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Apis mellifera
cluster # 877 cluster # 877       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_877#0 length = 539 sequences # 2  
 consensus_877#1 length = 314 sequences # 1  
consensusID : consensus_877#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 539
fasta sequence 
                              [GGCTGTATCTTGCTCGGTGATTTATAGTCTTGTGTGTAGTTGTGCAACTTTCTTCCATTGTTCTACAAGAAACACGAGCCAGATACAGTCTCACCGTTTGAGATGGCATTGGAACGGGCGGAGGAACTTGCTGTTTGCAGCGATGCTGGGCGTACCGCAAAATTGGGGACCCCATGTTCTAGTCTCTACACCTTTCATTGGTTTGGTTTGTAAACTGTATCGGAACCAATGCATTTCTATTTGCAATATTTTTGTAATAATATACCAATCGAGTTCGTCAAACAAGTTAAAAGAGCGTTTGATTCGATA-TTTTTTTTTTTTCAGAAGTATGGCGGTTTACGTAAAAAAATGTGCACTTATATAGCTTAAAGAAAATTTGTATAGTCAATTTNNNCTTTATAGATTTAAAATAGCGTTTTAAATGTTTACTTAATGATCGAAGAATAATTTTATATGTAGATTTTGTACTTACTTATAAATGTTAATTAACAGTTTTGTAAATATTTGTGATACAGCACAACAGCTAGCGGAAAAAATTA]

[+] EMBL BI946449             [GGCTGTATCTTGCTCGGTGATTTATAGTCTTGTGTGTAGTTGTGCAACTTTCTTCCATTGTTCTACAAGAAACACGAGCCAGATACAGTCTCACCGTTTGAGATGGCATTGGAACGGGCGGAGGAACTTGCTGTTTGCAGCGATGCTGGGCGTACCGCAAAATTGGGGACCCCATGTTCTAGTCTCTACACCTTTCATTGGTTTGGTTTGTAAACTGTATCGGAACCAATGCATTTCTATTTGCAATATTTTTGTAATAATATACCAATCGAGTTCGTCAAACAAGTTAAAAGAGCGTTTGATTCGATATTTTTTTTTTTTTCAGAAGTATGGCGGTTTACGTAAAAAAATGTGCACTTATATAGCTTAAAGAAAA TTGTATAGTCAATTTAACCTTTATAGATTTAAAATAGCGTTTTAAATGTTTACTTAATGATCGAAGAATAATTTTATATGTAGA TTTGTACTTACTTATAAATGTTAATTAACAGTTTTGTAAATATTTGTGATACAGCACAACAGCTAGCGGAAAAAATTA]
[-] EMBL BI505149             [                                                                                                                                                                                         CTACCCCTTTCATTGGTTTGGTTTGTAAACTGTATCGGAACCAATGCATTTCTATTTGCAATATTTTTGTAATAATATACCCATCGAGTTCGTCAAACAAGTTAAAAGAGCGTTTGATTCGATA TTTTTTTTTTTTCAGAAGTATGGCGGTTTACGTAAAAAAATATGTACTTATATAGCTTAAAGAAAATTTGTATAGTCAATTTNNNCTTTATAGATTT AAATAGCGTTTTAAATGTTTACTTAATGATCGAAGAATAATTTTATATGTAGATTTTGTACTTACT                                                                  ]




>consensus_877#0
GGCTGTATCTTGCTCGGTGATTTATAGTCTTGTGTGTAGTTGTGCAACTTTCTTCCATTG
TTCTACAAGAAACACGAGCCAGATACAGTCTCACCGTTTGAGATGGCATTGGAACGGGCG
GAGGAACTTGCTGTTTGCAGCGATGCTGGGCGTACCGCAAAATTGGGGACCCCATGTTCT
AGTCTCTACACCTTTCATTGGTTTGGTTTGTAAACTGTATCGGAACCAATGCATTTCTAT
TTGCAATATTTTTGTAATAATATACCAATCGAGTTCGTCAAACAAGTTAAAAGAGCGTTT
GATTCGATATTTTTTTTTTTTCAGAAGTATGGCGGTTTACGTAAAAAAATGTGCACTTAT
ATAGCTTAAAGAAAATTTGTATAGTCAATTTNNNCTTTATAGATTTAAAATAGCGTTTTA
AATGTTTACTTAATGATCGAAGAATAATTTTATATGTAGATTTTGTACTTACTTATAAAT
GTTAATTAACAGTTTTGTAAATATTTGTGATACAGCACAACAGCTAGCGGAAAAAATTA

consensusID : consensus_877#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 314
fasta sequence 
                              [CTCGGTGATTTATAGTCTTGTGTGTAGTTGTGCAACTTTCTTCCATTGTTCTACAAGAATACAATAAACACAACCACCACCACCACGAGAGCACAACGTCGAGATCTTTCATGACGGCGGTGACGATGATGACCGATATCACCATCACCCACACGACCACCCTACAACGCGTCATCCCTCAACGCGTCGGTCGTGAAACGATCCCGAGACGACAGCTTTTTTTCACCGGTGCATCCTGCCGTGCGCCGAGGGTTGCTTTTTTATTGAACTTGTAAAGGGAGATGAGCAGACGGAATGGAATAAAGCAAAAAAAA]

[+] EMBL BI503506             [CTCGGTGATTTATAGTCTTGTGTGTAGTTGTGCAACTTTCTTCCATTGTTCTACAAGAATACAATAAACACAACCACCACCACCACGAGAGCACAACGTCGAGATCTTTCATGACGGCGGTGACGATGATGACCGATATCACCATCACCCACACGACCACCCTACAACGCGTCATCCCTCAACGCGTCGGTCGTGAAACGATCCCGAGACGACAGCTTTTTTTCACCGGTGCATCCTGCCGTGCGCCGAGGGTTGCTTTTTTATTGAACTTGTAAAGGGAGATGAGCAGACGGAATGGAATAAAGCAAAAAAAA]




>consensus_877#1
CTCGGTGATTTATAGTCTTGTGTGTAGTTGTGCAACTTTCTTCCATTGTTCTACAAGAAT
ACAATAAACACAACCACCACCACCACGAGAGCACAACGTCGAGATCTTTCATGACGGCGG
TGACGATGATGACCGATATCACCATCACCCACACGACCACCCTACAACGCGTCATCCCTC
AACGCGTCGGTCGTGAAACGATCCCGAGACGACAGCTTTTTTTCACCGGTGCATCCTGCC
GTGCGCCGAGGGTTGCTTTTTTATTGAACTTGTAAAGGGAGATGAGCAGACGGAATGGAA
TAAAGCAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_877#0      GGCTGTATCTTGCTCGGTGATTTATAGTCTTGTGTGTAGTTGTGCAACTTTCTTCCATTG 60
consensus_877#1      ------------CTCGGTGATTTATAGTCTTGTGTGTAGTTGTGCAACTTTCTTCCATTG 48
                                 ************************************************

consensus_877#0      TTCTACAAGAAACACGAGCCAGATACAGTCTCACCGTTTGAGATGGCATTGGAACGGGCG 120
consensus_877#1      TTCTACAAGAA-TACAA--TAAACACAACCACCACCACCACGAGAGCAC---AAC--GTC 100
                     ***********  ** *   * * ***  * *  *      **  ***    ***  *  

consensus_877#0      GAGGAACTTGCTGTTTGCAGCGATGCTG--GGCGTACCGCAAAATTGGGGACCCCAT-GT 177
consensus_877#1      GAGATCTTTCATGACGGCGGTGACGATGATGACCGATATCACCATCACCCACACGACCAC 160
                     ***    **  **   ** * ** * **  * *  *   **  **     ** * *    

consensus_877#0      TCTA-GTCTCTACACCTTTCATTGGTTTGGTTTGTAAACTGTATCGGAACCAATGCATTT 236
consensus_877#1      CCTACAACGCGTCATCCCTCAACGCGTCGGTCGTGAAACGATCCCGAGACGACAGC-TTT 219
                      ***   * *  ** *  ***  *  * ***    ****  *  **  ** *  ** ***

consensus_877#0      CTATTTGCAATAT-TTTTGTAATAATATACCAATCGAGTTCGTCAAACAAGTTAAAAGAG 295
consensus_877#1      TTTTCACCGGTGCATCCTGCCGTGCGCCGAGGGTTGC-TTTTTTATTGAACTTGTAAAGG 278
                      * *   *  *   *  **   *          * *  **  * *   ** **  **  *

consensus_877#0      CGTTTGATTCGATATTTTTTTTTTTTCAGAAGTATGGCGGTTTACGTAAAAAAATGTGCA 355
consensus_877#1      GAGATGAGCAGACGGAAT----------GGAATAAAGCA--------AAAAAAA------ 314
                         ***   **     *          * * **  **         *******      

consensus_877#0      CTTATATAGCTTAAAGAAAATTTGTATAGTCAATTTNNNCTTTATAGATTTAAAATAGCG 415
consensus_877#1      ------------------------------------------------------------
                                                                                 

consensus_877#0      TTTTAAATGTTTACTTAATGATCGAAGAATAATTTTATATGTAGATTTTGTACTTACTTA 475
consensus_877#1      ------------------------------------------------------------
                                                                                 

consensus_877#0      TAAATGTTAATTAACAGTTTTGTAAATATTTGTGATACAGCACAACAGCTAGCGGAAAAA 535
consensus_877#1      ------------------------------------------------------------
                                                                                 

consensus_877#0      ATTA 539
consensus_877#1      ----


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)