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These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 820 cluster # 820       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_820#0 length = 919 sequences # 2  
 consensus_820#1 length = 280 sequences # 1  
consensusID : consensus_820#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 919
fasta sequence 
                              [TTTATATTACTATTATCAGTGAATCGGTCGATGTTCTTACTTTCGTCGGACAAAAAAGAAAGAAATGCGTAAAAACGCTTTATATAAAGTAGTGATCTAAAACGGTAAGAATCCTAAGCTGCACTTAAGGACTAATACCCGTCTTCTACACGTTCTCTTAACCATTCAAAAAATGTCGGGTATCACCCTAATCCGATTAGCGTTGAAAACCCTTAGCCCTAGAAACGGTATTATGTCATTTTAATGATTTTTTTACTCCTTTACTCCATTTTCACTACATTTTGTAATTCGGTTATACGTTAACCGATCATTGTCACAACAATATTATTTGTTTGAACGCGTATAAGATGGTTATCAACGCGCAACGTAATCATGAAAAAGACTAACACGTTTTTTTAATTAATAGTCACTTTCTATTACACGCGAGTTTTATACGATTATACACTTTCATACTTCCTCACTTACTAAATGCTAAAGAAGTTTCGCGCATGAATATATCGAGGATAATAGTTTCACTTTTCTCAACGTCGAAATGTTTAATAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAATAGTAGTAATAGTAATAATAATAGTAGTAATAGTAGTAGTAGTATTTGGAGACTTAGCTGACTAACTTATACTTTAAAGTACGATCGTCGAAAAACATGATTTAACAATTATGTATTCGTCATCATCGCAAGATTACGTCATACGACACGCGTTTTAATGGAAACACTGATTTTTCCTTTCCGTTTCTCTTTTATTACTATAGTCTTAAATCATTCCATAAGGATAAATATTTTTCGTTACGTTCTTTCATAGGATGTTACCTTCTTTTGCACGTTTGAATTTAATATTTTTTTTGATGGTA]

[+] EMBL BI946464             [TTTATATTACTATTATCAGTGAATCGGTCGATGTTCTTACTTTCGTCGGACAAAAAAGAAAGAAATGCGTAAAAACGCTTTATATAAAGTAGTGATCTAAAACGGTAAGAATCCTAAGCTGCACTTAAGGACTAATACCCGTCTTCTACACGTTCTCTTAACCATTCAAAAAATGTCGGGTATCACCCTAATCCGATTAGCGTTGAAAACCCTTAGCCCTAGAAACGGTATTATGTCATTTTAATGATTTTTTTACTCCTTTACTCCATTTTCACTACATTTTGTAATTCGGTTATACGTTAACCGATCATTGTCACAACAATATTATTTGTTTGAACGCGTATAAGATGGTTATCAACGCGCAACGTAATCATGAAAAAGACTAACACGTTTTTTTAATTAATAGTCACTTTCTATTACACGCGAGTTTTATACGATTATACACTTTCATACTTCCTCACTTACTAAATGCTAAAGAAGTTTCGCGCATGAATATATCGAGGATAATAGTTTCACTTTTCTCAACGTCGAAATGTTTAATAGTAGTAGTAGTAGTAGTAGTAGTAGT GTAGTAGTAGTAGTA       AATAGTAGTAATAGTAATAATA  AATAGTAGTA                                                                                                                                                                                                                                                                                                      ]
[-] EMBL BI506152             [                                                                                                                                                                                                                                                                                                                                                 CGCGTATAAGATGGTTATCAACGCGCAACGTAATCATGAAAAAGACTAACACGTTTTTTTAATTAATAGTCACTTTCTATTACACGCGAGTTTTATACGATTATACACTTTCATACTTCCTCACTTACTAAATGCTAAAGAAGTTTCGCGCATGAATATATCGAGGATAATAGTTTCACTTTTCTCAACGTCGAAATGTTTAATAGTAGTAGTAATAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAATAGTAGTAATAGTAATAATAATAGTAGTAATAGTAGTAGTAGTATTTGGAGACTTAGCTGACTAACTTATACTTTAAAGTACGATCGTCGAAAAACATGATTTAACAATTATGTATTCGTCATCATCGCAAGATTACGTCATACGACACGCGTTTTAATGGAAACACTGATTTTTCCTTTCCGTTTCTCTTTTATTACTATAGTCTTAAATCATTCCATAAGGATAAATATTTTTCGTTACGTTCTTTCATAGGATGTTACCTTCTTTTGCACGTTTGAATTTAATATTTTTTTTGATGGTA]




