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Apis mellifera
cluster # 973 cluster # 973       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_973#0 length = 830 sequences # 2  
 consensus_973#1 length = 502 sequences # 1  
consensusID : consensus_973#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 830
fasta sequence 
                              [TCATTTGAAATTAAGATAATTAAGAAAGATAGATTTGGCAATTTAGATCGGCCAGTCGATGAAAACTGTTTCGTTTGAAAACGCAAGGATATTTTGTATCGCGTGTTTTGTTTACTTTTTTTTTTTTTTGTTCCTTTTCCTTCTCTAGACATAGAGATAGAAATGATCGAGAAGATAGCGGTGGATAGAAATATTCATTCGATCTTGCTCATTTATTCGTACGTATTATACATCTCCATCGATCTGATTAAATATATTCATTGATATCCGCGTATATTTGGAGGAAGGGGGAAACGTATCGTTTCGCGACATTCGAACGAACGAGATAATTGCGAGGCGATTACGAGTGAAATGAAGCACGCGGGGGATACGATCGATTAAACGCAGGTGGAGATAGATACGGTATGATTTTGGTGCGTGGCGCCACGGAAAAATAAGTAAGATAGTAAAGCTAGCGATAAGAACAAAAAGGAGAAAGGGAGAGGAAGAAAAATAGGCGAGAAGAGGGGAGAAACGTGGAGGAGACGGTTATATATGGGCGGACGATGATCGTCTGTCGTCTCTGTTCATCTTCGAGTTTTTAGAGTCAAGGATCGATCGAGAACGAATCGAATGGAAAGGAGAGAAGAGGAGAGGAGAGGAGAGAAAGAAAAGCAAGCACCCTGATACTCTACCATTGTTGCGACAAAGAATAAGCCAGCCAACCGATAAACAGAAAGTAATAATCTGAGGGAAACAGGACATCACACCGACACGACCAATAGCATATTAACACAATTTGTTGAAGCAGCTAAAAAAACCAATTATTATTATTATCCAAGTGAAGCTTT]

[+] EMBL BI506703             [TCATTTGAAATTAAGATAATTAAGAAAGATAGATTTGGCAATTTAGATCGGCCAGTCGATGAAAACTGTTTCGTTTGAAAACGCAAGGATATTTTGTATCGCGTGTTTTGTTTACTTTTTTTTTTTTTTGTTCCTTTTCCTTCTCTAGACATAGAGATAGAAATGATCGAGAAGATAGCGGTGGATAGAAATATTCATTCGATCTTGCTCATTTATTCGTACGTATTATACATCTCCATCGATCTGATTAAATATATTCATTGATATCCGCGTATATTTGGAGGAAGGGGGAAACGTATCGTTTCGCGACATTCGAACGAACGAGATAATTGCGAGGCGATTACGAGTGAAATGAAGCACGCGGGGGATACGATCGATTAAACACAGGTGGAGATAGATACGGTATGATTTTGGTGCGTGGCGCCACGGAAAAATAAGTAAGATAGTAAAGCTAGC                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BI509247             [                                                                                                                                                                                                                                            CATCGATCTGATTAAATATATTCATTGATATCCGCGTATATTTGGAGGAAGGGGGAAACGTATCGTTTCGCGACATTCGAACGAACGAGATAATTGCGAGGCGATTACGAGTGAAATGAAGCACGCGGGGGATACGATCGATTAAACGCAGGTGGAGATAGATACGGTATGATTTTGGTGCGTGGCGCCACGGAAAAATAAGTAAGATAGTAAAGCTAGCGATAAGAACAAAAAGGAGAAAGGGAGAGGAAGAAAAATAGGCGAGAAGAGGGGAGAAACGTGGAGGAGACGGTTATATATGGGCGGACGATGATCGTCTGTCGTCTCTGTTCATCTTCGAGTTTTTAGAGTCAAGGATCGATCGAGAACGAATCGAATGGAAAGGAGAGAAGAGGAGAGGAGAGGAGAGAAAGAAAAGCAAGCACCCTGATACTCTACCATTGTTGCGACAAAGAATAAGCCAGCCAACCGATAAACAGAAAGTAATAATCTGAGGGAAACAGGACATCACACCGACACGACCAATAGCATATTAACACAATTTGTTGAAGCAGCTAAAAAAACCAATTATTATTATTATCCAAGTGAAGCTTT]




>consensus_973#0
TCATTTGAAATTAAGATAATTAAGAAAGATAGATTTGGCAATTTAGATCGGCCAGTCGAT
GAAAACTGTTTCGTTTGAAAACGCAAGGATATTTTGTATCGCGTGTTTTGTTTACTTTTT
TTTTTTTTTGTTCCTTTTCCTTCTCTAGACATAGAGATAGAAATGATCGAGAAGATAGCG
GTGGATAGAAATATTCATTCGATCTTGCTCATTTATTCGTACGTATTATACATCTCCATC
GATCTGATTAAATATATTCATTGATATCCGCGTATATTTGGAGGAAGGGGGAAACGTATC
GTTTCGCGACATTCGAACGAACGAGATAATTGCGAGGCGATTACGAGTGAAATGAAGCAC
GCGGGGGATACGATCGATTAAACGCAGGTGGAGATAGATACGGTATGATTTTGGTGCGTG
GCGCCACGGAAAAATAAGTAAGATAGTAAAGCTAGCGATAAGAACAAAAAGGAGAAAGGG
AGAGGAAGAAAAATAGGCGAGAAGAGGGGAGAAACGTGGAGGAGACGGTTATATATGGGC
GGACGATGATCGTCTGTCGTCTCTGTTCATCTTCGAGTTTTTAGAGTCAAGGATCGATCG
AGAACGAATCGAATGGAAAGGAGAGAAGAGGAGAGGAGAGGAGAGAAAGAAAAGCAAGCA
CCCTGATACTCTACCATTGTTGCGACAAAGAATAAGCCAGCCAACCGATAAACAGAAAGT
AATAATCTGAGGGAAACAGGACATCACACCGACACGACCAATAGCATATTAACACAATTT
GTTGAAGCAGCTAAAAAAACCAATTATTATTATTATCCAAGTGAAGCTTT

consensusID : consensus_973#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 502
fasta sequence 
                              [CAGTTTTCATCGACTGGCCGATCTAAATTGCCAAATCTATCTTTCTTAATTATCTTAATTTCAAATGAACATGTACGCGTGCGAAAATATTACATATTATCGTTTTTGTCGAAAAATTCAAATGAATAAAAGAAGAAGAGAAATTACCACATACATTTTATCCAATCTTAATAAATTTATACGTTCAATTTTGTACACCCAAATTACATATGATTTTTTTATCAAACGCGTACTTTGAACTACGTTAGATTTTTTGGTAAATTATTTTTTTATCGTAATCACCCCCCCCCCCCCCCTTCGTAAAATCCGCGAGTAAACTCAAATGTTAGCTGTCAACTCGAACCGTCGTGCATCGTGACAATTAATGTTCCACGAATATGACAAATTTTTTTTTTAACATTCGCCTAAACACATATCACGATCTCTTAAGAAAAAAATTGATGGATCGATTTCTCTATATCGAGTTGACGCGCGATGTATCTAGTTTATTTTTATTTTTTTT]

[+] EMBL BI505702             [CAGTTTTCATCGACTGGCCGATCTAAATTGCCAAATCTATCTTTCTTAATTATCTTAATTTCAAATGAACATGTACGCGTGCGAAAATATTACATATTATCGTTTTTGTCGAAAAATTCAAATGAATAAAAGAAGAAGAGAAATTACCACATACATTTTATCCAATCTTAATAAATTTATACGTTCAATTTTGTACACCCAAATTACATATGATTTTTTTATCAAACGCGTACTTTGAACTACGTTAGATTTTTTGGTAAATTATTTTTTTATCGTAATCACCCCCCCCCCCCCCCTTCGTAAAATCCGCGAGTAAACTCAAATGTTAGCTGTCAACTCGAACCGTCGTGCATCGTGACAATTAATGTTCCACGAATATGACAAATTTTTTTTTTAACATTCGCCTAAACACATATCACGATCTCTTAAGAAAAAAATTGATGGATCGATTTCTCTATATCGAGTTGACGCGCGATGTATCTAGTTTATTTTTATTTTTTTT]




>consensus_973#1
CAGTTTTCATCGACTGGCCGATCTAAATTGCCAAATCTATCTTTCTTAATTATCTTAATT
TCAAATGAACATGTACGCGTGCGAAAATATTACATATTATCGTTTTTGTCGAAAAATTCA
AATGAATAAAAGAAGAAGAGAAATTACCACATACATTTTATCCAATCTTAATAAATTTAT
ACGTTCAATTTTGTACACCCAAATTACATATGATTTTTTTATCAAACGCGTACTTTGAAC
TACGTTAGATTTTTTGGTAAATTATTTTTTTATCGTAATCACCCCCCCCCCCCCCCTTCG
TAAAATCCGCGAGTAAACTCAAATGTTAGCTGTCAACTCGAACCGTCGTGCATCGTGACA
ATTAATGTTCCACGAATATGACAAATTTTTTTTTTAACATTCGCCTAAACACATATCACG
ATCTCTTAAGAAAAAAATTGATGGATCGATTTCTCTATATCGAGTTGACGCGCGATGTAT
CTAGTTTATTTTTATTTTTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_973#0      TCATTTGAAATTAAGATAATTAAGAAAGATAGATTTGGCAATTTAGATCGGCCAGTCGAT 60
consensus_973#1      --------------------------------------CAGTTTTCATCGACTGGCCGAT 22
                                                           ** ***  **** *  * ****

