|
These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_971#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 685 fasta sequence
[TATGGAGTCGAAAAGTCAAAGGAATATTTCGGATTTAGCAAAAATCGAGGAGGTTGTTGATCATCCAATCGAGTTGTTTAGGATTTGGCAGGATGAAGCACGAAAATACAATTCGAAAGCGCTAGACATCTGTTGCTTGGCTACAACTTCAAAAGATTGTAAAGTATCTGCAAGGAACGTTGTTCTTCGAGAATTTGATAATGATGGTTTTGTAATTGTAACGGATAATAGGAGTAAAAAGATTGATAATTTAGAAAATATTCCATATGCTGCAATGTGTTACTTTTGGTCTTATGTAAATGAGCAGAACCAAAAGATCCACAAACAGATAAGAATAGAAGGCATTATGAAAAAATTGGAGAAGGAAAATTTCAAGCATTTATATGACAGAGAGCCATTGTTTTGCAAAATTCGTTCTCATATATGCAAACAAGGACATAACGTTGATTGGGATGAATTAAAACAGCGACATGACAAAATATTTGATTCAGTTCGTAAAGGAGAAAATGATTTACCGATGCCGGATCATTTGTAAGTTTATCCACAAACATTTAATCTGATAATGAATATTCCATATTTAAATGTTGTTTCAGCGTTGGATACAAACTTTTTCCGACAATGATGGAATTTTATTTTGCAAGAGATTATTTTATAGCTGATCGTATACTATATCATGAAGATACAT]
[+] EMBL BI512354 [TATGGAGTCGAAAAGTCAAAGGAATATTTCGGATTTAGCAAAAATCGAGGAGGTTGTTGATCATCCAATCGAGTTGTTTAGGATTTGGCAGGATGAAGCACGAAAATACAATTCGAAAGCGCTAGACATCTGTTGCTTGGCTACAACTTCAAAAGATTGTAAAGTATCTGCAAGGAACGTTGTTCTTCGAGAATTTGATAATGATGGTTTTGTAATTGTAACGGATAATAGGAGTAAAAAGATTGATAATTTAGAAAATATTCCATATGCTGCAATGTGTTACTTTTGGTCTTATGTAAATGAGCAGAACCAAAAGATCCACAAACAGATAAGAATAGAAGGCATTATGAAAAAATTGGAGAAGGAAAATTTCAAGCATTTATATGACAGAGAGCCATTGTTTTGCAAAATTCGTTCTCATATATGCAAACAAGGACATAACGTTGATTGGGATGAATTAAAACAGCGACATGACAAAATATTTGATTCAGTTCGTAAAGGAGAAAATGATTTACCGA ]
[+] EMBL BI506323 [ GGTTGTTGATCATCCAATCGAGTTGTTTAGGATTTGGCAGGATGAAGCACGAAAATACAATTCGAAAGCGCTAGACATCTGTTGCTTGGCTACAACTTCAAAAGATTGTAAAGTATCTGCAAGGAACGTTGTTCTTCGAGAATTTGATAATGATGGTTTTGTAATTGTAACGGATAATAGGAGTAAAAAGATTGATAATTTAGAAAATATTCCATATGCTGCAATGTGTTACTTTTGGTCTTATGTAAATGAGCAGAACCAAAAGATCCACAAACAGATAAGAATAGAAGGCATTATGAAAAAATTGGAGAAGGAAAATTTCAAGCATTTATATGACAGAGAGCCATTGTTTTGCAAAATTCGTTCTCATATATGCAAACAAGGTCATAACGTTGATTGGGATGAATTAAAACAGCGACATGACAAAATATTTGATTCAGTTCGTAAAGGAGAAAATGATTTACCGATGCCGGATCATTTGTAAGTTTATCCACAAACATTTAATCTGATAATGAATATTCCATATTTAAATGTTGTTTCAGCGTTGGATACAAACTTTTTCCGACAATGATGGAATTTTATTTTGCAAGAGATTATTTTATAGCTGATCGTATACTATATCATGAAGATACAT]
consensusID : consensus_971#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence
[TCGAGGAAGTTGTTGATCATCCAATCGAGTTGTTTAGGATTTGGCACGATGAAGCACGAAAATACAATTCGAAAGCGCTAGACATCTGTTGCTTGGCTACAACTTCAAAAGATTGTAAAGTATCTGCAAGGAACGTTGTTCTTCGAGAATTTGATAATGATGGTTTTGTAATTGTAACGGATAATAGGAGTAAAAAGATTGATAATTTAGAAAATATTCCATATGCTGCAATGTGTTACTTTTGGTCTTATGTAAATGAACAGAACCAAAAGATCCACAAACAGATAAGAATAGAAGGCATTATGAAAAAATTGGAGAAGGAAAATTTCAAGCATTTATATGACAGAGAGCCATTGTTTTGCAAAATTCGTTCTCATATATGCAAACAAGGACATAACGTTGATTGGGATGAATTAAAACAGCGACATGACAAAATATTTGATTCAGTTCGTAAAGGAGAAAATGATTTACCGATGCCGGATCATTTCGTTGGATACAAACTTTTTCCGACAATGATGGAATTTTATTTTGCAAGAGATTATTTTATAGCTGATCGTATACTATATCATGAAGATACAT]
[+] EMBL BI507993 [TCGAGGAAGTTGTTGATCATCCAATCGAGTTGTTTAGGATTTGGCACGATGAAGCACGAAAATACAATTCGAAAGCGCTAGACATCTGTTGCTTGGCTACAACTTCAAAAGATTGTAAAGTATCTGCAAGGAACGTTGTTCTTCGAGAATTTGATAATGATGGTTTTGTAATTGTAACGGATAATAGGAGTAAAAAGATTGATAATTTAGAAAATATTCCATATGCTGCAATGTGTTACTTTTGGTCTTATGTAAATGAACAGAACCAAAAGATCCACAAACAGATAAGAATAGAAGGCATTATGAAAAAATTGGAGAAGGAAAATTTCAAGCATTTATATGACAGAGAGCCATTGTTTTGCAAAATTCGTTCTCATATATGCAAACAAGGACATAACGTTGATTGGGATGAATTAAAACAGCGACATGACAAAATATTTGATTCAGTTCGTAAAGGAGAAAATGATTTACCGATGCCGGATCATTTCGTTGGATACAAACTTTTTCCGACAATGATGGAATTTTATTTTGCAAGAGATTATTTTATAGCTGATCGTATACTATATCATGAAGATACAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_971#0 TATGGAGTCGAAAAGTCAAAGGAATATTTCGGATTTAGCAAAAATCGAGGAGGTTGTTGA 60
consensus_971#1 --------------------------------------------TCGAGGAAGTTGTTGA 16
******* ********
consensus_971#0 TCATCCAATCGAGTTGTTTAGGATTTGGCAGGATGAAGCACGAAAATACAATTCGAAAGC 120
consensus_971#1 TCATCCAATCGAGTTGTTTAGGATTTGGCACGATGAAGCACGAAAATACAATTCGAAAGC 76
****************************** *****************************
consensus_971#0 GCTAGACATCTGTTGCTTGGCTACAACTTCAAAAGATTGTAAAGTATCTGCAAGGAACGT 180
consensus_971#1 GCTAGACATCTGTTGCTTGGCTACAACTTCAAAAGATTGTAAAGTATCTGCAAGGAACGT 136
************************************************************
consensus_971#0 TGTTCTTCGAGAATTTGATAATGATGGTTTTGTAATTGTAACGGATAATAGGAGTAAAAA 240
consensus_971#1 TGTTCTTCGAGAATTTGATAATGATGGTTTTGTAATTGTAACGGATAATAGGAGTAAAAA 196
************************************************************
consensus_971#0 GATTGATAATTTAGAAAATATTCCATATGCTGCAATGTGTTACTTTTGGTCTTATGTAAA 300
consensus_971#1 GATTGATAATTTAGAAAATATTCCATATGCTGCAATGTGTTACTTTTGGTCTTATGTAAA 256
************************************************************
consensus_971#0 TGAGCAGAACCAAAAGATCCACAAACAGATAAGAATAGAAGGCATTATGAAAAAATTGGA 360
consensus_971#1 TGAACAGAACCAAAAGATCCACAAACAGATAAGAATAGAAGGCATTATGAAAAAATTGGA 316
*** ********************************************************
consensus_971#0 GAAGGAAAATTTCAAGCATTTATATGACAGAGAGCCATTGTTTTGCAAAATTCGTTCTCA 420
consensus_971#1 GAAGGAAAATTTCAAGCATTTATATGACAGAGAGCCATTGTTTTGCAAAATTCGTTCTCA 376
************************************************************
consensus_971#0 TATATGCAAACAAGGACATAACGTTGATTGGGATGAATTAAAACAGCGACATGACAAAAT 480
consensus_971#1 TATATGCAAACAAGGACATAACGTTGATTGGGATGAATTAAAACAGCGACATGACAAAAT 436
************************************************************
consensus_971#0 ATTTGATTCAGTTCGTAAAGGAGAAAATGATTTACCGATGCCGGATCATTTGTAAGTTTA 540
consensus_971#1 ATTTGATTCAGTTCGTAAAGGAGAAAATGATTTACCGATGCCGGATCATTT--------- 487
***************************************************
consensus_971#0 TCCACAAACATTTAATCTGATAATGAATATTCCATATTTAAATGTTGTTTCAGCGTTGGA 600
consensus_971#1 -----------------------------------------------------CGTTGGA 494
*******
consensus_971#0 TACAAACTTTTTCCGACAATGATGGAATTTTATTTTGCAAGAGATTATTTTATAGCTGAT 660
consensus_971#1 TACAAACTTTTTCCGACAATGATGGAATTTTATTTTGCAAGAGATTATTTTATAGCTGAT 554
************************************************************
consensus_971#0 CGTATACTATATCATGAAGATACAT 685
consensus_971#1 CGTATACTATATCATGAAGATACAT 579
*************************
|
|||||||
| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |