|
These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_811#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 750 fasta sequence
[ATGTCGTCCAACTAAATTATTTTGTTGAGAAAAAAAAAAAAAAAAAAAAAGAAAAATAAAAATGAAATTCTCATTAAATCGATCTTAACTTCGTTCTGCTGTACTATCTGTGTGTTTCGTCGTCGTTCGTGCATCGTTGTTTGCCATCGATTAATTTTTCGATTCATTGGTAATAAAACCGTAGTTAATCACGAAAATACTGGAAGTTCTGTTCTTTTGGAGGAAATGGAAAAAAAAAAAAGAAAAAGGCTCTCCCCTATTTCGTACAACAACCCGGTGAAATTATAGAAATTCTTCCAGAAGACAAGACCAATTGTAACAAACTTCGTTCGAACAAACACAGGCCTCGTTCGTCTGTCCGATCTAACCTTTTGTCTACTTTTCTTTCTCCAGACAGAATTTTTTAATGTAGCACTCTTGTACAAAAAGAAAAACGATTCTTTCGGAATCGGAGCGTGACAGGATCGCACGCGTACACAGTGTTTGAAGGCTCGCGTGAAAAAGCAGAACGAATTTCTTTCTTTCTTTCTCCCTCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTTTCGNNNTTTCTCTCTTTCTCTCTCTTTCTTTCTCGTCTATCGACCGACCGTTTGTGCACCTCAATTTCGCTCGCGAGGCATGTACGATACTCGCAAGTTCCATAGAAGCGAGCATAATGCGTACGATTTAAGTCACGACTCCGCAAGTACATGCATGTCAGTATTTTACAT]
[+] EMBL BI507261 [ATGTCGTCCAACTAAATTATTTTGTTGAGAAAAAAAAAAAAAAAAAAAAAGAAAAATAAAAATGAAATTCTCATTAAATCGATCTTAACTTCGTTCTGCTGTACTATCTGTGTGTTTCGTCGTCGTTCGTGCATCGTTGTTTGCCATCGATTAATTTTTCGATTCATTGGTAATAAAACCGTAGTTAATCACGAAAATACTGGAAGTTCTGTTCTTTTGGAGGAAATGAAAAAAAAA ]
[+] EMBL BI504785 [ GTTTGCCATCGATTAATTTTTCGATTCATTGGTAATAAAACCGTAGTTAATCACGAAAATATTGGAAGTTCTGTTCTTTTGGAGGAAATGGAAAAAAAAAAAAGAAAAAGGCTCTCCCCTATTTCGTACAACAACCCGGTGAAATTATAGAAATTCTTCCAGAAGACAAGACCAATTGTAACAAACTTCGTTCGAACAAACACAGGCCTCGTTCGTCTGTCCGATCTAACCTTTTGTCTACTTTTCTTTCTCCAGACAGAATTTTTTAATGTAGCACTCTTGTACAAAAAGAAAAACGATTCTTTCGGAATCGGAGCGTGACAGGATCGCACGCGTACACAGTGTTTGAAGGCTCGCGTGAAAAAGCAGAACGAATTTCTTTCTTTCTTTCTCCCTCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTTTCGNNNTTTCTCTCTTTCTCTCTCTTTCTTTCTCGTCTATCGACCGACCGTTTGTGCACCTCAATTTCGCTCGCGAGGCATGTACGATACTCGCAAGTTCCATAGAAGCGAGCATAATGCGTACGATTTAAGTCACGACTCCGCAAGTACATGCATGTCAGTATTTTACAT]
consensusID : consensus_811#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 545 fasta sequence
[AAACTTCGTTCGAACAAGCACAGGCCTCGTTCGTCTGTCCGATCTAACCTTTTGTCTACTTTTCTTTCTCCAGACAGAATTTTTTAATGTAGCACTCTTGTACAAAAAGAAAAACGATTCTTTCGGAATCGGAGCGTGACAGGATCGCACGCGTACACAGTGTTTGAAGGCTCGCGTGAAAAAGCAGAACGAATTTCTTTCTTTCTTTCTCCCTCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTTTCGTTCTTTCTCTCTTTCTCTCTCTTTCTTTCTCGTCTATCGACCGACCGTTTGTGCACCTCAATTTCGCTCGCGAGGCATGTACGATACTCGCAAGTTCCATAGAAGCGAGCATAATGCGTACGATTTAAGTCACGACTCCGCAAGTACATGCATGTCAGTATTTTACATTTATAATATAGAGAGAGAAAAACTAACACACGTACACGAACACGTATATACTCATATATATTTATAATATATGGTATATATTATACATATATATATATATATATATATATATATATATATATATATATA]
[+] EMBL BI507107 [AAACTTCGTTCGAACAAGCACAGGCCTCGTTCGTCTGTCCGATCTAACCTTTTGTCTACTTTTCTTTCTCCAGACAGAATTTTTTAATGTAGCACTCTTGTACAAAAAGAAAAACGATTCTTTCGGAATCGGAGCGTGACAGGATCGCACGCGTACACAGTGTTTGAAGGCTCGCGTGAAAAAGCAGAACGAATTTCTTTCTTTCTTTCTCCCTCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTTTCGTTCTTTCTCTCTTTCTCTCTCTTTCTTTCTCGTCTATCGACCGACCGTTTGTGCACCTCAATTTCGCTCGCGAGGCATGTACGATACTCGCAAGTTCCATAGAAGCGAGCATAATGCGTACGATTTAAGTCACGACTCCGCAAGTACATGCATGTCAGTATTTTACATTTATAATATAGAGAGAGAAAAACTAACACACGTACACGAACACGTATATACTCATATATATTTATAATATATGGTATATATTATACATATATATATATATATATATATATATATATATATATATATATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_811#0 ATGTCGTCCAACTAAATTATTTTGTTGAGAAAAAAAAAAAAAAAAAAAAAGAAAAATAAA 60
