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Apis mellifera
cluster # 937 cluster # 937       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_937#0 length = 600 sequences # 1  
 consensus_937#1 length = 582 sequences # 2  
consensusID : consensus_937#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 600
fasta sequence 
                              [TGATAAAGGGCTGAGGGAGAAACCGCAGGAGAAACCGTTTCCCACTGCTGAAGTCATCGAGCTTAGACGACTCGCTGACGAGTACAAGCATCGCGACTGGGGTTGCGGTCTGGCAGCCGAGGACGAGGCTTCGCTGTGGAAACGGGTCTCCAGTAACCACGCTCTCAACGCGCTGTCCCTTGCCAGGTCAGTAACGAAGGAAGAGAAAGAAAAAGAGAACACGAGAAAAGTTGCTCCGGTTACTGCCGCGATGACCATGCCTCCCGCGGGTCGGCCATCTTCGGTTCAAGCTAGACCCATTCATGGAATTTTGCAGGATGATTCTAAAGCGGATACGGAAAGAGCTATTGCTCGCGCAAGAAAAGATTTCTTGATCCGCCATCATCTGGATCGTACTACTGGCGTGGGCGATGGTGCACTGCTTCCCTCTCCAACGAGAGAAAAGTTGGAGCCCGTGATACCACGACGTCGAGAGGAGACGAAAGAGCACCGCGAAGAAATTCAGCCTAAAACGAAATCCAGCCCTAAGAACAGTCCAAGAACCGGTCGTTCGCAGAGTCTTGGTCCAACTGTGACTGAACGTCGATCACCTAAACGTCA]

[+] EMBL BI509807             [TGATAAAGGGCTGAGGGAGAAACCGCAGGAGAAACCGTTTCCCACTGCTGAAGTCATCGAGCTTAGACGACTCGCTGACGAGTACAAGCATCGCGACTGGGGTTGCGGTCTGGCAGCCGAGGACGAGGCTTCGCTGTGGAAACGGGTCTCCAGTAACCACGCTCTCAACGCGCTGTCCCTTGCCAGGTCAGTAACGAAGGAAGAGAAAGAAAAAGAGAACACGAGAAAAGTTGCTCCGGTTACTGCCGCGATGACCATGCCTCCCGCGGGTCGGCCATCTTCGGTTCAAGCTAGACCCATTCATGGAATTTTGCAGGATGATTCTAAAGCGGATACGGAAAGAGCTATTGCTCGCGCAAGAAAAGATTTCTTGATCCGCCATCATCTGGATCGTACTACTGGCGTGGGCGATGGTGCACTGCTTCCCTCTCCAACGAGAGAAAAGTTGGAGCCCGTGATACCACGACGTCGAGAGGAGACGAAAGAGCACCGCGAAGAAATTCAGCCTAAAACGAAATCCAGCCCTAAGAACAGTCCAAGAACCGGTCGTTCGCAGAGTCTTGGTCCAACTGTGACTGAACGTCGATCACCTAAACGTCA]




>consensus_937#0
TGATAAAGGGCTGAGGGAGAAACCGCAGGAGAAACCGTTTCCCACTGCTGAAGTCATCGA
GCTTAGACGACTCGCTGACGAGTACAAGCATCGCGACTGGGGTTGCGGTCTGGCAGCCGA
GGACGAGGCTTCGCTGTGGAAACGGGTCTCCAGTAACCACGCTCTCAACGCGCTGTCCCT
TGCCAGGTCAGTAACGAAGGAAGAGAAAGAAAAAGAGAACACGAGAAAAGTTGCTCCGGT
TACTGCCGCGATGACCATGCCTCCCGCGGGTCGGCCATCTTCGGTTCAAGCTAGACCCAT
TCATGGAATTTTGCAGGATGATTCTAAAGCGGATACGGAAAGAGCTATTGCTCGCGCAAG
AAAAGATTTCTTGATCCGCCATCATCTGGATCGTACTACTGGCGTGGGCGATGGTGCACT
GCTTCCCTCTCCAACGAGAGAAAAGTTGGAGCCCGTGATACCACGACGTCGAGAGGAGAC
GAAAGAGCACCGCGAAGAAATTCAGCCTAAAACGAAATCCAGCCCTAAGAACAGTCCAAG
AACCGGTCGTTCGCAGAGTCTTGGTCCAACTGTGACTGAACGTCGATCACCTAAACGTCA

