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Apis mellifera
cluster # 848 cluster # 848       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_848#0 length = 482 sequences # 1  
 consensus_848#1 length = 470 sequences # 2  
consensusID : consensus_848#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 482
fasta sequence 
                              [AGGAATCAACAAATTAAATGGCAATCATATCTACAGTCTCATATGATATCAAAAGAAGATCATGATTTTATAGTAGCTTTTGATACAAATGATCCTAATGTTCGAGATGCAAAACTCAAGGAAAATCCACATCAAGCTGCTAAAACATTTCTTAATTTACTTGGTCATATTTCAAAAGATCAAACTATTCAATATATACTTACAATGATTGATGACATGCTTCAGGAAGATCGTAGTCGTGTAGAAATCTTTAGAGAACATTCGAATCGCAAACGTGAATCAGTATGGGGTCCTTTTTTGAATTTGTTAAATAGACAAGATGGATTTATAATGAATATGACCTCACGAATTATTGCTAAACTTGCTTGTTGGAGTCATGATCTAATGGAAAAAACAGATCTTCAATTTTACTTGACATGGTTAAAAGATCAATTGAAACTCAGTAATAATGAATATATTCAATCTGTGGCACGTTGTTTACA]

[+] EMBL BI504920             [AGGAATCAACAAATTAAATGGCAATCATATCTACAGTCTCATATGATATCAAAAGAAGATCATGATTTTATAGTAGCTTTTGATACAAATGATCCTAATGTTCGAGATGCAAAACTCAAGGAAAATCCACATCAAGCTGCTAAAACATTTCTTAATTTACTTGGTCATATTTCAAAAGATCAAACTATTCAATATATACTTACAATGATTGATGACATGCTTCAGGAAGATCGTAGTCGTGTAGAAATCTTTAGAGAACATTCGAATCGCAAACGTGAATCAGTATGGGGTCCTTTTTTGAATTTGTTAAATAGACAAGATGGATTTATAATGAATATGACCTCACGAATTATTGCTAAACTTGCTTGTTGGAGTCATGATCTAATGGAAAAAACAGATCTTCAATTTTACTTGACATGGTTAAAAGATCAATTGAAACTCAGTAATAATGAATATATTCAATCTGTGGCACGTTGTTTACA]




>consensus_848#0
AGGAATCAACAAATTAAATGGCAATCATATCTACAGTCTCATATGATATCAAAAGAAGAT
CATGATTTTATAGTAGCTTTTGATACAAATGATCCTAATGTTCGAGATGCAAAACTCAAG
GAAAATCCACATCAAGCTGCTAAAACATTTCTTAATTTACTTGGTCATATTTCAAAAGAT
CAAACTATTCAATATATACTTACAATGATTGATGACATGCTTCAGGAAGATCGTAGTCGT
GTAGAAATCTTTAGAGAACATTCGAATCGCAAACGTGAATCAGTATGGGGTCCTTTTTTG
AATTTGTTAAATAGACAAGATGGATTTATAATGAATATGACCTCACGAATTATTGCTAAA
CTTGCTTGTTGGAGTCATGATCTAATGGAAAAAACAGATCTTCAATTTTACTTGACATGG
TTAAAAGATCAATTGAAACTCAGTAATAATGAATATATTCAATCTGTGGCACGTTGTTTA
CA

consensusID : consensus_848#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 470
fasta sequence 
                              [TATTAAAGAAATGATACCTGCTTTGCCAGATGAAAAAATTGATATGCTAGCAGCTACAAGTATTCTACAACAACAAGCTGCTGACATTAGGAATCAACAAATTAAATGGCAATCATATCTACAGTCTCATATGATATCAAAAGAAGATCATGATTTTATAGTAGCTTTTGATACAAATGATCCTAATGTTCGAGATGCAAAACTCAAGGAAAATCCACATCAAGCTGCTAAAACATTTCTTAATTTACTTGGTCATATTTCAAAAGATCAAACTATTCAATATATACTTACAATGATTGATGACATGCTTCAGGAAGATCGTAGTCGTGTAGAAATCTTTAGAGAACATTCGAATCGCAAACGTGAATCAGTATGGGGTCCTTTTTTGAATTTGTTAAATAGACAAGATGGATTTATAATGAATATGACCTCACGAATTATTGCTAAACTTGTCTATGTAAAAAAAAAAA]

[+] EMBL BI516563             [TATTAAAGAAATGATACCTGCTTTGCCAGATGAAAAAATTGATATGCTAGCAGCTACAAGTATTCTACAACAACAAGCTGCTGACATTAGGAATCAACAAATTAAATGGCAATCATATCTACAGTCTCATATGATATCAAAAGAAGATCATGATTTTATAGTAGCTTTTGATACAAATGATCCTAATGTTCGAGATGCAAAACTCAAGGAAAATCCACATCAAGCTGCTAAAACATTTCTTAATTTACTTGGTCATATTTCAAAAGATCAAACTATTCAATATATACTTACAATGATTGATGACATGCTTCAGGAAGATCGTAGTCGTGTAGAAATCTTTAGAGAACATTCGAATCGCAAACGTGAATCAGTATGGGGTCCTTTTTTGAATTTGTTAAATAGACAAGATGGATTTATAATGAATATGACCTCACGAATTA                              ]
[+] EMBL BI503627             [                         CCAGATGAAAAAATTGATATGCTAGCAGCTACAAGTATTCTACAACAACAAGCTGCTGACATTAGGAATCAACAAATTAAATGGCAATCATATCTACAGTCTCATATGATATCAAAAGAAGATCATGATTTTATAGTAGCTTTTGATACAAATGATCCTAATGTTCGAGATGCAAAACTCAAGGAAAATCCACATCAAGCTGCTAAAACATTTCTTAATTTACTTGGTCATATTTCAAAAGATCAAACTATTCAATATATACTTACAATGATTGATGACATGCTTCAGGAAGATCGTAGTCGTGTAGAAATCTTTAGAGAACATTCGAATCGCAAACGTGAATCAGTATGGGGTCCTTTTTTGAATTTGTTAAATAGACAAGATGGATTTATAATGAATATGACCTCACGAATTATTGCTAAACTTGTCTATGTAAAAAAAAAAA]




>consensus_848#1
TATTAAAGAAATGATACCTGCTTTGCCAGATGAAAAAATTGATATGCTAGCAGCTACAAG
TATTCTACAACAACAAGCTGCTGACATTAGGAATCAACAAATTAAATGGCAATCATATCT
ACAGTCTCATATGATATCAAAAGAAGATCATGATTTTATAGTAGCTTTTGATACAAATGA
TCCTAATGTTCGAGATGCAAAACTCAAGGAAAATCCACATCAAGCTGCTAAAACATTTCT
TAATTTACTTGGTCATATTTCAAAAGATCAAACTATTCAATATATACTTACAATGATTGA
TGACATGCTTCAGGAAGATCGTAGTCGTGTAGAAATCTTTAGAGAACATTCGAATCGCAA
ACGTGAATCAGTATGGGGTCCTTTTTTGAATTTGTTAAATAGACAAGATGGATTTATAAT
GAATATGACCTCACGAATTATTGCTAAACTTGTCTATGTAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_848#0      ------------------------------------------------------------
consensus_848#1      TATTAAAGAAATGATACCTGCTTTGCCAGATGAAAAAATTGATATGCTAGCAGCTACAAG 60
                                                                                 

consensus_848#0      ----------------------------AGGAATCAACAAATTAAATGGCAATCATATCT 32
consensus_848#1      TATTCTACAACAACAAGCTGCTGACATTAGGAATCAACAAATTAAATGGCAATCATATCT 120
                                                 ********************************

consensus_848#0      ACAGTCTCATATGATATCAAAAGAAGATCATGATTTTATAGTAGCTTTTGATACAAATGA 92
consensus_848#1      ACAGTCTCATATGATATCAAAAGAAGATCATGATTTTATAGTAGCTTTTGATACAAATGA 180
                     ************************************************************

consensus_848#0      TCCTAATGTTCGAGATGCAAAACTCAAGGAAAATCCACATCAAGCTGCTAAAACATTTCT 152
consensus_848#1      TCCTAATGTTCGAGATGCAAAACTCAAGGAAAATCCACATCAAGCTGCTAAAACATTTCT 240
                     ************************************************************

consensus_848#0      TAATTTACTTGGTCATATTTCAAAAGATCAAACTATTCAATATATACTTACAATGATTGA 212
consensus_848#1      TAATTTACTTGGTCATATTTCAAAAGATCAAACTATTCAATATATACTTACAATGATTGA 300
                     ************************************************************

consensus_848#0      TGACATGCTTCAGGAAGATCGTAGTCGTGTAGAAATCTTTAGAGAACATTCGAATCGCAA 272
consensus_848#1      TGACATGCTTCAGGAAGATCGTAGTCGTGTAGAAATCTTTAGAGAACATTCGAATCGCAA 360
                     ************************************************************

consensus_848#0      ACGTGAATCAGTATGGGGTCCTTTTTTGAATTTGTTAAATAGACAAGATGGATTTATAAT 332
consensus_848#1      ACGTGAATCAGTATGGGGTCCTTTTTTGAATTTGTTAAATAGACAAGATGGATTTATAAT 420
                     ************************************************************

consensus_848#0      GAATATGACCTCACGAATTATTGCTAAACTTGCTTGTTGGAGTCATGATCTAATGGAAAA 392
consensus_848#1      GAATATGACCTCACGAATTATTGCTAAACTTGTCT------------ATGTAAAAAAAAA 468
                     ********************************  *            ** ***   ****

consensus_848#0      AACAGATCTTCAATTTTACTTGACATGGTTAAAAGATCAATTGAAACTCAGTAATAATGA 452
consensus_848#1      AA---------------------------------------------------------- 470
                     **                                                          

consensus_848#0      ATATATTCAATCTGTGGCACGTTGTTTACA 482
consensus_848#1      ------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)