consensus_973#0      GAAAACTGTTTCGTTTGAAAACGCAAGGATATTTTGTATCGCGTGTTT-TGTTTACTTTT 119
consensus_973#1      CTAAATTGCCAAATCTATCTTTCTTAATTATCTTAATTTCAAATGAACATGTACGCGTGC 82
                       *** **     * *         *      **  * **   **    ***   * *  

consensus_973#0      TTTTTTTTTTGTTCCTTTTCCTTCTCTAGACATAGAGATAGAAATGATCGAGAAGATAGC 179
consensus_973#1      GAAAATATTACATATTATCGTTTTTGTCGAAAAATTCAAATGAATAAAAGA-AGAAGAGA 141
                          * **   *  * *   ** * * ** * *   * *  *** *  ** *  * ** 

consensus_973#0      GGTGGATAGAAATATTC-ATTCGATCTTGCTCA-TTTATTCGTACG-TATTATACATCTC 236
consensus_973#1      AATTACCACATACATTTTATCCAATCTTAATAAATTTATACGTTCAATTTTGTACACCCA 201
                       *    * * * ***  ** * *****  * * ***** *** *  * ** **** *  

consensus_973#0      CATCG-ATCTGATTAAATATATTCATTG-ATATCCGCGTATATTTGGAGGAAGGGGGAAA 294
consensus_973#1      AATTACATATGATTTT-TTTATCAAACGCGTACTTTGAACTACGTTAGATTTTTTGGTAA 260
                      **   ** *****   * ***  *  *  **        **  *          ** **

consensus_973#0      CGTATCGTTTCGCGACATTCGAACGAACGAGATAATTGCGAGGCGATTACGAGTGAAATG 354
consensus_973#1      ATTATTTTTTTATCGTAATCACCCCCCCCCCCCCCCTTCGTAAAATCCGCGAGTAAACTC 320
                       ***  ***      * **   *   *        * **         ***** ** * 

consensus_973#0      AAGCAC--GCGGGGGATACGATCGATTAAACGCAGGTGGAGATAGATACGGTATGATTTT 412
consensus_973#1      AAATGTTAGCTGTCAACTCGAACCGTCGTGCATCG-TGACAATTAATGTTCCACGAATAT 379
                     **      ** *   *  *** *  *    *   * **   **  **     * ** * *

consensus_973#0      GGTGCGTGGCGCCACGGAAAAATAAGTAAGATAGTAAAGCTAGCGATAAGAACAAAAAGG 472
consensus_973#1      GACAAATTTTTTTTTTAACATTCGCCTAAACACATATCACGATCTCTTAAGA-AAAAAAT 438
                     *     *          * *      ***     **   * * *  * *  * *****  

consensus_973#0      AGAAAGGGAGAGGAAGAAAAATAGGCGAGAAGAGGGGAGAAACGTGGAGGAGACGGTTAT 532
consensus_973#1      TGATGGATCGATTTCTCTATAT---CGAGTTGACGCGCGATGTATCTAGTTTATTTTTAT 495
                      **  *   **       * **   ****  ** * * **    *  **   *   ****

consensus_973#0      ATATGGGCGGACGATGATCGTCTGTCGTCTCTGTTCATCTTCGAGTTTTTAGAGTCAAGG 592
consensus_973#1      TTTTTTT----------------------------------------------------- 502
                      * *                                                        

consensus_973#0      ATCGATCGAGAACGAATCGAATGGAAAGGAGAGAAGAGGAGAGGAGAGGAGAGAAAGAAA 652
consensus_973#1      ------------------------------------------------------------
                                                                                 

consensus_973#0      AGCAAGCACCCTGATACTCTACCATTGTTGCGACAAAGAATAAGCCAGCCAACCGATAAA 712
consensus_973#1      ------------------------------------------------------------
                                                                                 

consensus_973#0      CAGAAAGTAATAATCTGAGGGAAACAGGACATCACACCGACACGACCAATAGCATATTAA 772
consensus_973#1      ------------------------------------------------------------
                                                                                 

consensus_973#0      CACAATTTGTTGAAGCAGCTAAAAAAACCAATTATTATTATTATCCAAGTGAAGCTTT 830
consensus_973#1      ----------------------------------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)