACCAGATGCAGTAGTAACTACTAAACCAACACGTCAATCAGATACAAGTGAAAGCAGTGACGATGATCAACCAACACCGGCAAAAAAAAGTGAAACAAGAAGATACAAAAGCTGTAACACCAAAAGAAGAAGAAGAAAAAGAAAATAAAAAGACTATTGATATCGGGAAAGAAGCTGCAATAGAAGCTGAAGTACGAGCTGCTAGAGAAAGAGCAATTGTTCCTTTGGAAACAAGAATTAAATCATTTAGGGATATGCTTGCAGAAAAAGATGTATCCGCGTTTAGTACTTGGGAAAAGGAACTTCATAAAATTGTGTTTGATCCGCGATACTTACTTTTGACATCAAAGGAGAGGAAACAAGTTTTCGAGAAGTACGTCAAGGAGAGAGCAGAAGAAGAAAGGCGGGAAAAGAGGAACAAATTGAAAGAAAGAAAAGAACAATTTCAAAAATTATTAGAAGAAGCTGGACTTCATGGAAAATCTTCATTTAGTGATTTTGCTCAAAAACATGGGCGTGATGAACGGTTTAAGATGT]
[+] EMBL BI946489 [TTTATAATCCTTCATCTCGTATTTCTGTTTGGGAAAGACCAGATGATCTCATTGGTCGTCAAGATGTCGATAAAATGGTATCTACCCCACCAGATGCAGTAGTAACTACTAAACCAACACGTCAATCAGATACAAGTGAAAGCAGTGACGATGATCAACCAACACCGGCAAAAAAAAGTGAAACAAGAAGATACAAAAGCTGTAACACCAAAAGAAGAAGAAGAAAAAGAAAATAAAAAGACTATTGATATCGGGAAAGAAGCTGCAATAGAAGCTGAAGTACGAGCTGCTAGAGAAAGAGCAATTGTTCCTTTGGAAACAAGAATTAAATCATTTAGGGATATGCTTGCAGAAAAAGATGTATCCGCGTTTAGTACTTGGGAAAAGGAACTTCATAAAATTGTGTTTGATCCGCGATACTTACTTTTGACATCAAAGGAGAGGAAACAAGTTTTCGAGAAGTACGTCAAGGAGAGAGCAGAAGAAGAAAGGCGGGAAAAGAGGAACAAATTGAAAGAAAGAAAAGAACAATTTCAAAAATTATTAGAAGAAGCTGGACTTCATGGAAAATCTTCATTTAGTGATTTTGCTCAAAAACATGGGCGTGATGAACGGTTTAAGATGT]
consensusID : consensus_744#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence
[CGTATGTGGAGTGGCTTGGTTCTGAAGCTGGTTGGTGGCATGGATGATGTCATCTACCATCCCCACCTACACTGCGTGGCACAGTTGGCACACCCTCGCGCGCCGCATTCTTTACTCCAAAGCAGAGTCATGAGAATGAACGAACTCGGTGAAAAAGGAATTCATAGCGATGCTACGTGAACACAAAGACATCGACAGGCATTCGCATTGGAGCGATTGTAAGAAAAAATTGGAATCTGATTGGAGATACAGAGTCGTAGAATCGGCAAGCACGAGAGAAGATTGGTTTAGGGATTACATTCGTATGCTAAAGGAGGAGAGGAAAAGAGGAACAAAATGAAAGAAAGAAAAGAACAATTTCAAAAATTATTAGAAGAAGCTGGACTTCATGGAAAATCTTCATTTAGTGATTTTGCTCAAAAACATGGGCGTGATGAACGGTTTAAGAATGTAG]
[+] EMBL BI516417 [CGTATGTGGAGTGGCTTGGTTCTGAAGCTGGTTGGTGGCATGGATGATGTCATCTACCATCCCCACCTACACTGCGTGGCACAGTTGGCACACCCTCGCGCGCCGCATTCTTTACTCCAAAGCAGAGTCATGAGAATGAACGAACTCGGTGAAAAAGGAATTCATAGCGATGCTACGTGAACACAAAGACATCGACAGGCATTCGCATTGGAGCGATTGTAAGAAAAAATTGGAATCTGATTGGAGATACAGAGTCGTAGAATCGGCAAGCACGAGAGAAGATTGGTTTAGGGATTACATTCGTATGCTAAAGGAGGAGAGGAAAAGAGGAACAAAATGAAAGAAAGAAAAGAACAATTTCAAAAATTATTAGAAGAAGCTGGACTTCATGGAAAATCTTCATTTAGTGATTTTGCTCAAAAACATGGGCGTGATGAACGGTTTAAGAATGTAG]
consensusID : consensus_744#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 423 fasta sequence
[ATGTGACGGTTCCTTATATACTTATGTGTTCTGAACTCTCCACTTCAGTCAGGAGGCAGGCAGGACAGGTTCCGTATGTGGAGTGGCTTGGTTCTGAAGCTGGTTGGTGGCATGGATGATGTCATCTACCATCCCCACCTACACTGCGTGGCACAGTTGGCACACCCTCGCGCGCCGCATTCTTTACTCCAAAGCAGAGTCATGAGAATGAACGAACTCGGTATTTGTATATTACTCGTAATCCTCGTTACTTCAAAAGATTAACTTTTCCCCAAAAATCAAAACCAATTTCAAAAAAATTAAATTTATTATCAACAAAAGTGGGGTATCAATCCCTAATGGTAGCATCAATTCCAACAACATATTTGCAGATCTTGTTCTGTTTTCTGGAGATAAAGAACCGTTATTTTTCTTGAAAAAAAA]
[+] EMBL BI504396 [ATGTGACGGTTCCTTATATACTTATGTGTTCTGAACTCTCCACTTCAGTCAGGAGGCAGGCAGGACAGGTTCCGTATGTGGAGTGGCTTGGTTCTGAAGCTGGTTGGTGGCATGGATGATGTCATCTACCATCCCCACCTACACTGCGTGGCACAGTTGGCACACCCTCGCGCGCCGCATTCTTTACTCCAAAGCAGAGTCATGAGAATGAACGAACTCGGTATTTGTATATTACTCGTAATCCTCGTTACTTCAAAAGATTAACTTTTCCCCAAAAATCAAAACCAATTTCAAAAAAATTAAATTTATTATCAACAAAAGTGGGGTATCAATCCCTAATGGTAGCATCAATTCCAACAACATATTTGCAGATCTTGTTCTGTTTTCTGGAGATAAAGAACCGTTATTTTTCTTGAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_744#1 ------------------------------------------------------------
consensus_744#2 ------------------------------------------------------------
consensus_744#0 TTTATAATCCTTCATCTCGTATTTCTGTTTGGGAAAGACCAGATGATCTCATTGGTCGTC 60
consensus_744#1 ------------------------------------------------------------
consensus_744#2 ---------------------------------ATGTGACGGTTCCTTATATACTTATGT 27
consensus_744#0 AAGATGTCGATAAAATGGTATCTACCCCACCAGATGCAGTAGTAACTACTAAACCAACAC 120
consensus_744#1 ---------------------------------------------CGT-------ATGTG 8
consensus_744#2 GTTCTGAACTCTCCACTTCAGTCAGGAGGCAGGCAGGACAGGTTCCGT-------ATGTG 80
consensus_744#0 GTCAATCAGATACAAGTGAAAGCAGTGACGATGATCAACCAACACCGGCAAAAAAAAGTG 180
** * ***
consensus_744#1 GAGTGGCTTGGTTCTGAAGCTGGTTGGTGGCATGGATGATGTCATCTACCATCCCCACCT 68
consensus_744#2 GAGTGGCTTGGTTCTGAAGCTGGTTGGTGGCATGGATGATGTCATCTACCATCCCCACCT 140
consensus_744#0 AAACAAGAAGATACAAAAGCTGTAACACCAAAAGAAGAAGAAGAAAAAGAAAATAAAAAG 240
* * * * ****** * * * * * * * *
consensus_744#1 ACACTGCGTGGCACAGTTGGCACACCCTCGCGCGCCGCATTCTTTACT-CCAAAGCAGAG 127
consensus_744#2 ACACTGCGTGGCACAGTTGGCACACCCTCGCGCGCCGCATTCTTTACT-CCAAAGCAGAG 199
consensus_744#0 ACTATTGATATCGGGAAAGAAGCTGCAATAGAAGCTGAAGTACGAGCTGCTAGAGAAAGA 300
** * * * * * * ** * * * ** * * ** *
consensus_744#1 TCATGAGAATGAACGAACTCGGTGAAAAAGGAATTCATAGCGATGCTACGTGAACACAAA 187
consensus_744#2 TCATGAGAATGAACGAACTCGGT---------ATTTGTA-TATTACT-CGTAATCCTCGT 248
consensus_744#0 GCAATTGTTCCTTTGGAAACAAGAATTAAATCATTTAGGGATATGCT-TGCAGAAAAAGA 359
** * * * * *** * ** *
consensus_744#1 GACATCGACAGGCATTCGCATTGGAGCGATTGTAAGAAAAAATTGGAATCTGATTGGAGA 247
consensus_744#2 TACTTCAAAAG--ATTAACTTTTCCCC----------AAAAATCAAAACCAATTTCAAAA 296
consensus_744#0 TGTATCCGCGTTTAGT-ACTTGGGAAAAGGAACTTCATAAAATTGTG-TTTGATCCGCGA 417
** * * * * ***** * *
consensus_744#1 TACAGAGTCGTAGAATCGGCAAGCACGAGAGAAGATTGGTTTAGGGATTACATTCGTATG 307
consensus_744#2 AAATTAAATTTATTATCAACAAAAGTGGGGTATCAATC-CCTAATGGTAGCATCA--ATT 353
consensus_744#0 TACTTACTTTTGACATCAAAGGAGAGGAAACAAGTTTTCGAGAAGTACGTCAAGGAGAGA 477
* * * *** * * * * ** *
consensus_744#1 CTAAAGGAGGAGAGG----AAAAGAGGAACAAAATGAAAGAAAGAAAAGAACAATTTCAA 363
consensus_744#2 CCAACAACATATTTG----CAGATCTTGTTCTGTTTTCTGGAGATAAAGAACCGTT---A 406
consensus_744#0 GCAGAAGAAGAAAGGCGGGAAAAGAGGAACAAATTGAAAGAAAGAAAAGAACAATTTCAA 537
* * * * * * * * ******* ** *
consensus_744#1 AAATTATTAGAAGAAGCTGGACTTCATGGAAAATCTTCATTTAGTGATTTTGCTCAAAAA 423
consensus_744#2 TTTTTCTTGAAAAAAAA------------------------------------------- 423
consensus_744#0 AAATTATTAGAAGAAGCTGGACTTCATGGAAAATCTTCATTTAGTGATTTTGCTCAAAAA 597
** ** ** **
consensus_744#1 CATGGGCGTGATGAACGGTTTAAGAATGTAG 454
consensus_744#2 -------------------------------
consensus_744#0 CATGGGCGTGATGAACGGTTTAAGA-TGT-- 625
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |