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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_95#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1066 fasta sequence
[CGTTAAAAAGGTTAAGGTCAATTTATAATTGAGTGAAAAATAGAGAAAAAAGTGACGTGGTTACCGCAGATCGGATCCAACACTGCAGATGAGCGATGTTTAAGCTGTCAGCCAGCCTTAACAGTATTCGCATCTTTACACTTACCTCTTTAGCTTTAAGAGAACGCGTAGAGACAGAGAGCCAGAGATGCTGTCAGCGCTGACGTTGATCCCCCCATCCCCCCTCTTTGTAGCATCAAAATTAGCCCGTAGCAAAGAGAAAACGAACATGTATGGAACGAGAGCGAGCGAGAGAGAAAGAGCGAGCGAGCGAAAGAGAGAGAGAGAAAAGCGAGCGAACGAGAGAGAAAGTGAGAATGAGC----ATATATATATATATATATATATGTACGGAGTACGAAAAGGTTAGAGTCGTGCAGATTTTTTTATGTAGATCAAGAGTGTACCGATACATATAACTACGTATTGTATAC--ATATATATATATATGTAAACTTTTTTCTGAATTTAAGAAATTAACCATATATATATATATCGATATATTGTATAAATATTGTAAAAGATGTCGCCCTCGAGTCGCGCGCATGCGCGATGGTTATGAATCGAGCACAAATAAGAAAGGAAATATATTACGCGTAGCTCCTTTCGATTTCGCTTGTTCGTTTGCTTTTATTATCGATATATATATGCAGGAGGCGTGAAAGGGATGGAATCGATGGGTTGCAAAATTCTTGGACGCTTCGCCGGACGAACGTACTAAGAGAAATTTAAAAGAGAGAATGAGAATGGAAATTTGATGAACGGGAGAATGAATGAATGAGAGAAAGAGAGAGAGAGAACGAGAAATAGAGAGCAAATGCACCGATATTGGTAATAATTATGATTGTTACTCGAGATCGTTAGGCCTATCGTAATTATTTACTTTAACAGAGGAAGGATATACAGAACAATTATAAATAGGTATAAATATATATATATATATAAAGATTATATATATATATGATACAAACATATACATGCATACATGTATGGAACGAGCGCGGTGAGCCCCCTTCTTATGTAGACCTTTAA]
[+] EMBL BI514330 [CGTTAAAAAGGTTAAGGTCAATTTATAATTGAGTGAAAAATAGAGAAAAAAGTGACGTGGTTACCGCAGATCGGATCCAACACTGCAGATGAGCGATGTTTAAGCTGTCAGCCAGCCTTAACAGTATTCGCATCTTTACACTTACCTCTTTAGCTTTAAGAGAACGCGTAGAGACAGAGAGCCAGAGATGCTGTCAGCGCTGACGTTGATCCCCCCATCCCCCCTCTTTGTAGCATCAAAATTAGCCCGTAGCAAAGAGAAAACGAACATGTATGGAACGAGAGCGAGCGAGAGAGAAAGAGCGAGCGAGCGAAAGAGAGAGAGAGAAAAGCGAGCGAACGAGAGAGAAAGTGAGAATGAGC ATATATATATATATATATATATGTACGGAGTACGAAAAGGTTAGAGTCGTGCAGATTTTTTTATGTAGATCAAGAGTGTACCGATACATATAACTACGTATTGTATAC ATATATATATATATGTAAACTTTTTTCTGAATTTAAGAAATTAACCATATATAT ]
[+] EMBL BI514765 [ GCAGATGAGCGATGTTTAAGCTGTCAGCCAGCCTTAACAGTATTCGCATCTTTACACTTACCTCTTTAGCTTTAAGAGAACGCGTAGAGACAGAGAGCCAGAGATGCTGTCAGCGCTGACGTTGATCCCCCCATCCCCCCTCTTTGTAGCATCAAAATTAGCCCGTAGCAAAGAGAAAACGAACATGTATGGAACGAGAGCGAGCGAGAGAGAAAGAGCGAGCGAGCGAAAGAGAGAGAGAGAAAAGCGAGCGAACGAGAGAGAAAGTGAGAATGAGCATATATATATATATATATATATATATGTACGGAGTACGAAAAGGTTAGAGTCGTGCAGATTTTTTTATGTAGATCAAGAGTGTACCGATACATATAACTACGTATTGTATAC ATATATATATATATGTAAACTTTTTTCTGAATTTAAGAAATTAACCATATATATATAT ]
[+] EMBL BI516089 [ GCCAGCCTTAACAGTATTCGCATCTTTATACTTACCTCTTTAGCTTTAAGAGAACGCGTAGAGACAGAGAGCCAGAGATGCTGTCAGCGCTGACGTTGATCCCCCCATCCCCCCTCTTTGTAGCATCAAAATTAGCCCGTAGCAAAGAGAAAACGAACATGTATGGAACGAGAGCGAGCGAGAGAGAAAGAGCGAGCGAGCGAAAGAGAGAGAGAGAAAAGCGAGCGAACGAGAGAGAAAGTGAGAATGAGCAT ATATATATATATATATATATATGTACGGAGTACGAAAAGNNTAGAGTCGTGCAGATTTTTTTATGTAGATCAAGAGTGTACCGATACAT ]
[+] EMBL BI513014 [ GAAAAGCGAGCGAACGAGAGAGAAAGTGAGAATGAGC ATATATATATATATATATATATGTACGGAGTACGAAAAGGTTAGAGTCGTGCAGATTTTTTTATGTAGATCAAGAGTGTACCGATACATATAACTACGTATTGTATACATATATATATATATATGTAAACTTTTTTCTGAATTTAAGAAATTAACCATATATATATATATCGATATATTGTATAAATATTGTAAAAGATGTCGCCCTCGAGTCGCGCGCATGCGCGATGGTTATGAATCGAGCACAAATAAGAAAGGAAATATATTACGCGTAGCTCCTTTCGATTTCGCTTGTTCGTTTGCTTTTATTATCGATATATATATGCAGGAGGCGTGAAAGGGATGGAATCGATGGGTTGCAAAATTCTTGGACGCTTCGCCG ]
[+] EMBL BI514951 [ TCTGAATTTAAGAAATTAACCATATATATATATATCGATATATTGTATAAATATTGTAAAAGATGTCGCCCTCGAGTCGCGCGCATGCGCGATGGTTATGAATCGAGCACAAATAAGAAAGGAAATATATTACGCGTAGCTCCTTTCGATTTCGCTTGTTCGTTTGCTTTTATTATCGATATATATATGCAGGAGGCGTGAAAGGGATGGAATCGATGGGTTGCAAAATTCTTGGACGCTTCGCCGGACGAACGTACTAAGAGAAATTTAAAAGAGAGAATGAGAATGGAAATTTGATGAACGGGAGAATGAATGAATGAGAGAAAGAGAGAGAGAGAACGAGAAATAGAGAGCAAATGCACCGATATTGGTAATAATTATGATTGTTACTCGAGATCGTTAGGCCTATCGTAATTATTTACTTTAACAGAGGAAGGATATACAGAACAATTATAAATAGGTATAAATATATATATATATATAAAGATTATATATATATATGATACAAACATATACATGCATACATGTATGGAACGAG ]
[-] EMBL BI515886 [ TGGTTATGAATCGAGCACAAATAAGAAAGGAAATATATTACGCGTAGCTCCTTTCGATTTCGCTTGTTCGTTTGCTTTTATTATCGATATATATATGCAGGAGGCGTGAAAGGGATGGAATCGATGGGTTGCAAAATNNTTGGACGCTTCGCCGGACGAACGTANNAAGAGAAATTTAAAAGAGAGAATGAGAATGGAAATTTGATGAACGGGAGAATGAATGAATGAGAGAAAGAGAGAGAGAGAACGAGAAATAGAGAGCAAATGCACCGATATTGGTAATAATTATGATTGTTACTCGAGATCGTTAGGCCTATCGTAATTATTTACTTTAACAGAGGAAGGATATACAGAACAATTATAAATAGGTATAAATATATATATATATATAAAGATTATATATATATATGATACAAACATATACATGCATACATGTATGGAACG ]
[+] EMBL BI516219 [ GTTATGAATCGAGCACAAATAAGAAAGGAAATATATTACGCGTAGCTCCTTTCGATTTCGCTTGTTCGTTTGCTTTTATTATCGATATATATATGCAGGAGGCGTGAAAGGGATGGAATCGATGGGTTGCAAAATTCTTGGACGCTTCGCCGGACGAACGTACTAAGAGAAATTTAAAAGAGAGAATGAGAATGGAAATTTGATGAACGGGAGAATGAATGAATGAGAGAGAGAGAGAGAGAGAACGAGAAATAGAGAGCAAATGCACCGATATTGGTAATAATTATGATTGTTACTCGAGATCGTTAGGCCTATCGTAATTATTTACTTTAACAGAGGAAAGATATACAGAACAATTATAAATAGGTATAA ATATATATATATATAAAGATTATATATATATATGATACAAACATATACATGCATACATGTATGGAACGAGCGCGGTGAGCCCCCTTCTTATGTAGACCTTTAA]
consensusID : consensus_95#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence
[CAGCCTTAACAGTATTCGCATCTTTACACTTACCTCTTTAGCTTTAAGAGAACGCGTAGAGACAGAGAGCCAGAGATGCTGTCAGCGCTGACGTTGATCCCCCCATCCCCCCTCTTTGTAGCATCAAAATTAGCCCGTAGCAAAGAGAAAACGAACATGTATGGAACGAGAGCGAGCGAGAGAGAAAGAGCGAGCGAGCGAGAGAGAAAGAGCGAGCGAGCGAAAGAGAGAGAGAGAAAAGCGAGCGAACGAGAGAGAAAGTGAGAATGAGCATATATATATATATATATATATGTACGGAGTACGAAAAGGTTAGAGTCGTGCAGATTTTTTTATGTAGATCAAGAGTGTACCGATACATATAACTACGTATTNNNTACATATATATATATATATGTAAACTTTTTTCTGAATTTAAGAAATTAACCATATATAT]
[+] EMBL BI513246 [CAGCCTTAACAGTATTCGCATCTTTACACTTACCTCTTTAGCTTTAAGAGAACGCGTAGAGACAGAGAGCCAGAGATGCTGTCAGCGCTGACGTTGATCCCCCCATCCCCCCTCTTTGTAGCATCAAAATTAGCCCGTAGCAAAGAGAAAACGAACATGTATGGAACGAGAGCGAGCGAGAGAGAAAGAGCGAGCGAGCGAGAGAGAAAGAGCGAGCGAGCGAAAGAGAGAGAGAGAAAAGCGAGCGAACGAGAGAGAAAGTGAGAATGAGCATATATATATATATATATATATGTACGGAGTACGAAAAGGTTAGAGTCGTGCAGATTTTTTTATGTAGATCAAGAGTGTACCGATACATATAACTACGTATTNNNTACATATATATATATATATGTAAACTTTTTTCTGAATTTAAGAAATTAACCATATATAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_95#0 CGTTAAAAAGGTTAAGGTCAATTTATAATTGAGTGAAAAATAGAGAAAAAAGTGACGTGG 60
consensus_95#1 ------------------------------------------------------------
consensus_95#0 TTACCGCAGATCGGATCCAACACTGCAGATGAGCGATGTTTAAGCTGTCAGCCAGCCTTA 120
consensus_95#1 ----------------------------------------------------CAGCCTTA 8
********
consensus_95#0 ACAGTATTCGCATCTTTACACTTACCTCTTTAGCTTTAAGAGAACGCGTAGAGACAGAGA 180
consensus_95#1 ACAGTATTCGCATCTTTACACTTACCTCTTTAGCTTTAAGAGAACGCGTAGAGACAGAGA 68
************************************************************
consensus_95#0 GCCAGAGATGCTGTCAGCGCTGACGTTGATCCCCCCATCCCCCCTCTTTGTAGCATCAAA 240
consensus_95#1 GCCAGAGATGCTGTCAGCGCTGACGTTGATCCCCCCATCCCCCCTCTTTGTAGCATCAAA 128
************************************************************
consensus_95#0 ATTAGCCCGTAGCAAAGAGAAAACGAACATGTATGGAACGAGAGCGAGCGAGAGAGAAAG 300
consensus_95#1 ATTAGCCCGTAGCAAAGAGAAAACGAACATGTATGGAACGAGAGCGAGCGAGAGAGAAAG 188
************************************************************
consensus_95#0 AGCGAGCGAGCGA----------------------AAGAGAGAGAGAGAAAAGCGAGCGA 338
consensus_95#1 AGCGAGCGAGCGAGAGAGAAAGAGCGAGCGAGCGAAAGAGAGAGAGAGAAAAGCGAGCGA 248
************* *************************
consensus_95#0 ACGAGAGAGAAAGTGAGAATGAGCATATATATATATATATATATATGTACGGAGTACGAA 398
consensus_95#1 ACGAGAGAGAAAGTGAGAATGAGCATATATATATATATATATATATGTACGGAGTACGAA 308
************************************************************
consensus_95#0 AAGGTTAGAGTCGTGCAGATTTTTTTATGTAGATCAAGAGTGTACCGATACATATAACTA 458
consensus_95#1 AAGGTTAGAGTCGTGCAGATTTTTTTATGTAGATCAAGAGTGTACCGATACATATAACTA 368
************************************************************
consensus_95#0 CGTATTGTATACATATATATATATAT--GTAAACTTTTTTCTGAATTTAAGAAATTAACC 516
consensus_95#1 CGTATTNNNTACATATATATATATATATGTAAACTTTTTTCTGAATTTAAGAAATTAACC 428
****** ***************** ********************************
consensus_95#0 ATATATATATATATCGATATATTGTATAAATATTGTAAAAGATGTCGCCCTCGAGTCGCG 576
consensus_95#1 ATATATAT---------------------------------------------------- 436
********
consensus_95#0 CGCATGCGCGATGGTTATGAATCGAGCACAAATAAGAAAGGAAATATATTACGCGTAGCT 636
consensus_95#1 ------------------------------------------------------------
consensus_95#0 CCTTTCGATTTCGCTTGTTCGTTTGCTTTTATTATCGATATATATATGCAGGAGGCGTGA 696
consensus_95#1 ------------------------------------------------------------
consensus_95#0 AAGGGATGGAATCGATGGGTTGCAAAATTCTTGGACGCTTCGCCGGACGAACGTACTAAG 756
consensus_95#1 ------------------------------------------------------------
consensus_95#0 AGAAATTTAAAAGAGAGAATGAGAATGGAAATTTGATGAACGGGAGAATGAATGAATGAG 816
consensus_95#1 ------------------------------------------------------------
consensus_95#0 AGAAAGAGAGAGAGAGAACGAGAAATAGAGAGCAAATGCACCGATATTGGTAATAATTAT 876
consensus_95#1 ------------------------------------------------------------
consensus_95#0 GATTGTTACTCGAGATCGTTAGGCCTATCGTAATTATTTACTTTAACAGAGGAAGGATAT 936
consensus_95#1 ------------------------------------------------------------
consensus_95#0 ACAGAACAATTATAAATAGGTATAAATATATATATATATATAAAGATTATATATATATAT 996
consensus_95#1 ------------------------------------------------------------
consensus_95#0 GATACAAACATATACATGCATACATGTATGGAACGAGCGCGGTGAGCCCCCTTCTTATGT 1056
consensus_95#1 ------------------------------------------------------------
consensus_95#0 AGACCTTTAA 1066
consensus_95#1 ----------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |