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Apis mellifera
cluster # 795 cluster # 795       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_795#0 length = 507 sequences # 1  
 consensus_795#1 length = 398 sequences # 2  
consensusID : consensus_795#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 507
fasta sequence 
                              [TTGTAAAGCTAGTTGAGTGAATATGTTTGACATCTGAGAGCAAACGAAAAGAGATGTGAAAAAATGTCGGATAAAAGTGAAACTCGGTGATCTAAACTGGACAAATATACAACAGTGAAGGAAAGAAAATTCGGTAGATTATTAACATTGCTTTTTGGAAGGTCACGATCATCAATAACCACTGCGTCAGTAGATAGTTAATTGAAAGAGGGGAACCTGTAAAGCTTGATCTCATACAGGTCAACACGTACGCACGATACAAAAGAAAAGGAGAACACGTACGGTGAAATAACTTGAAGAGATCGCACGTATGCTACAATTCTTTGAAAAAACTTACGAATGGGGCACGGGTGCGTCTACGAGATGAAATTTTACGCACGAATGGAATACCTTTGTTATTGTTGTGCATATTGATTTTTAACGCGCGAACCATAATTTCGATATTTATTTTATGTTACAGAAAGATGTTTATTATTTTTTTTATTTGTGACTGTGATTAAAAAAAAA]

[+] EMBL BI506414             [TTGTAAAGCTAGTTGAGTGAATATGTTTGACATCTGAGAGCAAACGAAAAGAGATGTGAAAAAATGTCGGATAAAAGTGAAACTCGGTGATCTAAACTGGACAAATATACAACAGTGAAGGAAAGAAAATTCGGTAGATTATTAACATTGCTTTTTGGAAGGTCACGATCATCAATAACCACTGCGTCAGTAGATAGTTAATTGAAAGAGGGGAACCTGTAAAGCTTGATCTCATACAGGTCAACACGTACGCACGATACAAAAGAAAAGGAGAACACGTACGGTGAAATAACTTGAAGAGATCGCACGTATGCTACAATTCTTTGAAAAAACTTACGAATGGGGCACGGGTGCGTCTACGAGATGAAATTTTACGCACGAATGGAATACCTTTGTTATTGTTGTGCATATTGATTTTTAACGCGCGAACCATAATTTCGATATTTATTTTATGTTACAGAAAGATGTTTATTATTTTTTTTATTTGTGACTGTGATTAAAAAAAAA]




>consensus_795#0
TTGTAAAGCTAGTTGAGTGAATATGTTTGACATCTGAGAGCAAACGAAAAGAGATGTGAA
AAAATGTCGGATAAAAGTGAAACTCGGTGATCTAAACTGGACAAATATACAACAGTGAAG
GAAAGAAAATTCGGTAGATTATTAACATTGCTTTTTGGAAGGTCACGATCATCAATAACC
ACTGCGTCAGTAGATAGTTAATTGAAAGAGGGGAACCTGTAAAGCTTGATCTCATACAGG
TCAACACGTACGCACGATACAAAAGAAAAGGAGAACACGTACGGTGAAATAACTTGAAGA
GATCGCACGTATGCTACAATTCTTTGAAAAAACTTACGAATGGGGCACGGGTGCGTCTAC
GAGATGAAATTTTACGCACGAATGGAATACCTTTGTTATTGTTGTGCATATTGATTTTTA
ACGCGCGAACCATAATTTCGATATTTATTTTATGTTACAGAAAGATGTTTATTATTTTTT
TTATTTGTGACTGTGATTAAAAAAAAA

consensusID : consensus_795#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 398
fasta sequence 
                              [GCATATTTTGTAAAGCTAGTTGAGTGAATATGTTTGACATCTGAGAGCAAACGAAAAGAGATGTGAAAAAATGTCGGATAAAAGTGAAACTCGGTGATCTAAACTGGACAAATATACAACAGTGAAGGAAAGAAAATTCGGTAGATTATTAACATTGCTTTTTGGAAGGTCACGATCATCAATAACCACTGCGTCAGTAGATAGTTAATTGAAAGAGGGGAACCTGTAAAGCTTGATCTCATACAGGTCAACACGTACGCACGATACAAAAGAAAAGGAGAACACGTACGGTGAAATAACTTGAAGAGATCGCACGTATGCTACAATTCTTTGAAAAAACTTACGAATGGGGCACGGAAAGATGTTTATTATTTTTTTTATTTGTGACTGTGATTAAA]

[+] EMBL BI507975             [GCATATTTTGTAAAGCTAGTTGAGTGAATATGTTTGACATCTGAGAGCAAACGAAAAGAGATGTGAAAAAATGTCGGATAAAAGTGAAACTCGGTGATCTAAACTGGACAAATATACAACAGTGAAGGAAAGAAAATTCGGTAGATTATTAACATTGCTTTTTGGAAGGTCACGATCATCAATAACCACTGCGTCAGTAGATAGTTAATTGAAAGAGGGGAACCTGTAAAGCTTGATCTCATACAGGTCAACACGTACGCACGATACAAAAGAAAAGGAGAACACGTACGGTGAAATAACTTGAAGAGATCGCACGTATGCTACAATTCTTTGAAAAAACTTACGAATGGGGCACGGAAAGATGTTTATTATTTTTTTTATTTGTGACTGTGATTAAA]
[+] EMBL BI505304             [GCATATTTTGTAAAGCTAGTTGAGTGAATATGTTTGACATCTGAGAGCAAACGAAAAGATATGTGAAAAAATGTCGGATAAAAGTGAAACTCGGTGATCTAAACTGGACAAATATACAACAGTGAAGGAAAGAAAATTCGGTAGATTATTAACATTGCTTTTTGGAAGGTCACGATCATCAATAACCACTGCGTCAGTAGATAGTTAATTGAAAGAGGGGAACCTGTAAAGCTTGATCTCATACAGGTCAACACGTACGCACGATACAAAAGAAAAGGAGAACACGTACGGTGAAATAACTTGAAGAGATCGCACGTATGCTACAATTCTTTGAAAAAACTTACGAATGGGGCACGGAAAGATGTTTATTATTTTTTTTATTTGTGACTGTGATTAAA]




>consensus_795#1
GCATATTTTGTAAAGCTAGTTGAGTGAATATGTTTGACATCTGAGAGCAAACGAAAAGAG
ATGTGAAAAAATGTCGGATAAAAGTGAAACTCGGTGATCTAAACTGGACAAATATACAAC
AGTGAAGGAAAGAAAATTCGGTAGATTATTAACATTGCTTTTTGGAAGGTCACGATCATC
AATAACCACTGCGTCAGTAGATAGTTAATTGAAAGAGGGGAACCTGTAAAGCTTGATCTC
ATACAGGTCAACACGTACGCACGATACAAAAGAAAAGGAGAACACGTACGGTGAAATAAC
TTGAAGAGATCGCACGTATGCTACAATTCTTTGAAAAAACTTACGAATGGGGCACGGAAA
GATGTTTATTATTTTTTTTATTTGTGACTGTGATTAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_795#0      -------TTGTAAAGCTAGTTGAGTGAATATGTTTGACATCTGAGAGCAAACGAAAAGAG 53
consensus_795#1      GCATATTTTGTAAAGCTAGTTGAGTGAATATGTTTGACATCTGAGAGCAAACGAAAAGAG 60
                            *****************************************************

consensus_795#0      ATGTGAAAAAATGTCGGATAAAAGTGAAACTCGGTGATCTAAACTGGACAAATATACAAC 113
consensus_795#1      ATGTGAAAAAATGTCGGATAAAAGTGAAACTCGGTGATCTAAACTGGACAAATATACAAC 120
                     ************************************************************

consensus_795#0      AGTGAAGGAAAGAAAATTCGGTAGATTATTAACATTGCTTTTTGGAAGGTCACGATCATC 173
consensus_795#1      AGTGAAGGAAAGAAAATTCGGTAGATTATTAACATTGCTTTTTGGAAGGTCACGATCATC 180
                     ************************************************************

consensus_795#0      AATAACCACTGCGTCAGTAGATAGTTAATTGAAAGAGGGGAACCTGTAAAGCTTGATCTC 233
consensus_795#1      AATAACCACTGCGTCAGTAGATAGTTAATTGAAAGAGGGGAACCTGTAAAGCTTGATCTC 240
                     ************************************************************

consensus_795#0      ATACAGGTCAACACGTACGCACGATACAAAAGAAAAGGAGAACACGTACGGTGAAATAAC 293
consensus_795#1      ATACAGGTCAACACGTACGCACGATACAAAAGAAAAGGAGAACACGTACGGTGAAATAAC 300
                     ************************************************************

consensus_795#0      TTGAAGAGATCGCACGTATGCTACAATTCTTTGAAAAAACTTACGAATGGGGCACGGGTG 353
consensus_795#1      TTGAAGAGATCGCACGTATGCTACAATTCTTTGAAAAAACTTACGAATGGGGCACGGAAA 360
                     *********************************************************   

consensus_795#0      CGTCTACGAGATGAAATTTTACGCACGAATGGAATACCTTTGTTATTGTTGTGCATATTG 413
consensus_795#1      GATGTTTATTATTTT-TTTTATTTGTGACTGTGATTAAA--------------------- 398
                       * *     **    *****     ** **  **                         

consensus_795#0      ATTTTTAACGCGCGAACCATAATTTCGATATTTATTTTATGTTACAGAAAGATGTTTATT 473
consensus_795#1      ------------------------------------------------------------
                                                                                 

consensus_795#0      ATTTTTTTTATTTGTGACTGTGATTAAAAAAAAA 507
consensus_795#1      ----------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)