consensusID : consensus_937#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 582
fasta sequence 
                              [GGAGAAACCGCAGGAGAAACCGTTTCCCACTGCTGNAGTCATCGAGCTTAGACGACTCGCTGACGAGTACAAGCATCGCGACTGGGGTTGCGGTCTNNNAGCCGAGGACGAGGCTTCGCTGTGGAAACGGGTCTCCAGTAACCACGCTCTCAACGCGCTGTCCCTTGCCAGGCCAGTACACTATTCCACTCTCAAACGTCATTTTCAATGTCGCTACTGACGATCGAAATCGACAGTAAGAGATGTTAGTTTAACCCGATTAATAGAAAACGTAACGAAACGGTCACTGGTTCTACGGGAAAAGTATATATAACGAATGAATTGACTAAGGAATAAAACGTCGTTAGAAATAATCGTAACTGTTTGATGTCAAACACGACTGTACATAACATGGCATACGATTACTTTATTCGTCGACTACACGATTTAATCGATCATTTTTCATGTTTACACAAGTAATATAGGAACTCGTATCAACGTGTAACGGAACACGTTTAAATTCTGCTGTGCGTGTCATGACAAAAAGAAAAAAACGACGTCGATGAATTAATTAATTAGACAATTAGATAATTTCATTTATTA]

[-] EMBL BI505595             [GGAGAAACCGCAGGAGAAACCGTTTCCCACTGCTGNAGTCATCGAGCTTAGACGACTCGCTGACGAGTACAAGCATCGCGACTGGGGTTGCGGTCTNNNAGCCGAGGACGAGGCTTCGCTGTGGAAACGGGTCTCCAGTAACCACGCTCTCAACGCGCTGTCCCTTGCCAGGCCAGTACACTATTCCACTCTCAAACGTCATTTTCAATGTCGCTACTGACGATCGAAATCGACAGTAAGAGATGTTAGTTTAACCCGATTAATAGAAAACGTAACGAAACGGTCACTGGTTCTACGGGAAAAGTATATATAACGAATGAATTGACTAAGGAATAAAACGTCGTTAGAAATAATCGTAACTGTTTGATGTCAAACACGACTGTACATAACATGGCATACGATTACTTTATTCGTCGACTACACGATTTAATCGATCATTTTTCATGTTTACACAAGTAATATAGGAACTCGTATCAACGTGTAACGGAACACGTTTAAATTCTGCTGTGCGTGTCATGACAAAAAGAAAAAAACGACGTCGATGAATTAATTAATTAGACAATTAGATAATTTC        ]
[-] EMBL BI506777             [                                                                                                                     GCTGTGGAAACGGGTCTCCAGTAACCACGCTCTCAACGCGCTGTCCCTTGCCAGGCCAGTACACTATTCCACTCTCAAACGTCATTTTCAATGTCGCTACTGACGATCGAAATCGACAGTAAGAGATGTTAGTTTAACCCGATTAATAGAAAACGTAACGAAACGGTCACTGGTTCTACGGGAAAAGTATATATAACGAATGAATTGACTAAGGAATAAAACGTCGTTAGAAATAATCGTAACTGTTTGATGTCAAACACGACTGTACATAACATGGCATACGATTACTTTATTCGTCGACTACACGATTTAATCGATCATTTTTCATGTTTACACAAGTAATATAGGAACTCGTATCAACGTGTAACGGAACACGTTTAAATTCTGCTGTGCGTGTCATGACAAAAAGAAAAAAACGACGTCGATGAATTAATTAATTAGACAATTAGATAATTTCATTTATTA]




>consensus_937#1
GGAGAAACCGCAGGAGAAACCGTTTCCCACTGCTGNAGTCATCGAGCTTAGACGACTCGC
TGACGAGTACAAGCATCGCGACTGGGGTTGCGGTCTNNNAGCCGAGGACGAGGCTTCGCT
GTGGAAACGGGTCTCCAGTAACCACGCTCTCAACGCGCTGTCCCTTGCCAGGCCAGTACA
CTATTCCACTCTCAAACGTCATTTTCAATGTCGCTACTGACGATCGAAATCGACAGTAAG
AGATGTTAGTTTAACCCGATTAATAGAAAACGTAACGAAACGGTCACTGGTTCTACGGGA
AAAGTATATATAACGAATGAATTGACTAAGGAATAAAACGTCGTTAGAAATAATCGTAAC
TGTTTGATGTCAAACACGACTGTACATAACATGGCATACGATTACTTTATTCGTCGACTA
CACGATTTAATCGATCATTTTTCATGTTTACACAAGTAATATAGGAACTCGTATCAACGT
GTAACGGAACACGTTTAAATTCTGCTGTGCGTGTCATGACAAAAAGAAAAAAACGACGTC
GATGAATTAATTAATTAGACAATTAGATAATTTCATTTATTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_937#0      TGATAAAGGGCTGAGGGAGAAACCGCAGGAGAAACCGTTTCCCACTGCTGAAGTCATCGA 60
consensus_937#1      ---------------GGAGAAACCGCAGGAGAAACCGTTTCCCACTGCTGNAGTCATCGA 45
                                    *********************************** *********

consensus_937#0      GCTTAGACGACTCGCTGACGAGTACAAGCATCGCGACTGGGGTTGCGGTCTGGCAGCCGA 120
consensus_937#1      GCTTAGACGACTCGCTGACGAGTACAAGCATCGCGACTGGGGTTGCGGTCTNNNAGCCGA 105
                     ***************************************************   ******

consensus_937#0      GGACGAGGCTTCGCTGTGGAAACGGGTCTCCAGTAACCACGCTCTCAACGCGCTGTCCCT 180
consensus_937#1      GGACGAGGCTTCGCTGTGGAAACGGGTCTCCAGTAACCACGCTCTCAACGCGCTGTCCCT 165
                     ************************************************************

consensus_937#0      TGCCAGGTCAGTAACGAAGGAAGAGAAAGAAAAAGAGAACACGAGAAAAGTTGCTCCGGT 240
consensus_937#1      TGCCAGGCCAGTACACTATT-----CCACTCTCAAACGTCATTTTCAATGTCGCTACTG- 219
                     ******* *****    *         *     * *   **     ** ** *** * * 

consensus_937#0      TACTGCCGCGATGACCATGCCTCCCGCGGGTCGGCCATCTTCGGTTCAAGCTAGACCCAT 300
consensus_937#1      -ACGATCGAAATCGACAG---TAAGAGATGTTAGTTTAACCCGATTAATAGAAAACGTA- 274
                      **   **  **   **    *       **  *       ** ** *    * **  * 

consensus_937#0      TCATGGAATT-TTGCAGGATGATTCTAAAGCGGATACGGAAAGAGCTA-TTGCTCGCGCA 358
consensus_937#1      --ACGAAACGGTCACTGGTTCTACGGGAAAAGTATATATAACGAATGAATTGACTAAGGA 332
                       * * **   *  * ** *       **  * ***   ** **   * ***     * *

consensus_937#0      AGAAAAGATTTCTTGAT----CCGCCATCATCTGGATCGTACTACTGGCGTGGGCGA--T 412
consensus_937#1      ATAAAACGTCGTTAGAAATAATCGTAACTGTTTGATGTCAAACACGACTGTACATAACAT 392
                     * ****  *   * **      **  *   * **      *  **    **     *  *

consensus_937#0      GGTGCACTGCTTCCCTCTCCAACGAGAGAAAAGTTGGAGCCCGTGATACCACGACGTCGA 472
consensus_937#1      GGCATACGATTACTTTATTCGTCGACTACACGATTTAA-TCGATCATTTTTC-ATGTTTA 450
                     **   **   * *  * * *  ***    *   **  *  *  * **    * * **  *

consensus_937#0      GAGGAGACGAAAGAGCACCGCGAAGAAATTCAGCCTAAAACGAAATCCAGCCCTAAGAAC 532
consensus_937#1      CACAAG-TAATATAGGAACTCGTATCAACGTGTAACGGAACACGTTTAAATTCTGCTGTG 509
                      *  **   * * ** * * ** *  **          ***    *  *   **      

consensus_937#0      AGTCCAAGAACCGGTCGTTCGCAGAGTCTTGGTCCAACTG--TGACTGAACG--TCGATC 588
consensus_937#1      CGTGTCATGACAAAAAGAAAAAAACGACGTCGATGAATTAATTAATTAGACAATTAGATA 569
                      **   *  **     *     *  * * * *   ** *   * * *  **   * *** 

consensus_937#0      ACCTAAAC-GTCA 600
consensus_937#1      ATTTCATTTATTA 582
                     *  * *    * *


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)