cluster # 788

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Apis mellifera
cluster # 788 cluster # 788 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_788#0 length = 506 sequences # 2

consensus_788#1 length = 487 sequences # 1

consensusID : consensus_788#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 506
fasta sequence

                              [AAGCACCTCGAGCACCTACTCCAGCAACTCCTGCTGCTTCGCTTGCTGAAATTCAAAGACTTGAACGAGAAAAAAAAGCGGAAGAACAACGATTTCAACAAATAATGCAGCAACAATTAGCACAGCAGAAAGCCATAGAAGCAGCGCAAGAAGCATCGGTAACTGATTCTTCTAAAAGATTACAATTTAAGTGGGCAGAAAAAAGTACGAGTTCTACTAAATCTATACCAGTAAAAAGTCTCGCTCAAATTCAACAAGAAGAGCAGGAACGGATCGCCAAGGTAAAGCAACAAGAAAGGGAACGTCAAGAAAAGGCAGGACAAAAAGAATCAACGAACGTACTGCAAAATGCTGGAATATNNNGGTACTGCATCTCAATGTTTGAATTGGGCTAATTCGAGTAGCTCTAATAATAGTCAACCTTGGTCGAACAATAGTGGTAGTAGTGGTTTTTGGGATGATCCTACGCCAATCAAATCTTCTACAACCGCGAAATCTATTAAACA]

[+] EMBL BI505171             [AAGCACCTCGAGCACCTACTCCAGCAACTCCTGCTGCTTCGCTTGCTGAAATTCAAAGACTTGAACGAGAAAAAAAAGCGGAAGAACAACGATTTCAACAAATAATGCAGCAACAATTAGCACAGCAGAAAGCCATAGAAGCAGCGCAAGAAGCATCGGTAACTGATTCTTCTAAAAGATTACAATTTAAGTGGGCAGAAAAAAGTACGAGTTCTACTAAATCTATACCAGTAAAAAGTCTCGCTCAAATTCAACAAGAAGAGCAGGAACGGATCGCCAAGGTAAAGCAACAAGAAAGGGAACGTCAAGAAAAGGCAGGACAAAAAGAATCAACGAACGTACTGCAAAATGCTGGAATAT GGGGTACTGCATCTCAATGTTTGAATTGGGCTAATTCGAGTAGCTCTAATAATAGTCAACCTTGGTCGAACAATAGTGGTAGTAGTGGTTTTTGGGATGATCCTACGCCAATCAAATCTTCTACAACCGCGAAATCTATTAAACA]
[+] EMBL BI503967             [AAGCACCTCGAGCACCTACTCCAGCAACTCCTGCTGCTTCGCTTGCTGAAATTCAAAGACTTGAACGAGAAAAAAAAGCGGAAGAACAACGATTTCAACAAATAATGCAGCAACAATTAGCACTGCAGAAAGCCATAGAAGCAGCGCAAGAAGCATCGGTAACTGATTCTTCTAAAAGATTACAATTTAAGTGGGCAGAAAAAAGTACGAGTTCTACTAAATCTATACCAGTAAAAAGTCTCGCTCAAATTCAACAAGAAGAGCAGGAACGGATCGCCAAGGTAAAGCAACAAGAAAGGGAACGTCAAGAAAAGGCAGGACAAAAAGAATCAACGAACGTACTGCAAAATGCTGGAATATNNNGGTACTGCATCTCAATGTTTGAATTGGGCTAATTCGAGTAGCTCTAATAATAGTCAACCTTGGTCGAACAATAGTGGTAGTAGTGGTTTTTGGGATGATCCTACGCCAATC                                ]




>consensus_788#0
AAGCACCTCGAGCACCTACTCCAGCAACTCCTGCTGCTTCGCTTGCTGAAATTCAAAGAC
TTGAACGAGAAAAAAAAGCGGAAGAACAACGATTTCAACAAATAATGCAGCAACAATTAG
CACAGCAGAAAGCCATAGAAGCAGCGCAAGAAGCATCGGTAACTGATTCTTCTAAAAGAT
TACAATTTAAGTGGGCAGAAAAAAGTACGAGTTCTACTAAATCTATACCAGTAAAAAGTC
TCGCTCAAATTCAACAAGAAGAGCAGGAACGGATCGCCAAGGTAAAGCAACAAGAAAGGG
AACGTCAAGAAAAGGCAGGACAAAAAGAATCAACGAACGTACTGCAAAATGCTGGAATAT
NNNGGTACTGCATCTCAATGTTTGAATTGGGCTAATTCGAGTAGCTCTAATAATAGTCAA
CCTTGGTCGAACAATAGTGGTAGTAGTGGTTTTTGGGATGATCCTACGCCAATCAAATCT
TCTACAACCGCGAAATCTATTAAACA

consensusID : consensus_788#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 487
fasta sequence

                              [TTCGCAGATTACAAGAACGAAGTAAAGCACCATGGGCGCAAGCACCTCGAGCACCTACTCCAGCAACTCCTGCTGCTTCGCTTGCTGAAATTCAAAGACTTGAACGAGAAAAAAAAGCGGAAGAACAACGATTTCAACAAATAATGCAGCAACAATTAGCACAGCAGAAAGCCATAGAAGCAGCGCAAGAAGCATCGGTAACTGATTCTTCTAAAAGATTACAATTTAAGTGCAGAAAAAAGTACGAGTTCTACTAAATCTATACCAGTAAAAAGTCTCGCTCAAATTCAACAAGAAGAGCAGGAACGGATCGCCAAGGTAAAGGTACTTATTACTTTGTCAATATTTTATTATCATATGTTAATTTTGATATTTCTTATTATTTCGAGATCTTTTTATTTTTGAAATTTTATATATTCATATAATAGCGGAACAGAAAGAATTGTAATTGTTAAAAGATAATTATATATTGCTAATTGTTATTGCT]

[+] EMBL BI510306             [TTCGCAGATTACAAGAACGAAGTAAAGCACCATGGGCGCAAGCACCTCGAGCACCTACTCCAGCAACTCCTGCTGCTTCGCTTGCTGAAATTCAAAGACTTGAACGAGAAAAAAAAGCGGAAGAACAACGATTTCAACAAATAATGCAGCAACAATTAGCACAGCAGAAAGCCATAGAAGCAGCGCAAGAAGCATCGGTAACTGATTCTTCTAAAAGATTACAATTTAAGTGCAGAAAAAAGTACGAGTTCTACTAAATCTATACCAGTAAAAAGTCTCGCTCAAATTCAACAAGAAGAGCAGGAACGGATCGCCAAGGTAAAGGTACTTATTACTTTGTCAATATTTTATTATCATATGTTAATTTTGATATTTCTTATTATTTCGAGATCTTTTTATTTTTGAAATTTTATATATTCATATAATAGCGGAACAGAAAGAATTGTAATTGTTAAAAGATAATTATATATTGCTAATTGTTATTGCT]




>consensus_788#1
TTCGCAGATTACAAGAACGAAGTAAAGCACCATGGGCGCAAGCACCTCGAGCACCTACTC
CAGCAACTCCTGCTGCTTCGCTTGCTGAAATTCAAAGACTTGAACGAGAAAAAAAAGCGG
AAGAACAACGATTTCAACAAATAATGCAGCAACAATTAGCACAGCAGAAAGCCATAGAAG
CAGCGCAAGAAGCATCGGTAACTGATTCTTCTAAAAGATTACAATTTAAGTGCAGAAAAA
AGTACGAGTTCTACTAAATCTATACCAGTAAAAAGTCTCGCTCAAATTCAACAAGAAGAG
CAGGAACGGATCGCCAAGGTAAAGGTACTTATTACTTTGTCAATATTTTATTATCATATG
TTAATTTTGATATTTCTTATTATTTCGAGATCTTTTTATTTTTGAAATTTTATATATTCA
TATAATAGCGGAACAGAAAGAATTGTAATTGTTAAAAGATAATTATATATTGCTAATTGT
TATTGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_788#0      ---------------------------------------AAGCACCTCGAGCACCTACTC 21
consensus_788#1      TTCGCAGATTACAAGAACGAAGTAAAGCACCATGGGCGCAAGCACCTCGAGCACCTACTC 60
                                                            *********************

consensus_788#0      CAGCAACTCCTGCTGCTTCGCTTGCTGAAATTCAAAGACTTGAACGAGAAAAAAAAGCGG 81
consensus_788#1      CAGCAACTCCTGCTGCTTCGCTTGCTGAAATTCAAAGACTTGAACGAGAAAAAAAAGCGG 120
                     ************************************************************

consensus_788#0      AAGAACAACGATTTCAACAAATAATGCAGCAACAATTAGCACAGCAGAAAGCCATAGAAG 141
consensus_788#1      AAGAACAACGATTTCAACAAATAATGCAGCAACAATTAGCACAGCAGAAAGCCATAGAAG 180
                     ************************************************************

consensus_788#0      CAGCGCAAGAAGCATCGGTAACTGATTCTTCTAAAAGATTACAATTTAAGTGGGCAGAAA 201
consensus_788#1      CAGCGCAAGAAGCATCGGTAACTGATTCTTCTAAAAGATTACAATTTAAGTG--CAGAAA 238
                     ****************************************************  ******

consensus_788#0      AAAGTACGAGTTCTACTAAATCTATACCAGTAAAAAGTCTCGCTCAAATTCAACAAGAAG 261
consensus_788#1      AAAGTACGAGTTCTACTAAATCTATACCAGTAAAAAGTCTCGCTCAAATTCAACAAGAAG 298
                     ************************************************************

consensus_788#0      AGCAGGAACGGATCGCCAAGGTAAAGCAACAAGAAAGGGAACGTCAAGAAAAGGCAGGAC 321
consensus_788#1      AGCAGGAACGGATCGCCAAGGTAAAGGTACTTATTACTT--TGTCAATATTTTAT----T 352
                     **************************  **     *      ***** *           

consensus_788#0      AAAAAGAATCAACGAACGTACTGCAAAATGCTGGAATATNNNGGTACTGCATCTCAATGT 381
consensus_788#1      ATCATATGTTAATTTTGATATTTCTTATTATTTCGAGATCTTTTTATTTT-TGAAATTTT 411
                     *  *    * **      ** * *  * *  *   * **     ** *   *   * * *

consensus_788#0      TTGAATTGGGCTAATTCGAGTAGCTCTAATAATAGTCAACCTTGGTCGAACAATAGTGGT 441
consensus_788#1      ATATATTCATATAATA-GCGGAACAGAAAGAATTGTAA----TTGTTAAAAGATAATTAT 466
                      *  ***    ****  * * * *   ** *** ** *    * **  **  *** *  *

consensus_788#0      AGTAGTGGTTTTTGGGATGATCCTACGCCAATCAAATCTTCTACAACCGCGAAATCTATT 501
consensus_788#1      A-TATTGCTAATTGTTATTGCT-------------------------------------- 487
                     * ** ** *  ***  **                                          

consensus_788#0      AAACA 506
consensus_788#1      -----

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)