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Apis mellifera
cluster # 884 cluster # 884       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_884#0 length = 508 sequences # 2  
 consensus_884#1 length = 412 sequences # 1  
consensusID : consensus_884#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 508
fasta sequence 
                              [CTCTCACGATTCCGTTCTCGCTCTGCCCTCCGTCTCGTTATTCCGTTCGTACAACGCGTCTGAGTGTTGCTTTGCATCGTTACTTCCGGTGAACATCACGCCGGGCCAACGCTCTAGACTGCACCATTCACCAGCGAATCATTATTACGAGATAACCATTCTTCTGGATAATTATCATCGCCAAATAAGGTGAAAGAGATAAAAAAAAAAGAGAAGAGAGAGACAGGGAAAAATACATGCGAAATTGAAAATTGAAAGAGAAGAGGAAAATATATATTGCTCTGCAGGAAGAAAGCAGAAACCTTAACAACGAAGACGATGGAGTGACGGAGCACAAGCCGAACGTCCGATCACCGTTCGCGAATACTTCCTTGAAGGGAGAAGGAGCAGGAGTAAAGCCACGGGTGGCAGAAGAGGAGGAAGGACAGTGGAGGTAGGAGAAAGTGGTAGAACGGAGGTGGTGGTGGTGAGGAAGAGAAGAGTAGAAGAGGAAGAGGGAAGTGAAGCA]

[+] EMBL BI513866             [CTCTCACGATTCCGTTCTCGCTCTGCCCTCCGTCTCGTTATTCCGTTCGTACAACGCGTCTGAGTGTTGCTTTGCATCGTTACTTCCGGTGAACATCACGCCGGGCCAACGCTCTAGACTGCACCATTCACCAGCGAATCATTATTACGAGATAACCATTCTTCTGGATAATTATCATCGCCAAATAAGGTGAAAGAGATAAAAAAAAAAGAGAAGAGAGAGACAGGGAAAAATACATGCGAAATTGAAAATTGAAAGAGAAGAGGAAAATATATATTGCTCTGCAGGAAGAAAGCAGAAACCTTAACAACGAAGACGATGGAGTGACGGAGCACAAGCCGAACGTCCGATCACCGTTCGCGAATACTTCCTTGAAGGGAGAAGGAGCAGGAGTAAAGCCACGGGTGGCAGAAGAGGAGGAAGGACAGTGGAGGTAGGAGAAAGTGGTAGAACGGAGGTGGTGGTGGTGAGGAAGAGAAGAGTAGAAGAGGAAGAGGGAAGTGAAGCA]
[+] EMBL BI513910             [CTCTCACGATTCCGTTCTCGCTCTGCCCTCCGTCTCGTTATTCCGTTCGTACAACGCGTCTGAGTGTTGCTTTGCATCGTTACTTCCGGTGAACATCACGCCGGGCCAACGCTCTAGACTGCACCATTCACCAGCGAATCATTATTACGAGATAACCATTCTTCTGGATAATTATCATCGCCAAATAAGGTGAAAGAGATAAAAAAAAAAGAGAAGAGAGAGACAGGGAAAAATACATGCGAAATTGAAAATTGAAAGAGAAGAGGAAAATATATATTGCTCTGCAGGAAGAAAGCAGAAACCTTAACAACGAAGACGATGGAGTGACGGAGCACAAGCCGAACGTCCGATCACCGTTCGCGAATACTTCCTTGAAGGGAGAAGGAGCAGGAGTAAA                                                                                                               ]




>consensus_884#0
CTCTCACGATTCCGTTCTCGCTCTGCCCTCCGTCTCGTTATTCCGTTCGTACAACGCGTC
TGAGTGTTGCTTTGCATCGTTACTTCCGGTGAACATCACGCCGGGCCAACGCTCTAGACT
GCACCATTCACCAGCGAATCATTATTACGAGATAACCATTCTTCTGGATAATTATCATCG
CCAAATAAGGTGAAAGAGATAAAAAAAAAAGAGAAGAGAGAGACAGGGAAAAATACATGC
GAAATTGAAAATTGAAAGAGAAGAGGAAAATATATATTGCTCTGCAGGAAGAAAGCAGAA
ACCTTAACAACGAAGACGATGGAGTGACGGAGCACAAGCCGAACGTCCGATCACCGTTCG
CGAATACTTCCTTGAAGGGAGAAGGAGCAGGAGTAAAGCCACGGGTGGCAGAAGAGGAGG
AAGGACAGTGGAGGTAGGAGAAAGTGGTAGAACGGAGGTGGTGGTGGTGAGGAAGAGAAG
AGTAGAAGAGGAAGAGGGAAGTGAAGCA

consensusID : consensus_884#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 412
fasta sequence 
                              [AAGAATTCCGGAGAGACGCGTAGGAAAAAGAGAAAGAGAAAAGGGAGGGGAGAGAGAGAGAAAGAGAGAGAGAGAGAGTGTACTCAGCCGAAAGACACCGGTACATAACGAACGAACGTTGTTTTCTCGTGCTTTTATCTTTACCGTGTATTATCGTCGTGTGTGTCGCGTTTAATCTACGGCCCCTACCGACTAAGGCCGCTGTCTCCGTTCCGGAATACACACGCGTTATCAAATGCACGCACGTACGCACGCGAAAAGATTGCTTCCGGATGCAGTGAATTTCAGCCGGTGAACATCACGCCGGGCCAACGCTCTAGACTGCACCATTCACCAGCGAATCATTATTACGAGATAACCATTCTTCTGGATAATTATCATCGCCAAATAAGGTGAAAGAGATAAAAAAAAA]

