cluster # 885

These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 885 cluster # 885 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_885#0 length = 593 sequences # 1

consensus_885#1 length = 496 sequences # 1
consensus_885#2 length = 257 sequences # 1

consensusID : consensus_885#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 593
fasta sequence

                              [TTTTGTGTAGGGTACGTTAAATTAGTGGTAAAGAAACAGATTTAGTGTAATTATACCATGCGAACGCTTTTCTGACCCGCTTGCAATTTTGCATTTTGGTGGTGGTGAACGAAACATAAAACTGTTATTAGGTGAGATCTGAGTCATTCAATAGTTAGTACACAGTGGACCTGACATTCATTTATATCTACAAATATGTTCATTTGGGATTGGTTTGCAGGAGTTTTAAATTATCTTGGTCTTTGGAAAAAGAGTGGTAAACTCTTATTTCTTGGTTTAGATAATGCAGGCAAGACTACATTACTTCATATGCTCAAAGATGATCGACTAGCTCAACATGTGCCTACATTGCATCCAACTTCAGAAGAACTTTCCATTGGAAATATGAGGTTCACAACATTTGATCTCGGAGGACATCCCCAAGATACATTACAGCTCGAAGAGTTTGGAAAGATTATTTTCCTGCAGTGGATGCAATAGTATTCCTTGTTGATGCAAGTGATAGATCACGATTACCAGAATCAAAAGCTGAATTTGATGCACTTTTAACTGATGAACAACTTAGTTCATGTCCAGTTTTAGTGCTAGGTAAT]

[+] EMBL BI503485             [TTTTGTGTAGGGTACGTTAAATTAGTGGTAAAGAAACAGATTTAGTGTAATTATACCATGCGAACGCTTTTCTGACCCGCTTGCAATTTTGCATTTTGGTGGTGGTGAACGAAACATAAAACTGTTATTAGGTGAGATCTGAGTCATTCAATAGTTAGTACACAGTGGACCTGACATTCATTTATATCTACAAATATGTTCATTTGGGATTGGTTTGCAGGAGTTTTAAATTATCTTGGTCTTTGGAAAAAGAGTGGTAAACTCTTATTTCTTGGTTTAGATAATGCAGGCAAGACTACATTACTTCATATGCTCAAAGATGATCGACTAGCTCAACATGTGCCTACATTGCATCCAACTTCAGAAGAACTTTCCATTGGAAATATGAGGTTCACAACATTTGATCTCGGAGGACATCCCCAAGATACATTACAGCTCGAAGAGTTTGGAAAGATTATTTTCCTGCAGTGGATGCAATAGTATTCCTTGTTGATGCAAGTGATAGATCACGATTACCAGAATCAAAAGCTGAATTTGATGCACTTTTAACTGATGAACAACTTAGTTCATGTCCAGTTTTAGTGCTAGGTAAT]




>consensus_885#0
TTTTGTGTAGGGTACGTTAAATTAGTGGTAAAGAAACAGATTTAGTGTAATTATACCATG
CGAACGCTTTTCTGACCCGCTTGCAATTTTGCATTTTGGTGGTGGTGAACGAAACATAAA
ACTGTTATTAGGTGAGATCTGAGTCATTCAATAGTTAGTACACAGTGGACCTGACATTCA
TTTATATCTACAAATATGTTCATTTGGGATTGGTTTGCAGGAGTTTTAAATTATCTTGGT
CTTTGGAAAAAGAGTGGTAAACTCTTATTTCTTGGTTTAGATAATGCAGGCAAGACTACA
TTACTTCATATGCTCAAAGATGATCGACTAGCTCAACATGTGCCTACATTGCATCCAACT
TCAGAAGAACTTTCCATTGGAAATATGAGGTTCACAACATTTGATCTCGGAGGACATCCC
CAAGATACATTACAGCTCGAAGAGTTTGGAAAGATTATTTTCCTGCAGTGGATGCAATAG
TATTCCTTGTTGATGCAAGTGATAGATCACGATTACCAGAATCAAAAGCTGAATTTGATG
CACTTTTAACTGATGAACAACTTAGTTCATGTCCAGTTTTAGTGCTAGGTAAT

consensusID : consensus_885#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 496
fasta sequence

                              [TTTAGTGTAATTATACCATGCGAACGCTTTTCTGACCCGCTTGCAATTTTGCATTTTGGTGGTGGTGAACGAAACATAAAACTGTTATTAGGTGAGATCTGAGTCATTCAATAGTTAGTACACAGTGGACCTGACATTCATTTATATCTACAAATATGTTCATTTGGGATTGGTTTGCAGGAGTTTTAAATTATCTTGGTCTTTGGAAAAAGAGTGGTAAACTCTTATTTCTTGGTTTAGATAATGCAGGCAAGACTACATTACTTCATATGCTCAAAGATGATCGACTAGCTCAACATGTGCCTACATTGCATCCAACTTCAGAAGAACTTTCCATTGGAAATATGANNNTCACAACATTTGATCTCGGAGNACATCCCCAAGCTCGAAGAGTTTGGAAAGATTATTTTCCTGCAGTGGATGCAATAGTATTCCTTGTTGATGCAAGTGATAGATCACGATTACCAGAATCAAAAGCTGAATTTGATGCACTTTT]

[+] EMBL BI506204             [TTTAGTGTAATTATACCATGCGAACGCTTTTCTGACCCGCTTGCAATTTTGCATTTTGGTGGTGGTGAACGAAACATAAAACTGTTATTAGGTGAGATCTGAGTCATTCAATAGTTAGTACACAGTGGACCTGACATTCATTTATATCTACAAATATGTTCATTTGGGATTGGTTTGCAGGAGTTTTAAATTATCTTGGTCTTTGGAAAAAGAGTGGTAAACTCTTATTTCTTGGTTTAGATAATGCAGGCAAGACTACATTACTTCATATGCTCAAAGATGATCGACTAGCTCAACATGTGCCTACATTGCATCCAACTTCAGAAGAACTTTCCATTGGAAATATGANNNTCACAACATTTGATCTCGGAGNACATCCCCAAGCTCGAAGAGTTTGGAAAGATTATTTTCCTGCAGTGGATGCAATAGTATTCCTTGTTGATGCAAGTGATAGATCACGATTACCAGAATCAAAAGCTGAATTTGATGCACTTTT]




>consensus_885#1
TTTAGTGTAATTATACCATGCGAACGCTTTTCTGACCCGCTTGCAATTTTGCATTTTGGT
GGTGGTGAACGAAACATAAAACTGTTATTAGGTGAGATCTGAGTCATTCAATAGTTAGTA
CACAGTGGACCTGACATTCATTTATATCTACAAATATGTTCATTTGGGATTGGTTTGCAG
GAGTTTTAAATTATCTTGGTCTTTGGAAAAAGAGTGGTAAACTCTTATTTCTTGGTTTAG
ATAATGCAGGCAAGACTACATTACTTCATATGCTCAAAGATGATCGACTAGCTCAACATG
TGCCTACATTGCATCCAACTTCAGAAGAACTTTCCATTGGAAATATGANNNTCACAACAT
TTGATCTCGGAGNACATCCCCAAGCTCGAAGAGTTTGGAAAGATTATTTTCCTGCAGTGG
ATGCAATAGTATTCCTTGTTGATGCAAGTGATAGATCACGATTACCAGAATCAAAAGCTG
AATTTGATGCACTTTT

consensusID : consensus_885#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 257
fasta sequence

                              [GGAGCGGCGTTGCTTTTTTTTGTAGATATAAATGAATGTCAGGTCCACTGTGTACTAACTATTGAATGACTCCTACACATATGTTCATTTGGGATTGGTTTGCAGGAGTTTTAAATTATCTTGGTCTTTGGAAAAAGAGTGGTAAACTCTTATTTCTTGGTTTAGATAATGCAGGCAAGACTACATTACTTCATATGCTCAAAGATGATCGACTAGCTCAACATGTGCCTACATTGCATCCAACTTCAGAAGAACTT]

[+] EMBL BI511943             [GGAGCGGCGTTGCTTTTTTTTGTAGATATAAATGAATGTCAGGTCCACTGTGTACTAACTATTGAATGACTCCTACACATATGTTCATTTGGGATTGGTTTGCAGGAGTTTTAAATTATCTTGGTCTTTGGAAAAAGAGTGGTAAACTCTTATTTCTTGGTTTAGATAATGCAGGCAAGACTACATTACTTCATATGCTCAAAGATGATCGACTAGCTCAACATGTGCCTACATTGCATCCAACTTCAGAAGAACTT]




>consensus_885#2
GGAGCGGCGTTGCTTTTTTTTGTAGATATAAATGAATGTCAGGTCCACTGTGTACTAACT
ATTGAATGACTCCTACACATATGTTCATTTGGGATTGGTTTGCAGGAGTTTTAAATTATC
TTGGTCTTTGGAAAAAGAGTGGTAAACTCTTATTTCTTGGTTTAGATAATGCAGGCAAGA
CTACATTACTTCATATGCTCAAAGATGATCGACTAGCTCAACATGTGCCTACATTGCATC
CAACTTCAGAAGAACTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_885#0      TTTTGTGTAGGGTACGTTAAATTAGTGGTAAAGAAACAGATTTAGTGTAATTATACCATG 60
consensus_885#1      ----------------------------------------TTTAGTGTAATTATACCATG 20
consensus_885#2      ------------------------------------------------------------
                                                                                 

consensus_885#0      CGAACGCTTTTCTGACCCGCTTGCAATTTTGCATTTTGGTGGTGGTGAACGAAACATAAA 120
consensus_885#1      CGAACGCTTTTCTGACCCGCTTGCAATTTTGCATTTTGGTGGTGGTGAACGAAACATAAA 80
consensus_885#2      ----------------------------------------------------GGAGCGGC 8
                                                                                 

consensus_885#0      ACTGTTATTAGGTG-AGATCTGAGTCATTCAATAGTTAGTACACAGTGGACCTGACATTC 179
consensus_885#1      ACTGTTATTAGGTG-AGATCTGAGTCATTCAATAGTTAGTACACAGTGGACCTGACATTC 139
consensus_885#2      GTTGCTTTTTTTTGTAGATATAAAT----GAATGTCAGGTCCACTGTGTACTAACTATTG 64
                       ** * **   ** **** * * *     ***     ** *** *** **     *** 

consensus_885#0      ATTTATATCTACAAATATGTTCATTTGGGATTGGTTTGCAGGAGTTTTAAATTATCTTGG 239
consensus_885#1      ATTTATATCTACAAATATGTTCATTTGGGATTGGTTTGCAGGAGTTTTAAATTATCTTGG 199
consensus_885#2      AATGACTCCTACACATATGTTCATTTGGGATTGGTTTGCAGGAGTTTTAAATTATCTTGG 124
                     * * *   ***** **********************************************

consensus_885#0      TCTTTGGAAAAAGAGTGGTAAACTCTTATTTCTTGGTTTAGATAATGCAGGCAAGACTAC 299
consensus_885#1      TCTTTGGAAAAAGAGTGGTAAACTCTTATTTCTTGGTTTAGATAATGCAGGCAAGACTAC 259
consensus_885#2      TCTTTGGAAAAAGAGTGGTAAACTCTTATTTCTTGGTTTAGATAATGCAGGCAAGACTAC 184
                     ************************************************************

consensus_885#0      ATTACTTCATATGCTCAAAGATGATCGACTAGCTCAACATGTGCCTACATTGCATCCAAC 359
consensus_885#1      ATTACTTCATATGCTCAAAGATGATCGACTAGCTCAACATGTGCCTACATTGCATCCAAC 319
consensus_885#2      ATTACTTCATATGCTCAAAGATGATCGACTAGCTCAACATGTGCCTACATTGCATCCAAC 244
                     ************************************************************

consensus_885#0      TTCAGAAGAACTTTCCATTGGAAATATGAGGTTCACAACATTTGATCTCGGAGGACATCC 419
consensus_885#1      TTCAGAAGAACTTTCCATTGGAAATATGANNNTCACAACATTTGATCTCGGAGNACATCC 379
consensus_885#2      TTCAGAAGAACTT----------------------------------------------- 257
                     *************                                               

consensus_885#0      CCAAGATACATTACAGCTCGAAGAGTTTGGAAAGATTATTTTCCTGCAGTGGATGCAATA 479
consensus_885#1      CCAAG-----------CTCGAAGAGTTTGGAAAGATTATTTTCCTGCAGTGGATGCAATA 428
consensus_885#2      ------------------------------------------------------------
                                                                                 

consensus_885#0      GTATTCCTTGTTGATGCAAGTGATAGATCACGATTACCAGAATCAAAAGCTGAATTTGAT 539
consensus_885#1      GTATTCCTTGTTGATGCAAGTGATAGATCACGATTACCAGAATCAAAAGCTGAATTTGAT 488
consensus_885#2      ------------------------------------------------------------
                                                                                 

consensus_885#0      GCACTTTTAACTGATGAACAACTTAGTTCATGTCCAGTTTTAGTGCTAGGTAAT 593
consensus_885#1      GCACTTTT---------------------------------------------- 496
consensus_885#2      ------------------------------------------------------

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)