>consensus_820#0
TTTATATTACTATTATCAGTGAATCGGTCGATGTTCTTACTTTCGTCGGACAAAAAAGAA
AGAAATGCGTAAAAACGCTTTATATAAAGTAGTGATCTAAAACGGTAAGAATCCTAAGCT
GCACTTAAGGACTAATACCCGTCTTCTACACGTTCTCTTAACCATTCAAAAAATGTCGGG
TATCACCCTAATCCGATTAGCGTTGAAAACCCTTAGCCCTAGAAACGGTATTATGTCATT
TTAATGATTTTTTTACTCCTTTACTCCATTTTCACTACATTTTGTAATTCGGTTATACGT
TAACCGATCATTGTCACAACAATATTATTTGTTTGAACGCGTATAAGATGGTTATCAACG
CGCAACGTAATCATGAAAAAGACTAACACGTTTTTTTAATTAATAGTCACTTTCTATTAC
ACGCGAGTTTTATACGATTATACACTTTCATACTTCCTCACTTACTAAATGCTAAAGAAG
TTTCGCGCATGAATATATCGAGGATAATAGTTTCACTTTTCTCAACGTCGAAATGTTTAA
TAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTGTAGTAGTAGTAGT
AGTAGTAGTAGTAGTAATAGTAGTAATAGTAATAATAATAGTAGTAATAGTAGTAGTAGT
ATTTGGAGACTTAGCTGACTAACTTATACTTTAAAGTACGATCGTCGAAAAACATGATTT
AACAATTATGTATTCGTCATCATCGCAAGATTACGTCATACGACACGCGTTTTAATGGAA
ACACTGATTTTTCCTTTCCGTTTCTCTTTTATTACTATAGTCTTAAATCATTCCATAAGG
ATAAATATTTTTCGTTACGTTCTTTCATAGGATGTTACCTTCTTTTGCACGTTTGAATTT
AATATTTTTTTTGATGGTA

consensusID : consensus_820#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 280
fasta sequence 
                              [ACTAACACGTTTTTTTAATTAATAGTCACTTTCTATTACACGCGAGTTTTATACGATTATACACTTTCATACTTCCTCACTTACTAAATGCTAAAGAAGTTTCGCGCATGAATATATCGAGGATAATAGTTTCACTTTTCTCAACGTCGAAATGTTTAATAGTAGTAGTAGTAGTAGTAGTAGTAGTGTAGTAGTAGTAGTAGTAGTAGTAGTAATAGTAGTAATAGTAATAATAATAGTAGTAATAGTAGTAGTAGTATTTGGAGACTTAGCTGACTAA]

[-] EMBL BI507033             [ACTAACACGTTTTTTTAATTAATAGTCACTTTCTATTACACGCGAGTTTTATACGATTATACACTTTCATACTTCCTCACTTACTAAATGCTAAAGAAGTTTCGCGCATGAATATATCGAGGATAATAGTTTCACTTTTCTCAACGTCGAAATGTTTAATAGTAGTAGTAGTAGTAGTAGTAGTAGTGTAGTAGTAGTAGTAGTAGTAGTAGTAATAGTAGTAATAGTAATAATAATAGTAGTAATAGTAGTAGTAGTATTTGGAGACTTAGCTGACTAA]




