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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_76#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 810 fasta sequence
[TTTTTTTTTTTTTTTTTTGATCGAATCGAATTCGAAGAGGAACATAAACGAAGAACGTGGCGTGAATACGAAAGAAATACCCTGTATCGATCGGGCATATCCCTGTTGTACATATCCGTGGTTCTTCAGTAGTTGTTATTTACATTAAATATCTCCCGCGTAATGTATTAACGACGTATAATAATAATAATAATAATGATAAGAATAATAATAATGATTAAACCAAAAAAAAAAAAAAAGGAAAAACTGCATGCATCTGCGTGCGTATATCTGTGGAAAATATGGATACACGGCATAATCGATGNNNNNATCGGATGATTTGATAACAATCGATGCTTTCGAAGTTTAAAAGAAACTGGCTAAATCGATATAAAGTGAATATAAAATACTTGCAACTGAGAGATTAAAGCTTTCGCTGTAAATCATTAAAGAAATCGGATCCAAACGATCCAAACGATTTTCTAATAAAGAATCTTACCTATTATACAGAGATTGTTATACAGAAATAGTAATCACGAGCTTCTTTTGCTTTCGTCTGTTGTAAAAATGCGCAGAAAAGTAAAGTTTGTAGTAAGATTATAAAGGAGAAAAAAATATACATATATATATATATATATATAATTATTAATACATTGACTAGGAAAAAGAAACTAACACGAAAGTCGTGCACGATGAAAGTTAAATTAAGGAATAATAAATGCTTAATTATATTCGTGATCGATAAGAAAATTCAGAGCGACAATTGTTATCGGATCAAACCGTACAAGAATATTTCTCAACAGCTCTGATTACGTGCTGCACTTTTGTACG]
[+] EMBL BI514750 [TTTTTTTTTTTTTTTTTTGATCGAATCGAATTCGAAGAGGAACATAAACGAAGAACGTGGCGTGAATACGAAAGAAATATCCTGTATCGATCGGGCATATCCCTGTTGTACATATCCGTGGTTCTTCAGTAGTTGTTATTTACATTAAATATCTCCCGCGTAATGTATTAACGACGTATAATAATAATAATAATAATGATAAGAATA ]
[+] EMBL BI510943 [ TCGAAGAGGAACATAAACGAAGAACGTGGCGTGAATACGAAAGAAATACCCTGTATCGATCGGGCATATCCCTGTTGTACATATCCGTGGTTCTTCAGTAGTTGTTATTTACATTAAATATCTCCCGCGTAATGTATTAACGACGTATAATAATAATAATAATAATGATAAGAATAATAATAATGATTAAACCAAAAAAAAAAAAAAAGGAAAAACTGCATGCATCTGCGTGCGTATATCTGTGGAAAATATGGATACACGGCATAATCGATGNNNNNATCGGATGATTTGATNNCAATCGATGCTTTCGAAGTTTAAAAGAAACTGGCTAAATCGATATAAAGTGAATATAAAATACTTGCAACTGAGAGATTAAAGCTTTCGCTGTAAATCATTAAAGAAATCGGATCCAAACGATCCAAACGATTTTCTAATAAAGAATCTTACCTATTATACAGAGATTGTTATACAGAAATAGTAATCACGAGCTTCTTTTGCTTTCGTCTGTTGTAAAAATGC ]
[+] EMBL BI512517 [ ATATCCCTGTTGTACATATCCGTGGTTCTTCAGTAGTTGTTATTTACATTAAATATCTCCCGCGTAATGTATTAACGACGTATAATAATAATAATAATAATGATAAGAATAATAATAATGATTAAACCAAAAAAAAAAAAAAAGGAAAAACTGCATGCATCTGCGTGCGTATATCTGTGGAAAATATGGATACACGGCATAATCGATGAGGTGATCGGATGATTTGATAACAATCGATGCTTTCGAAGTTTAAAAGAAACTGGCTAAATCGATATAAAGTGAATATAAAATACTTGCAACTGAGAGATTAAAGCTTTCGCTGTAAATCATTAAAGAAATCGGATCCAAACGATCCAAACGATTTTCTAATAAAGAATCTTACCTATTATACAGAGATTGTTATACAGAAATAGTAATCACGAGCTT ]
