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Apis mellifera
cluster # 852 cluster # 852       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_852#0 length = 503 sequences # 2  
 consensus_852#1 length = 403 sequences # 1  
consensusID : consensus_852#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 503
fasta sequence 
                              [ACAAACTCGGCAAGGGAACGCAACATCTCGTTCGAACGCACATTGTCGAGCGAAGAAGAGATCACGTCGGCGAGACGACGTCCTTTCCGATAACCGCCGCGTTTACGAGAAAGGGACAGACAGAAGGGGGAGAGCGTAGCGGTGTCCACGCCAACGAAAACACCAACGAAGCGGAATTCTGCGGTTTTCGCGAGGAGGGCGAGGTCGGTGTTAAACCAGCAAGATTACCGGCCGCGGCGGTTGCGCCAAATACTGTGGTACAGCTACTTCACCCGGCAACATTTCATTCTCCAGCTTTCGACAGTCCTTCACCTCCAATGTTAACTACCTGAAACGGAGGTTCTCGTCAGGGGATTTGAGCTCGGAGCTCGACGATGAACCAAGCACAGACTCCGGGCTGGCCTCCATGGCCAGGGATTCGTCATCCCAATCGTATCAAGCGGTGCCCGAACGCCCGTTGCAGTCCCAACCTACGCCGGTTCCGCCGGCCAGCCAACCGCCCG]

[+] EMBL BI515381             [ACAAACTCGGCAAGGGAACGCAACATCTCGTTCGAACGCACATTGTCGAGCGAAGAAGAGATCACGTCGGCGAGACGACGTCCTTTCCGATAACCGCCGCGTTTACGAGAAAGGGACAGACAGAAGGGGGAGAGCGTAGCGGTGTCCACGCCAACGAAAACACCAACGAAGCGGAATTCTGCGGTTTTCGCGAGGAGGGCGAGGTCGGTGTTAAACCAGCAAGATTACCGGCCGCGGCGGTTGCGCCAAATACTGTGGTACAGCTACTTCACCCGGCAACATTTCATTCTCCAGCTTTCGACAGTCCTTCACCTCCAATGTTAACTACCTGAAACGGAGGTTCTCGTCAGGGGATTTGAGCTCGGAGCTCGACGATGAACCAAGCACAGACTCCGGGCTGGCCTCCATGGCCAGGGATTCGTCATCCCAATCGTATCAAGCGGTGCCCGAACGCCCGTTGC                                          ]
[+] EMBL BI510950             [                                               GAGCGAAGAAGAGATCACGTCGGCGAGACGACGTCCTTTCCGATAACCGCCGCGTTTACGAGAAAGGGACAGACAGAAGGGGGAGAGCGTAGCGGTGTCCACGCCAACGAAAACACCAACGAAGCGGAATTCTGCGGTTTTCGCGAGGAGGGCGAGGTCGGTGTTAAACCAGCAAGATTACCGGCCGCGGCGGTTGCGCCAAATACTGTGGTACAGCTACTTCACCCGGCAACATTTCATTCTCCAGCTTTCGACAGTCCTTCACCTCCAATGTTAACTACCTGAAACGGAGGTTCTCGTCAGGGGATTTGAGCTCGGAGCTCGACGATGAACCAAGCACAGACTCCGGGCTGGCCTCCATGGCCAGGGATTCGTCATCCCAATCGTATCAAGCGGTGCCCGAACGCCCGTTGCAGTCCCAACCTACGCCGGTTCCGCCGGCCAGCCAACCGCCCG]




>consensus_852#0
ACAAACTCGGCAAGGGAACGCAACATCTCGTTCGAACGCACATTGTCGAGCGAAGAAGAG
ATCACGTCGGCGAGACGACGTCCTTTCCGATAACCGCCGCGTTTACGAGAAAGGGACAGA
CAGAAGGGGGAGAGCGTAGCGGTGTCCACGCCAACGAAAACACCAACGAAGCGGAATTCT
GCGGTTTTCGCGAGGAGGGCGAGGTCGGTGTTAAACCAGCAAGATTACCGGCCGCGGCGG
TTGCGCCAAATACTGTGGTACAGCTACTTCACCCGGCAACATTTCATTCTCCAGCTTTCG
ACAGTCCTTCACCTCCAATGTTAACTACCTGAAACGGAGGTTCTCGTCAGGGGATTTGAG
CTCGGAGCTCGACGATGAACCAAGCACAGACTCCGGGCTGGCCTCCATGGCCAGGGATTC
GTCATCCCAATCGTATCAAGCGGTGCCCGAACGCCCGTTGCAGTCCCAACCTACGCCGGT
TCCGCCGGCCAGCCAACCGCCCG

consensusID : consensus_852#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 403
fasta sequence 
                              [TTATTCCACAAACTCGGCAAGGGAACGCAACATCTCGTTCGAACGCACATTGTCGAGCGAAGAAGAGATCACGTCGGCGAGACGACGTCCTTTCCGATAACCGCCGCGTTTACGAGAAAGGGACAGACAGAAGGGGGAGAGCGTNNNGGTGTCCACGCCAACGAAAACACCAACGAAGCGGAATTCTGCGGTTTTCGCGAGGAGGGCGAGGTCGGTGTTAAACCAGCAAGATTACCGGCCGCGGCGGTTGCGCCAAATACTGTGGTACAGCTACTTCACCCGGCAACATTTCATTCTCCAGCTTTCGACAGTCCTTCACCTCCAATGTTAACTACCTGAAACGGAGTTTGTCTTCCAGGTTCTCGTCAGGGGATTTGAGCTCGGAGCTCGACGATGAACCAAG]