[+] EMBL BI503490             [AAGAATTCCGGAGAGACGCGTAGGAAAAAGAGAAAGAGAAAAGGGAGGGGAGAGAGAGAGAAAGAGAGAGAGAGAGAGTGTACTCAGCCGAAAGACACCGGTACATAACGAACGAACGTTGTTTTCTCGTGCTTTTATCTTTACCGTGTATTATCGTCGTGTGTGTCGCGTTTAATCTACGGCCCCTACCGACTAAGGCCGCTGTCTCCGTTCCGGAATACACACGCGTTATCAAATGCACGCACGTACGCACGCGAAAAGATTGCTTCCGGATGCAGTGAATTTCAGCCGGTGAACATCACGCCGGGCCAACGCTCTAGACTGCACCATTCACCAGCGAATCATTATTACGAGATAACCATTCTTCTGGATAATTATCATCGCCAAATAAGGTGAAAGAGATAAAAAAAAA]




>consensus_884#1
AAGAATTCCGGAGAGACGCGTAGGAAAAAGAGAAAGAGAAAAGGGAGGGGAGAGAGAGAG
AAAGAGAGAGAGAGAGAGTGTACTCAGCCGAAAGACACCGGTACATAACGAACGAACGTT
GTTTTCTCGTGCTTTTATCTTTACCGTGTATTATCGTCGTGTGTGTCGCGTTTAATCTAC
GGCCCCTACCGACTAAGGCCGCTGTCTCCGTTCCGGAATACACACGCGTTATCAAATGCA
CGCACGTACGCACGCGAAAAGATTGCTTCCGGATGCAGTGAATTTCAGCCGGTGAACATC
ACGCCGGGCCAACGCTCTAGACTGCACCATTCACCAGCGAATCATTATTACGAGATAACC
ATTCTTCTGGATAATTATCATCGCCAAATAAGGTGAAAGAGATAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_884#0      CTCTCACGATTCCGTTCTCGCTCTGCCCTCCGTCTCGTTATTCCGTTCGTACAACGCGTC 60
consensus_884#1      -----------------------------------AAGAATTCCGGAGAGACG-CGTAGG 24
                                                            ******     **  **    

consensus_884#0      TGAGTGTTGCTTTGCATCGTTACTTCCGGTGAACATCACGCCGGGCCAACGCTCTAGACT 120
consensus_884#1      AAAAAGAGAAAGAGAAAAGGGAGGGGAGAGAGAGAGAAAGAGAGAGAGAGAGAGTGTACT 84
                       *  *       * *  *  *     *    * *  * *   *    *     *  ***

consensus_884#0      GCACCATTCACCAGCGAATCATTATTACGAGATAACCATTCTTCTGGATAATTATCATCG 180
consensus_884#1      CAGCCGAAAGACACCGGTACATAACGA-ACGAACGTTGTTTTCTCGTGCTTTTATCTTTA 143
                        **      ** **   *** *  *   **      ** *   *     ***** *  

consensus_884#0      CCAAATAAGGTGAAAGAGATAAAAAAAAAAGAGAAGAGAGAGACAGGGAAAAATACATGC 240
consensus_884#1      CCGTGTA---TTATCGTCGTGTGTGTCGCGTTTAATCTACGGCCCCTACCGACTAAGGCC 200
                     **   **   * *  *   *             **   *  * *       * **    *

consensus_884#0      GAAATTGAAAATTGAAAGAGAAGAGGAAAATATATATTGCTCTGCAGGAAGAAAGCAGAA 300
consensus_884#1      GCTGTCTCCGTTCCGGAATACACACGCGT-TATCAAATGCACGCACGTACGCACGCGAAA 259
                     *   *      *    *    * * *    ***  * *** *    * * * * **  **

consensus_884#0      ACCTTAACAACGAAGACGATGGAGTGACGGAGCACAAGCCGAACGTCCGATCACCGTTCG 360
consensus_884#1      AGATTGCTTCCGGATGCAGTGAATTT-CAGCCGGTGAACATCACGCCGGGCCAACGCTCT 318
                     *  **     ** *  *  ** * *  * *      * *   *** * *  ** ** ** 

consensus_884#0      CGAATACTTCCTTGAAGGGAGAAGGAGCAGGAGTAAAGCCACGGGTGGCAGAAGAGGAGG 420
consensus_884#1      AGACTGCACCATTCACCAGCGAATCATTATTA-CGAGATAACCATT--CTTCTGGATAAT 375
                      ** * *  * ** *   * ***  *  *  *   *    **   *  *    *   *  

consensus_884#0      AAGGACAGTGGAGGTAGGAGAAAGTGGTAGAACGGAGGTGGTGGTGGTGAGGAAGAGAAG 480
consensus_884#1      TATCATCGCCAAATAAGGTGAAAGAGATAAAAAAAAA----------------------- 412
                      *  *  *   *   *** ***** * ** **   *                        

consensus_884#0      AGTAGAAGAGGAAGAGGGAAGTGAAGCA 508
consensus_884#1      ----------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)