[+] EMBL BI514835 [ ATTTGATAACAATCGATGCTTTCGAAGTTTAAAAGAAACTGGCTAAATCGATATAAAGTGAATATAAAATACTTGCAACTGAGAGATTAAAGCTTTCGCTGTAAATCATTAAAGAAATCGGATCCAAACGATCCAAACGATTTTCTAATAAAGAATCTTACCTATTATACAGAGATTGTTATACAGAAATAGTAATCACGAGCTTCTTTTGCTTTCGTCTGTTGTAAAAATGCGCAGAAAAGTAAAGTTTGTAGTAAGATTATAAAGGAGAAAAAAATATACATATATATATATATATATATAATTATTAATACATTGACTAGGAAAAAGAAACTAACACGAAAGTCGTGCACGATGAAAGTTAAATTAAGGAATAATAAATGCTTAATTATATTCGTGATCGATAAGAAAATTCAGAGCGACAATTGTTATCGGATCAAACCGTACAAGAATATTTCTCAACAGCTCTGATTACGTGCTGCACTTTTGTACG]
consensusID : consensus_76#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 618 fasta sequence
[GCTCTGATTACGTGCTGCACTTTTGTACGGAATGCGATTCGAAGCCAAAGAAAATTTAAGGAGAAAAATAAGAGACAGAGATAAGAATTAATTAAGAGAAAGAATTTAAAAAAGTAAAAATAAAAAAGTTAATAGGAAGAAAAAGAAACGGTTTACAATGATGTTTCTGCCGCGTGACCAGGCTGGTCCGGCCACGGCTGTTAATCTCTAATATATATATATATATACATTATATATATATATTTCATACGAGATGTCTTTTCAAGTGTGAATTTTATGATATATATATGTATATATATATATATATATATATATACATATATTTGCATATATGTATTAATTAACATACATACGTATATACACATTATAGAATGTGGGTCGTTTTCACTGCATTCTCATCGACGGCTTTTTGGTGCATTGTTAGTAAATTAGGTCATTGCGACTGCTGATATTGATCGCGTGTACAAGACATTAAATAATTAATTGATTTGTTAAATCTTCGCCGAACAGTAGTAACGTAACCAGCTGGAAGAAGTGACTNCGAAATAGAATTAAATCGTTCCTGCTAAAGATACCCTTTTATTTATTACAATAATACCTTTCTTTCGATTCGGATTG]
[+] EMBL BI513095 [GCTCTGATTACGTGCTGCACTTTTGTACGGAATGCGATTCGAAGCCAAAGAAAATTTAAGGAGAAAAATAAGAGACAGAGATAAGAATTAATTAAGAGAAAGAATTTAAAAAAGTAAAAATAAAAAAGTTAATAGGAAGAAAAAGAAACGGTTTACAATGATGTTTCTGCCGCGTGACCAGGCTGGTCCGGCCACGGCTGTTAATCTCTAATATATATATATATATACATTATATATATATATTTCATACGAGATGTCTTTTCAAGTGTGAATTTTATGATATATATATG TATATATATATATATATACATATATTTGCATATATGTATTAATTAACATACATACGTATATACACATTATAGAATGTGGGTCGTTTTCACTGCATTCTCATCGACGGCTTTTTGGTGCATTGTTAGTAAATTAGGTCATTGCGACTGCTGATATTGATCGCGTGTACAAGACATTAAATAATTAATTGATTTGTTAAATCTTCGCCGAACAGTAGTAACGTAACCAGCTGGAAGAAGTGACTTCGAAATAGAATTAAATCGTTCCTGCTAAAGATACCCTTTTATTTATTACAATAA ]
[+] EMBL BI509174 [ CCGGCCACGGCTGTTAATCTCTAATATATATATATATATACATTATATATATATATTTCATACGAGATGTCTTTTCAAGTGTGAATTTTATGATATATATATGTATATATATATATATATATATATATATATATATTTGCATATATGTATTAATTAACATACATACGTATATACACATTATAGAATGTGGGTCGTTTTCACTGCATTCTCATCGACGGCTTTTTGGTGCATTGTTAGTAAATTAGGTCATTGCGACTGCTGATATTGATCGCGTGTACAAGACATTAAATAATTAATTGATTTGTTAAATCTTCGCCGAACAGTAGTAACGTAACCAGCTGGAAGAAGTGACTNCGAAATAGAATTAAATCGTTCCTGCTAAAGATACCCTTTTATTTATTACAATAATACCTTTCTTTCGATTCGGATTG]
consensusID : consensus_76#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 342 fasta sequence
[CATGTATTCTTTACGTTTATTCAATGAAAGCATAATTCGTCATCGTTTTGGATTTGCTCAATTTGGCACATAATTGCAATACGATATTAAAATACATATAAACGAAGATTGTACATATTAACAGTTTAAAATGTATCATATACATATTAACAGCGAGATACACGATGAAATGAAATATGCGAAATGAATGATCGAGCAACGATCATAAATTACGATCGTTACTTTAGAAAAAAGAATAATATAGAATTGGATCGCAATTATCCACGGGGTCGATCAATTATAACACGATATCGATGAACTGGATCAACGCTCAATCCGAATCGAAAGAAAGGTATTATTGTA]
[+] EMBL BI514500 [CATGTATTCTTTACGTTTATTCAATGAAAGCATAATTCGTCATCGTTTTGAATTTGCTCAATTTGGCACATAATTGCAATACGATATTAAAATACATATAAACGAAGATTGTACATATTAACAGTTTAAAATGTATCATATACATATTAACAGCGAGATACACGATGAAATGAAATATGCGAAATGAATTATTAAGCAACG CATAAATTATGATCGTTACTTTAAAAAAAAGAATAATATACAATTGGATCGCAATTATCCACGGGGTCGATCAATTATAACACGATATCGATGAACTGGATCAACGCTCAATCCGAATCGAAAGAAAGGTATTATTGTA]
[-] EMBL AB072428 [ TGTATTCTTTACGTTTATTCAATGAAAGCATAATTCGTCATCGTTTTGGATTTGCTCAATTTGGCACATAATTGCAATACGATATTAAAATATATATAAACGAAGATTGTACATATTAACAGTTTAAAATGTATCATATACATATTAACAGCGAGATACACGATGAAATGAAATATGCGAAATAAATGATCGAGTAACGATCATAAATTACGATCGTTACTTT GAAAAAAGAATAATATAG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_76#0 TTTTTTTTTTTTTTTTTTGATCGAATCGAATTCGAAGAGGAACATAAACGAAGAACGTGG 60
consensus_76#2 ------------------------------------------CATGTATTCTTTACGTTT 18
consensus_76#1 ---------------------------------------------GCTCTGATTACGTGC 15
****
consensus_76#0 CGTGAATACGAAAGAAATACCCTGTATCGATCGGGCATATCCCTGTT--GTACATATCCG 118
consensus_76#2 ATTCAAT--GAAAGCATAATTCGTCATCGTTTTGGATTTGCTCAATTTGGCACATAATTG 76
consensus_76#1 TGCACTTTTGTACGGAATGCGATTCGAAGCCAAAGAAAATTTAA-----GGAGAAAAATA 70
* * * * * * * * * * *
consensus_76#0 TGGTTCTTCAGTAGTTGTTATTTACATTAAATATCTCCCGCGTAATGTATTAACGACGTA 178
consensus_76#2 CAATACGATATTAAAATACATATAAAC-GAAGATTGTACATATTAACAGTTTAAAATGTA 135
consensus_76#1 AGAGACAGAGATAAGAATTAATTAAGAGAAAGAATTTAAAAAAGTAAAAATAAAAAAGT- 129
* ** * ** ** * * * * **
consensus_76#0 TAATAATAATAATAATAATGATAAGAATAATAATAATGATTA-AACCAAAAAAAAAAAAA 237
consensus_76#2 TCATATACATATTAACAGCGAGATACACGATGA-AATGAAAT-ATGCGAAATGAATGATC 193
consensus_76#1 TAATAGGAAGAAAAAGAA-ACGGTTTACAATGATGTTTCTGCCGCGTGACCAGGCTGGTC 188
* *** * * ** * * ** * * *
consensus_76#0 AAGGAAAAACTGCATGCATCTGCGTGCGTATATCTGTGGAAAATATGGATACACGGCATA 297
consensus_76#2 GAGCAACGATCATA---AATTACGATCGTTACTTTAGAAAAAAGAATAATATAGAATTGG 250