[+] EMBL BI510780             [TTATTCCACAAACTCGGCAAGGGAACGCAACATCTCGTTCGAACGCACATTGTCGAGCGAAGAAGAGATCACGTCGGCGAGACGACGTCCTTTCCGATAACCGCCGCGTTTACGAGAAAGGGACAGACAGAAGGGGGAGAGCGTNNNGGTGTCCACGCCAACGAAAACACCAACGAAGCGGAATTCTGCGGTTTTCGCGAGGAGGGCGAGGTCGGTGTTAAACCAGCAAGATTACCGGCCGCGGCGGTTGCGCCAAATACTGTGGTACAGCTACTTCACCCGGCAACATTTCATTCTCCAGCTTTCGACAGTCCTTCACCTCCAATGTTAACTACCTGAAACGGAGTTTGTCTTCCAGGTTCTCGTCAGGGGATTTGAGCTCGGAGCTCGACGATGAACCAAG]




>consensus_852#1
TTATTCCACAAACTCGGCAAGGGAACGCAACATCTCGTTCGAACGCACATTGTCGAGCGA
AGAAGAGATCACGTCGGCGAGACGACGTCCTTTCCGATAACCGCCGCGTTTACGAGAAAG
GGACAGACAGAAGGGGGAGAGCGTNNNGGTGTCCACGCCAACGAAAACACCAACGAAGCG
GAATTCTGCGGTTTTCGCGAGGAGGGCGAGGTCGGTGTTAAACCAGCAAGATTACCGGCC
GCGGCGGTTGCGCCAAATACTGTGGTACAGCTACTTCACCCGGCAACATTTCATTCTCCA
GCTTTCGACAGTCCTTCACCTCCAATGTTAACTACCTGAAACGGAGTTTGTCTTCCAGGT
TCTCGTCAGGGGATTTGAGCTCGGAGCTCGACGATGAACCAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_852#0      -------ACAAACTCGGCAAGGGAACGCAACATCTCGTTCGAACGCACATTGTCGAGCGA 53
consensus_852#1      TTATTCCACAAACTCGGCAAGGGAACGCAACATCTCGTTCGAACGCACATTGTCGAGCGA 60
                            *****************************************************

consensus_852#0      AGAAGAGATCACGTCGGCGAGACGACGTCCTTTCCGATAACCGCCGCGTTTACGAGAAAG 113
consensus_852#1      AGAAGAGATCACGTCGGCGAGACGACGTCCTTTCCGATAACCGCCGCGTTTACGAGAAAG 120
                     ************************************************************

consensus_852#0      GGACAGACAGAAGGGGGAGAGCGTAGCGGTGTCCACGCCAACGAAAACACCAACGAAGCG 173
consensus_852#1      GGACAGACAGAAGGGGGAGAGCGTNNNGGTGTCCACGCCAACGAAAACACCAACGAAGCG 180
                     ************************   *********************************

consensus_852#0      GAATTCTGCGGTTTTCGCGAGGAGGGCGAGGTCGGTGTTAAACCAGCAAGATTACCGGCC 233
consensus_852#1      GAATTCTGCGGTTTTCGCGAGGAGGGCGAGGTCGGTGTTAAACCAGCAAGATTACCGGCC 240
                     ************************************************************

consensus_852#0      GCGGCGGTTGCGCCAAATACTGTGGTACAGCTACTTCACCCGGCAACATTTCATTCTCCA 293
consensus_852#1      GCGGCGGTTGCGCCAAATACTGTGGTACAGCTACTTCACCCGGCAACATTTCATTCTCCA 300
                     ************************************************************

consensus_852#0      GCTTTCGACAGTCCTTCACCTCCAATGTTAACTACCTGAAACGGAG------------GT 341
consensus_852#1      GCTTTCGACAGTCCTTCACCTCCAATGTTAACTACCTGAAACGGAGTTTGTCTTCCAGGT 360
                     **********************************************            **

consensus_852#0      TCTCGTCAGGGGATTTGAGCTCGGAGCTCGACGATGAACCAAGCACAGACTCCGGGCTGG 401
consensus_852#1      TCTCGTCAGGGGATTTGAGCTCGGAGCTCGACGATGAACCAAG----------------- 403
                     *******************************************                 

consensus_852#0      CCTCCATGGCCAGGGATTCGTCATCCCAATCGTATCAAGCGGTGCCCGAACGCCCGTTGC 461
consensus_852#1      ------------------------------------------------------------
                                                                                 

consensus_852#0      AGTCCCAACCTACGCCGGTTCCGCCGGCCAGCCAACCGCCCG 503
consensus_852#1      ------------------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)