>consensus_820#1
ACTAACACGTTTTTTTAATTAATAGTCACTTTCTATTACACGCGAGTTTTATACGATTAT
ACACTTTCATACTTCCTCACTTACTAAATGCTAAAGAAGTTTCGCGCATGAATATATCGA
GGATAATAGTTTCACTTTTCTCAACGTCGAAATGTTTAATAGTAGTAGTAGTAGTAGTAG
TAGTAGTGTAGTAGTAGTAGTAGTAGTAGTAGTAATAGTAGTAATAGTAATAATAATAGT
AGTAATAGTAGTAGTAGTATTTGGAGACTTAGCTGACTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_820#0      TTTATATTACTATTATCAGTGAATCGGTCGATGTTCTTACTTTCGTCGGACAAAAAAGAA 60
consensus_820#1      ------------------------------------------------------------
                                                                                 

consensus_820#0      AGAAATGCGTAAAAACGCTTTATATAAAGTAGTGATCTAAAACGGTAAGAATCCTAAGCT 120
consensus_820#1      ------------------------------------------------------------
                                                                                 

consensus_820#0      GCACTTAAGGACTAATACCCGTCTTCTACACGTTCTCTTAACCATTCAAAAAATGTCGGG 180
consensus_820#1      ------------------------------------------------------------
                                                                                 

consensus_820#0      TATCACCCTAATCCGATTAGCGTTGAAAACCCTTAGCCCTAGAAACGGTATTATGTCATT 240
consensus_820#1      ------------------------------------------------------------
                                                                                 

consensus_820#0      TTAATGATTTTTTTACTCCTTTACTCCATTTTCACTACATTTTGTAATTCGGTTATACGT 300
consensus_820#1      ------------------------------------------------------------
                                                                                 

consensus_820#0      TAACCGATCATTGTCACAACAATATTATTTGTTTGAACGCGTATAAGATGGTTATCAACG 360
consensus_820#1      ------------------------------------------------------------
                                                                                 

consensus_820#0      CGCAACGTAATCATGAAAAAGACTAACACGTTTTTTTAATTAATAGTCACTTTCTATTAC 420
consensus_820#1      ---------------------ACTAACACGTTTTTTTAATTAATAGTCACTTTCTATTAC 39
                                          ***************************************

consensus_820#0      ACGCGAGTTTTATACGATTATACACTTTCATACTTCCTCACTTACTAAATGCTAAAGAAG 480
consensus_820#1      ACGCGAGTTTTATACGATTATACACTTTCATACTTCCTCACTTACTAAATGCTAAAGAAG 99
                     ************************************************************

consensus_820#0      TTTCGCGCATGAATATATCGAGGATAATAGTTTCACTTTTCTCAACGTCGAAATGTTTAA 540
consensus_820#1      TTTCGCGCATGAATATATCGAGGATAATAGTTTCACTTTTCTCAACGTCGAAATGTTTAA 159
                     ************************************************************

consensus_820#0      TAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTGTAGTAGTAGTAGT 600
consensus_820#1      TAGTAGTAGTAGTAGTAGTAGTAGTAGT---------------------GTAGTAGTAGT 198
                     ****************************                     ***********

consensus_820#0      AGTAGTAGTAGTAGTAATAGTAGTAATAGTAATAATAATAGTAGTAATAGTAGTAGTAGT 660
consensus_820#1      AGTAGTAGTAGTAGTAATAGTAGTAATAGTAATAATAATAGTAGTAATAGTAGTAGTAGT 258
                     ************************************************************

consensus_820#0      ATTTGGAGACTTAGCTGACTAACTTATACTTTAAAGTACGATCGTCGAAAAACATGATTT 720
consensus_820#1      ATTTGGAGACTTAGCTGACTAA-------------------------------------- 280
                     **********************                                      

consensus_820#0      AACAATTATGTATTCGTCATCATCGCAAGATTACGTCATACGACACGCGTTTTAATGGAA 780
consensus_820#1      ------------------------------------------------------------
                                                                                 

consensus_820#0      ACACTGATTTTTCCTTTCCGTTTCTCTTTTATTACTATAGTCTTAAATCATTCCATAAGG 840
consensus_820#1      ------------------------------------------------------------
                                                                                 

consensus_820#0      ATAAATATTTTTCGTTACGTTCTTTCATAGGATGTTACCTTCTTTTGCACGTTTGAATTT 900
consensus_820#1      ------------------------------------------------------------
                                                                                 

consensus_820#0      AATATTTTTTTTGATGGTA 919
consensus_820#1      -------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)