consensus_76#1 CGGCCACGGCTGTTAATCTCTA-ATATATATATATATATACATTATATATATATATTTCA 247
* * * * * * * * * *** *
consensus_76#0 ATCG-ATG---NNNNNATCGGATGATTTGATAACAAT-CGATGCTTTCGAAG-TTTAAAA 351
consensus_76#2 ATCGCAAT---TATCCACGGGGTCGATCAATTATAACACGATATCGATGAAC-TGGATCA 306
consensus_76#1 TACGAGATGTCTTTTCAAGTGTGAATTTTATGATATATATATGTATATATATATATATAT 307
** * * * ** * * ** * * *
consensus_76#0 GAAACTG-G-CTAAATCGATATAAAGTGAATATAAAATACTTGCAACTG-AGAGATTAAA 408
consensus_76#2 ACGCTCA-ATCCGAATCGAAAGAAAGGTATTATTGTA----------------------- 342
consensus_76#1 ATATATATACATATATTTGCATATATGTATTAATTAACATACATACGTATATACACATTA 367
** * * * * ** *
consensus_76#0 GCTTTCGCTGTAAATCATTAAAGAAATCGGATCCAAACGATCCAAACGATTTTCTAATAA 468
consensus_76#2 ------------------------------------------------------------
consensus_76#1 TAGAATGTGGGTCGTTTTCACTGCATTCTCATCGACGGCTTTTTGGTGCATTGTTAGTAA 427
consensus_76#0 AGAATCTTACCTATTATACAGAGATTGTTATACAGAAATAGTAATCACGAGCTTCTTTTG 528
consensus_76#2 ------------------------------------------------------------
consensus_76#1 ATTAGGTCATTGCGACTGCTGATATTGATCGCGTGTACAAGACATTAAATAATTAATTGA 487
consensus_76#0 CTTTCGTCTGTTGTAAAAATGCGCAGAAAAGTAAAGTTTGTAGTAAGATTATAAAGGAGA 588
consensus_76#2 ------------------------------------------------------------
consensus_76#1 TTTGTTAAATCTTCGCCGAACAGTAGTAACGTAACCAGCTGGAAGAAGTGACTNCGAAAT 547
consensus_76#0 AAAAAATATACATATATATATATATATATATAATTATTAATACATTGACTAGGAAAAAGA 648
consensus_76#2 ------------------------------------------------------------
consensus_76#1 AGAATTAAATCGTTCCTGCTAAAGATACCCTTTTATTTATTACAATAATACCTTTCTTTC 607
consensus_76#0 AACTAACACGAAAGTCGTGCACGATGAAAGTTAAATTAAGGAATAATAAATGCTTAATTA 708
consensus_76#2 ------------------------------------------------------------
consensus_76#1 GATTCGGATTG------------------------------------------------- 618
consensus_76#0 TATTCGTGATCGATAAGAAAATTCAGAGCGACAATTGTTATCGGATCAAACCGTACAAGA 768
consensus_76#2 ------------------------------------------------------------
consensus_76#1 ------------------------------------------------------------
consensus_76#0 ATATTTCTCAACAGCTCTGATTACGTGCTGCACTTTTGTACG 810
consensus_76#2 ------------------------------------------
consensus_76#1 ------------------------------------------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |