cluster # 914

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Apis mellifera
cluster # 914 cluster # 914 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_914#0 length = 540 sequences # 2

consensus_914#1 length = 442 sequences # 1

consensusID : consensus_914#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 540
fasta sequence

                              [AAATGTTTCTAAAGATTTTAATATAAGTAGAAATGAACAAGATGAATATGCAGTTAAATCTCAGAAAAAAGCAGAAGCTGCAATTACTGAAGGTTATTTTAAAAAAGAAATCATTCCTGTAACATTATCTACTGAAAAAGAATCTGTTATCATGGATAAAGATGAATATCCTAAGTTTGGAACAACTTTTGAAGATCTTCAAAAATTAAAACCAGCTTTTCTGAAAAATGAAGGTACAGTTACAGCTGGGAATGCTTCTGGTATCAATGATGGAGCAGCAGCAGTAGTTCTTATGTCAGCAGACATTGCTAAACAAAAAGGACTTTCTCCATTAGCTAAAATTGTTGCAATGGCTCAAGTTGGCGTGGAACCANGAATTATGGGTATAGGTCCTATACCAGCAGTTGAACTAGTATTACAAAAAGCAAAATGGACAAAAGAAGAAGTAGATTTATATGAATTAAATGAAGCTTTTGCAGCCCAATCAATAGCATGTGTAAAATCTCTTGGTCTAAATCCAGACAAAGTTAATATAAATGG]

[+] EMBL BI506530             [AAATGTTTCTAAAGATTTTAATATAAGTAGAAATGAACAAGATGAATATGCAGTTAAATCTCAGAAAAAAGCAGAAGCTGCAATTACTGAAGGTTATTTTAAAAAAGAAATCATTCCTGTAACATTATCTACTGAAAAAGAATCTGTTATCATGGATAAAGATGAATATCCTAAGTTTGGAACAACTTTTGAAGATCTTCAAAAATTAAAACCAGCTTTTCTGAAAAATGAAGGTACAGTTACAGCTGGGAATGCTTCTGGTATCAATGATGGAGCAGCAGCAGTAGTTCTTATGTCAGCAGACATTGCTAAACAAAAAGGACTTTCTCCATTAGCTAAAATTGTTGCAATGGCTCAAGTTGGCGTGGAACCAAGAATTATGGGTATAGGTCCTATACCAGCAGTTGAACTAGTATTACAAAAAGCAAAATGGACAAAAGAAGAAGTAGATTTATATGAATTAAATGAAGCTTTTGCAGCCCAATCAATAGCATGTGTAAAATCTCTTGGTCTAAATCCAGACAAAGTTAATATAAATGG]
[+] EMBL BI514324             [         TAAAGATTTTAATATAAGTAGAAATGAACAAGATGAATATGCAGTTAAATCTCAGAAAAAAGCAGAAGCTGCAATTACTGAAGGTTATTTTAAAAAAGAAATCATTCCTGTAACATTATCTACTGAAAAAGAATCTGTTATCATGGATAAAGATGAATATCCTAAGTTTGGAACAACTTTTGAAGATCTTCAAAAATTAAAACCAGCTTTTCTGAAAAATGAAGGTACAGTTACAGCTGGGAATGCTTCTGGTATCAATGATGGAGCAGCAGCAGTAGTTCTTATGTCAGCAGACATTGCTAAACAAAAAGGACTTTCTCCATTAGCTAAAATTGTTGCAATGGCTCAAGTTGGCGTGGAACCANGAATTATGGGTATAGGTCCTATACCAGCAGTTGAACTAGTATTACAAAAAGCAAAATGGACAAAAGAAGAAGTAGATTTATATGAATTAAATGAAGCTTTTGCAGCCCAATCAATAGC                                                ]




>consensus_914#0
AAATGTTTCTAAAGATTTTAATATAAGTAGAAATGAACAAGATGAATATGCAGTTAAATC
TCAGAAAAAAGCAGAAGCTGCAATTACTGAAGGTTATTTTAAAAAAGAAATCATTCCTGT
AACATTATCTACTGAAAAAGAATCTGTTATCATGGATAAAGATGAATATCCTAAGTTTGG
AACAACTTTTGAAGATCTTCAAAAATTAAAACCAGCTTTTCTGAAAAATGAAGGTACAGT
TACAGCTGGGAATGCTTCTGGTATCAATGATGGAGCAGCAGCAGTAGTTCTTATGTCAGC
AGACATTGCTAAACAAAAAGGACTTTCTCCATTAGCTAAAATTGTTGCAATGGCTCAAGT
TGGCGTGGAACCANGAATTATGGGTATAGGTCCTATACCAGCAGTTGAACTAGTATTACA
AAAAGCAAAATGGACAAAAGAAGAAGTAGATTTATATGAATTAAATGAAGCTTTTGCAGC
CCAATCAATAGCATGTGTAAAATCTCTTGGTCTAAATCCAGACAAAGTTAATATAAATGG

consensusID : consensus_914#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 442
fasta sequence

                              [TAAGAGCACATCTTAAACCTGTGGATGTTTCTGAAGTTGTATTTGGACAGGTATTAATTGCTGCTCAAGGACAAAATCCAGCAAGACAAGCAGCAATGAAAGCTGGAATTCCTATAGCTACACCTGCTTATTTAATTAATATGTTATGTGGCTCAGGGTTAAAAGCAATAATGGAAGGATATATGTCCATAAAAGCTGGTGAAAATCAAGTAGTTGTAGCTGGTGGTCAAGAAAGTATGAGTCAATCTGTACATGCAATACAATTTAGAAATGGTGTAAAAATAGGAGATAGTCGTCTAATAGACACTTTAATATTTGATGGTTTAACAGATGCATTTCATGGAATTCATATGGGAATAACAGCTGAAAATGTTTCTAAAGATTTTAATATAAGTAGAAATGAACAAGATGAATATGCAGTTAAATCTCAGAAAAAAGCAGA]

[+] EMBL BI515730             [TAAGAGCACATCTTAAACCTGTGGATGTTTCTGAAGTTGTATTTGGACAGGTATTAATTGCTGCTCAAGGACAAAATCCAGCAAGACAAGCAGCAATGAAAGCTGGAATTCCTATAGCTACACCTGCTTATTTAATTAATATGTTATGTGGCTCAGGGTTAAAAGCAATAATGGAAGGATATATGTCCATAAAAGCTGGTGAAAATCAAGTAGTTGTAGCTGGTGGTCAAGAAAGTATGAGTCAATCTGTACATGCAATACAATTTAGAAATGGTGTAAAAATAGGAGATAGTCGTCTAATAGACACTTTAATATTTGATGGTTTAACAGATGCATTTCATGGAATTCATATGGGAATAACAGCTGAAAATGTTTCTAAAGATTTTAATATAAGTAGAAATGAACAAGATGAATATGCAGTTAAATCTCAGAAAAAAGCAGA]




>consensus_914#1
TAAGAGCACATCTTAAACCTGTGGATGTTTCTGAAGTTGTATTTGGACAGGTATTAATTG
CTGCTCAAGGACAAAATCCAGCAAGACAAGCAGCAATGAAAGCTGGAATTCCTATAGCTA
CACCTGCTTATTTAATTAATATGTTATGTGGCTCAGGGTTAAAAGCAATAATGGAAGGAT
ATATGTCCATAAAAGCTGGTGAAAATCAAGTAGTTGTAGCTGGTGGTCAAGAAAGTATGA
GTCAATCTGTACATGCAATACAATTTAGAAATGGTGTAAAAATAGGAGATAGTCGTCTAA
TAGACACTTTAATATTTGATGGTTTAACAGATGCATTTCATGGAATTCATATGGGAATAA
CAGCTGAAAATGTTTCTAAAGATTTTAATATAAGTAGAAATGAACAAGATGAATATGCAG
TTAAATCTCAGAAAAAAGCAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_914#0      ---AAATGTTTCTAAAGATTTTA-ATATAAGTAGAAATGAACAAGATGAATATGCAGTTA 56
consensus_914#1      TAAGAGCACATCTTAAACCTGTGGATGTTTCTGAAGTTGTAT---TTGGACAGGTA-TTA 56
                         *     *** **   * *  ** *   *  *  ** *     ** * * * * ***

consensus_914#0      AATCTCAGAAAAAAGCAGAAGCTGCAATTACTGAAGGTTATTTTAAAAAAGAAATCATTC 116
consensus_914#1      ATTGCTGCTCAAGGACAAAATCCAGCAAGACAAGCAGCAAT-----GAAAGCTGGAATTC 111
                     * *       **   ** ** *    *  **     *  **      ****     ****

consensus_914#0      CTGTAACATTATCTACTGAA--AAAGAATCTGTTATCATGGATAAAGATGAATATCCTAA 174
consensus_914#1      CTATAGCTACACCTGCTTATTTAATTAATATGTTAT-GTGGCTCAGGGTTAAAAGC--AA 168
                     ** ** *   * ** ** *   **  *** ******  *** * * * * ** * *  **

consensus_914#0      GTTTGGAACAACTTTTG-----AAGATCTTCAAAAATTAAAACCAGCTTTTCTGAAAA-- 227
consensus_914#1      TAATGGAAGGATATATGTCCATAAAAGCTGGTGAAAATCAAGTAGTTGTAGCTGGTGGTC 228
                        *****  *  * **     ** * **    *** * **       *  ***      

consensus_914#0      ATGAAGGTACAGTTACAGCTGGGAATGCTTCTGGTATCAATGATGGAGCAGCAGCAGTAG 287
consensus_914#1      AAGAAAGTATGAGTCAATCTGTACATGCAATACAATTTAGAAATGGTGTAAAAATAGGAG 288
                     * *** ***    *  * ***   ****        * *   **** * *  *  ** **

consensus_914#0      TTCTTATGTCAGCAGACATTGCTAAACAAAAAGGACTTTCTCCATTAGCTAAAATTGTTG 347
consensus_914#1      ATAGTCGTCTAATAGACACTTTAATATTTGATGG------TTTAACAGATGCATTTCATG 342
                      *  *     *  ***** *   * *    * **      *  *  ** *  * **  **

consensus_914#0      CAATGGCTCAAGTTGGCGTGGAACCANGAATTATGGGTATAGGTCCTA-TACCAGCAGT- 405
consensus_914#1      GAAT---TCATATGGGAATAACAGCTGAAAATGTTTCTAAAGATTTTAATATAAGTAGAA 399
                      ***   ***  * **  *   * *   ** * *   ** ** *  ** **  ** **  

consensus_914#0      -TGAACTAGTATTACAAAAAGCAAAATGGACAAAAGAAGAAGTAGATTTATATGAATTAA 464
consensus_914#1      ATGAACAAGATGAATATGCAGTTAAAT---CTCAGAAAAAAGCAGA-------------- 442
                      ***** **    * *   **  ****   *  *  ** *** ***              

consensus_914#0      ATGAAGCTTTTGCAGCCCAATCAATAGCATGTGTAAAATCTCTTGGTCTAAATCCAGACA 524
consensus_914#1      ------------------------------------------------------------
                                                                                 

consensus_914#0      AAGTTAATATAAATGG 540
consensus_914#1      ----------------

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)