consensus_811#1 ------------------------------------------------------------
consensus_811#0 AATGAAATTCTCATTAAATCGATCTTAACTTCGTTCTGCTGTACTATCTGTGTGTTTCGT 120
consensus_811#1 ------------------------------------------------------------
consensus_811#0 CGTCGTTCGTGCATCGTTGTTTGCCATCGATTAATTTTTCGATTCATTGGTAATAAAACC 180
consensus_811#1 ------------------------------------------------------------
consensus_811#0 GTAGTTAATCACGAAAATACTGGAAGTTCTGTTCTTTTGGAGGAAATGGAAAAAAAAAAA 240
consensus_811#1 ------------------------------------------------------------
consensus_811#0 AGAAAAAGGCTCTCCCCTATTTCGTACAACAACCCGGTGAAATTATAGAAATTCTTCCAG 300
consensus_811#1 ------------------------------------------------------------
consensus_811#0 AAGACAAGACCAATTGTAACAAACTTCGTTCGAACAAACACAGGCCTCGTTCGTCTGTCC 360
consensus_811#1 --------------------AAACTTCGTTCGAACAAGCACAGGCCTCGTTCGTCTGTCC 40
***************** **********************
consensus_811#0 GATCTAACCTTTTGTCTACTTTTCTTTCTCCAGACAGAATTTTTTAATGTAGCACTCTTG 420
consensus_811#1 GATCTAACCTTTTGTCTACTTTTCTTTCTCCAGACAGAATTTTTTAATGTAGCACTCTTG 100
************************************************************
consensus_811#0 TACAAAAAGAAAAACGATTCTTTCGGAATCGGAGCGTGACAGGATCGCACGCGTACACAG 480
consensus_811#1 TACAAAAAGAAAAACGATTCTTTCGGAATCGGAGCGTGACAGGATCGCACGCGTACACAG 160
************************************************************
consensus_811#0 TGTTTGAAGGCTCGCGTGAAAAAGCAGAACGAATTTCTTTCTTTCTTTCTCCCTCTCTCG 540
consensus_811#1 TGTTTGAAGGCTCGCGTGAAAAAGCAGAACGAATTTCTTTCTTTCTTTCTCCCTCTCTCG 220
************************************************************
consensus_811#0 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTTTCGNNNTTTCTCTCTTTCTCT 600
consensus_811#1 CTCTCTCTCTCTCTCTCTCTCTCT--------------TTCGTTCTTTCTCTCTTTCTCT 266
************************ **** ***************
consensus_811#0 CTCTTTCTTTCTCGTCTATCGACCGACCGTTTGTGCACCTCAATTTCGCTCGCGAGGCAT 660
consensus_811#1 CTCTTTCTTTCTCGTCTATCGACCGACCGTTTGTGCACCTCAATTTCGCTCGCGAGGCAT 326
************************************************************
consensus_811#0 GTACGATACTCGCAAGTTCCATAGAAGCGAGCATAATGCGTACGATTTAAGTCACGACTC 720
consensus_811#1 GTACGATACTCGCAAGTTCCATAGAAGCGAGCATAATGCGTACGATTTAAGTCACGACTC 386
************************************************************
consensus_811#0 CGCAAGTACATGCATGTCAGTATTTTACAT------------------------------ 750
consensus_811#1 CGCAAGTACATGCATGTCAGTATTTTACATTTATAATATAGAGAGAGAAAAACTAACACA 446
******************************
consensus_811#0 ------------------------------------------------------------
consensus_811#1 CGTACACGAACACGTATATACTCATATATATTTATAATATATGGTATATATTATACATAT 506
consensus_811#0 ---------------------------------------
consensus_811#1 ATATATATATATATATATATATATATATATATATATATA 545
|
|||||||
| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |