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Apis mellifera
cluster # 928 cluster # 928       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_928#0 length = 587 sequences # 2  
 consensus_928#1 length = 357 sequences # 1  
consensusID : consensus_928#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 587
fasta sequence 
                              [AAAAGTTAACCTTCATTGTGTAAAAGGAATTAATTTACCATGCAGCAATATAACGTAACTTTTAAATATTAATACGTACGTATGATAACCCCCAAATTGATAATACGATGGCTACAGGAAAACGAAGAGGCATGCATTCATCATCCGGTAGCTCCGCGATGTTCGGATCATCGGCTAGTAATTTAAGGTCGAGTCGTCTAAATTTTCGTCCAAATTCAAGCCAAGAAGACAGAGGCGGAACTCGACCAACAGCTGCTCCAAGCTCCATAGGTCTCATACTTGTAACGATGTTTTTACATGTTTGTAAAAAATCTCTACTCTTTGATACAAGACTCAAAGTTACTATATATTNTGGTNCGATATTTGTAGTATCACTAATAGCAGATTTTATCGCTATGCCAAGAACTTATTTTTCACGTTCAGATAACGCNNTTAATCAATATTTTGTGAAATGGGGATGGGGATGGTTATTGAGTGTAACTGTTCCATGGGTTGCATTAACTGCACATACAATTGGCTGTGGTCGTAGATCAATTCTATTAAAACATCTTGCTAGATTGGGATTAGCTACAATTGCGTGGATATTA]

[+] EMBL BI503279             [AAAAGTTAACCTTCATTGTGTAAAAGGAATTAATTTACCATGCAGCAATATAACGTAACTTTTAAATATTAATACGTACGTATGATAACCCCCAAATTGATAATACGATGGCTACAGGAAAACGAAGAGGCATGCATTCATCATCCGGTAGCTCCGCGATGTTCGGATCATCGGCTAGTAATTTAAGGTCGAGTCGTCTAAATTTTCGTCCAAATTCAAGCCAAGAAGACAGAGGCGGAACTCGACCAACAGCTGCTCCAAGCTCCATAGGTCTCATACTTGTAACGATGTTTTTACATGTTTGTAAAAAATCTCTACTCTTTGATACAAGACTCAAAGTTACTATATATTGTGGTGCGATATTTGTAGTATCACTAATAGCAGATTTTATCGCTATGCCAAGAACTTATTTTTCACGTTCAGATAACGCTCTTAATCAATATTTTGTGAAATGGGGATGGGGATGGTTATTGAGTGTAACTGTTCCATGGGTTGCATTAACTGCACATACAATTGGCTGTGGTCGTAGATCAATTCTATTAAAACATCTTGCTAGATTGGGATTAGCTACAATTGCGTGGATATTA]
[+] EMBL BI508406             [AAAAGTTAACCTTCATTGTGTAAAAGGAATTAATTTACCATGCAGCAATATAACGTAACTTTTAAATATTAATACGTACGTATGATAACCCCCAAATTGATAATACGATGGCTACAGGAAAACGAAGAGGCATGCATTCATCATCCGGTAGCTCCGCGATGTTCGGATCATCGGCTAGTAATTTAAGGTCGAGTCGTCTAAATTTTCGTCCAAATTCAAGCCAAGAAGACAGAGGCGGAACTCGACCAACAGCTGCTCCAAGCTCCATAGGTCTCATACTTGTAACGATGTTTTTACATGTTTGTAAAAAATCTCTACTCTTTGATACAAGACTCAAAGTTACTATATATTNTGGTNCGATATTTGTAGTATCACTAATAGCAGATTTTATCGCTATGCCAAGAACTTATTTTTCACGTTCAGATAACGCNNTTAATCAATATTTTGTGAAATGGGGATGGGGATGGTTATTGAGTGTAACTGTTCCATGGGTTGCATTAACTG                                                                                   ]




>consensus_928#0
AAAAGTTAACCTTCATTGTGTAAAAGGAATTAATTTACCATGCAGCAATATAACGTAACT
TTTAAATATTAATACGTACGTATGATAACCCCCAAATTGATAATACGATGGCTACAGGAA
AACGAAGAGGCATGCATTCATCATCCGGTAGCTCCGCGATGTTCGGATCATCGGCTAGTA
ATTTAAGGTCGAGTCGTCTAAATTTTCGTCCAAATTCAAGCCAAGAAGACAGAGGCGGAA
CTCGACCAACAGCTGCTCCAAGCTCCATAGGTCTCATACTTGTAACGATGTTTTTACATG
TTTGTAAAAAATCTCTACTCTTTGATACAAGACTCAAAGTTACTATATATTNTGGTNCGA
TATTTGTAGTATCACTAATAGCAGATTTTATCGCTATGCCAAGAACTTATTTTTCACGTT
CAGATAACGCNNTTAATCAATATTTTGTGAAATGGGGATGGGGATGGTTATTGAGTGTAA
CTGTTCCATGGGTTGCATTAACTGCACATACAATTGGCTGTGGTCGTAGATCAATTCTAT
TAAAACATCTTGCTAGATTGGGATTAGCTACAATTGCGTGGATATTA

consensusID : consensus_928#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 357
fasta sequence 
                              [TAAAAGGAATTAATTTACCATGCAGCAATATAACGAAAACGAAGAGGCATGCATTCATCATCCGGTAGCTCCGCGATGTTCGGATCATCGGCTAGTAATTTAAGGTCGAGTCGTCTAAATTTTCGTCCAAATTCAAGCCAAGAAGACAGAGGCGGAACTCGACCAACAGCTGCTCCAAGCTCCATAGGTCTCATACTTGTAACGATGTTTTTACATGTTTGTAAAAAATCTCTACTCTTTGATACAAGACTCAAAGTTACTATATATTGTGGTGCGATATTTGTAGTATCACTAATAGCAGATTTTATCGCTATGCCAAGAACTTATTTTTCACGTTCAGATAACGCTCTTAATCAA]

[+] EMBL BI506966             [TAAAAGGAATTAATTTACCATGCAGCAATATAACGAAAACGAAGAGGCATGCATTCATCATCCGGTAGCTCCGCGATGTTCGGATCATCGGCTAGTAATTTAAGGTCGAGTCGTCTAAATTTTCGTCCAAATTCAAGCCAAGAAGACAGAGGCGGAACTCGACCAACAGCTGCTCCAAGCTCCATAGGTCTCATACTTGTAACGATGTTTTTACATGTTTGTAAAAAATCTCTACTCTTTGATACAAGACTCAAAGTTACTATATATTGTGGTGCGATATTTGTAGTATCACTAATAGCAGATTTTATCGCTATGCCAAGAACTTATTTTTCACGTTCAGATAACGCTCTTAATCAA]




>consensus_928#1
TAAAAGGAATTAATTTACCATGCAGCAATATAACGAAAACGAAGAGGCATGCATTCATCA
TCCGGTAGCTCCGCGATGTTCGGATCATCGGCTAGTAATTTAAGGTCGAGTCGTCTAAAT
TTTCGTCCAAATTCAAGCCAAGAAGACAGAGGCGGAACTCGACCAACAGCTGCTCCAAGC
TCCATAGGTCTCATACTTGTAACGATGTTTTTACATGTTTGTAAAAAATCTCTACTCTTT
GATACAAGACTCAAAGTTACTATATATTGTGGTGCGATATTTGTAGTATCACTAATAGCA
GATTTTATCGCTATGCCAAGAACTTATTTTTCACGTTCAGATAACGCTCTTAATCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_928#0      AAAAGTTAACCTTCATTGTGTAAAAGGAATTAATTTACCATGCAGCAATATAACGTAACT 60
consensus_928#1      ------------------------------------------------------------
                                                                                 

consensus_928#0      TTTAAATATTAATACGTACGTATGATAACCCCCAAATTGATAATACGATGGCTACAGGAA 120
consensus_928#1      -----------------------TAAAAGGAATTAATTTACCATGCAGCAATATAACGAA 37
                                             * **      **** *  ** *         * ***

consensus_928#0      AACGAAGAGGCATGCATTCATCATCCGGTAGCTCCGCGATGTTCGGATCATCGGCTAGTA 180
consensus_928#1      AACGAAGAGGCATGCATTCATCATCCGGTAGCTCCGCGATGTTCGGATCATCGGCTAGTA 97
                     ************************************************************

consensus_928#0      ATTTAAGGTCGAGTCGTCTAAATTTTCGTCCAAATTCAAGCCAAGAAGACAGAGGCGGAA 240
consensus_928#1      ATTTAAGGTCGAGTCGTCTAAATTTTCGTCCAAATTCAAGCCAAGAAGACAGAGGCGGAA 157
                     ************************************************************

consensus_928#0      CTCGACCAACAGCTGCTCCAAGCTCCATAGGTCTCATACTTGTAACGATGTTTTTACATG 300
consensus_928#1      CTCGACCAACAGCTGCTCCAAGCTCCATAGGTCTCATACTTGTAACGATGTTTTTACATG 217
                     ************************************************************

consensus_928#0      TTTGTAAAAAATCTCTACTCTTTGATACAAGACTCAAAGTTACTATATATTNTGGTNCGA 360
consensus_928#1      TTTGTAAAAAATCTCTACTCTTTGATACAAGACTCAAAGTTACTATATATTGTGGTGCGA 277
                     *************************************************** **** ***

consensus_928#0      TATTTGTAGTATCACTAATAGCAGATTTTATCGCTATGCCAAGAACTTATTTTTCACGTT 420
consensus_928#1      TATTTGTAGTATCACTAATAGCAGATTTTATCGCTATGCCAAGAACTTATTTTTCACGTT 337
                     ************************************************************

consensus_928#0      CAGATAACGCNNTTAATCAATATTTTGTGAAATGGGGATGGGGATGGTTATTGAGTGTAA 480
consensus_928#1      CAGATAACGCTCTTAATCAA---------------------------------------- 357
                     **********  ********                                        

consensus_928#0      CTGTTCCATGGGTTGCATTAACTGCACATACAATTGGCTGTGGTCGTAGATCAATTCTAT 540
consensus_928#1      ------------------------------------------------------------
                                                                                 

consensus_928#0      TAAAACATCTTGCTAGATTGGGATTAGCTACAATTGCGTGGATATTA 587
consensus_928#1      -----------------------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)