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Apis mellifera
cluster # 980 cluster # 980       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_980#0 length = 573 sequences # 2  
 consensus_980#1 length = 420 sequences # 1  
consensusID : consensus_980#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 573
fasta sequence 
                              [TGAGAACTGAGAATTAGTTTCATCCTTATTTTGTACCTGAAAAATGACACAGTTTCTGCCACCTAATCTATTAGCACTTTTTGCTCCGCGGGATCCTATACCTTATTTACCACCCGTTAGCAAGCTTCCGCACGAGAAGAAAAATGGAGGCTATATTGGCGTTGGAGGTTTTCTTAAATATTTTGAGGATCCCAAAGATACACCACCACCAGTACGTGTGGAAACAAGAGAAGAACGTCTTGAACGAAGAAGAAGAGAACGCGCAGAACAAGTGGCCTATAAATTAGAACAAGAAATTGCAGTATGGGATCCTGCTGGTATTCTAAATGTAACAGCAGACCCTTTTAAAACTCTTTTTGTAGCTCGAATAAACTATGATACATCTGAATCCAAACTTAGAAGGGAATTTGAAGTATACGGTCCAGTAAAAAAGATAGTGGTAATTCACAATACAATAAATGGCAAACCTAGGGGATATGCTTTCATTGAGTATGAGCACGAAAGAGATATGCACTCGTGGTGGCCGCTGCCGGCAACTAGTGCCGTTCACTATTCCATGCACTATTCCCTGAA]

[+] EMBL BI513648             [TGAGAACTGAGAATTAGTTTCATCCTTATTTTGTACCTGAAAAATGACACAGTTTCTGCCACCTAATCTATTAGCACTTTTTGCTCCGCGGGATCCTATACCTTATTTACCACCCGTTAGCAAGCTTCCGCACGAGAAGAAAAATGGAGGCTATATTGGCGTTGGAGGTTTTCTTAAATATTTTGAGGATCCCAAAGATACACCACCACCAGTACGTGTGGAAACAAGAGAAGAACGTCTTGAACGAAGAAGAAGAGAACGCGCAGAACAAGTGGCCTATAAATTAGAACAAGAAATTGCAGTATGGGATCCTGCTGGTATTCTAAATGTAACAGCAGACCCTTTTAAAACTCTTTTTGTAGCTCGAATAAACTATGATACATCTGAATCCAAACTTAGAAGGGAATTTGAAGTATACGGTCCAGTAAAAAAGATAGTGGTAATTCACAATA                                                                                                                         ]
[+] EMBL BI515966             [                                             GACACAGTTTCTGCCACCTAATCTATTAGCACTTTTTGCTCCGCGGGATCCTATACCTTATTTACCACCCGTTAGCAAGCTTCCGCACGAGAAGAAAAATGGAGGCTATATTGGCGTTGGAGGTTTTCTTAAATATTTTGAGGATCCCAAAGATACACCACCACCAGTACGTGTGGAAACAAGAGAAGAACGTCTTGAACGAAGAAGAAGAGAACGCGCAGAACAAGTGGCCTATAAATTAGAACAAGAAATTGCAGTATGGGATCCTGCTGGTATTCTAAATGTAACAGCAGACCCTTTTAAAACTCTTTTTGTAGCTCGAATAAACTATGATACATCTGAATCCAAACTTAGAAGGGAATTTGAAGTATACGGTCCAGTAAAAAAGATAGTGGTAATTCACAATACAATAAATGGCAAACCTAGGGGATATGCTTTCATTGAGTATGAGCACGAAAGAGATATGCACTCGTGGTGGCCGCTGCCGGCAACTAGTGCCGTTCACTATTCCATGCACTATTCCCTGAA]




>consensus_980#0
TGAGAACTGAGAATTAGTTTCATCCTTATTTTGTACCTGAAAAATGACACAGTTTCTGCC
ACCTAATCTATTAGCACTTTTTGCTCCGCGGGATCCTATACCTTATTTACCACCCGTTAG
CAAGCTTCCGCACGAGAAGAAAAATGGAGGCTATATTGGCGTTGGAGGTTTTCTTAAATA
TTTTGAGGATCCCAAAGATACACCACCACCAGTACGTGTGGAAACAAGAGAAGAACGTCT
TGAACGAAGAAGAAGAGAACGCGCAGAACAAGTGGCCTATAAATTAGAACAAGAAATTGC
AGTATGGGATCCTGCTGGTATTCTAAATGTAACAGCAGACCCTTTTAAAACTCTTTTTGT
AGCTCGAATAAACTATGATACATCTGAATCCAAACTTAGAAGGGAATTTGAAGTATACGG
TCCAGTAAAAAAGATAGTGGTAATTCACAATACAATAAATGGCAAACCTAGGGGATATGC
TTTCATTGAGTATGAGCACGAAAGAGATATGCACTCGTGGTGGCCGCTGCCGGCAACTAG
TGCCGTTCACTATTCCATGCACTATTCCCTGAA

consensusID : consensus_980#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 420
fasta sequence 
                              [ACACCACCACCAGTACGTGTGGAAACAAGAGAAGAACGTCTTGAACGAAGAAGAAGAGAACGCGCAGAACAAGTGGCCTATAAATTAGAACAAGAAATTGCAGTATGGGATCCTGCTGGTATTCTAAATGTAACAGNNGACCCTTTTAAAACTCTTTTTGTAGCTCGAATAAACTATGATACATCTGAATCCAAACTTAGAAGGGAATTTGAAGTANNNNGTCCAGTAAAAAAGATAGTGGTAATTCACAATACAATAAATGGCAAACCTAGGGGATATGCTTTCATTGAGTATGAGCACGAAAGAGATATGCACTGTAAGTAAAGCCCAAGAAATGAGAACCCCTTCTTGAGAACCTCAGTGAGTCCATAGTCTGGAATTTCATCCTTACTTAGCGTCACTTCCAGCTAGTTATAGTGG]

[+] EMBL BI505740             [ACACCACCACCAGTACGTGTGGAAACAAGAGAAGAACGTCTTGAACGAAGAAGAAGAGAACGCGCAGAACAAGTGGCCTATAAATTAGAACAAGAAATTGCAGTATGGGATCCTGCTGGTATTCTAAATGTAACAGNNGACCCTTTTAAAACTCTTTTTGTAGCTCGAATAAACTATGATACATCTGAATCCAAACTTAGAAGGGAATTTGAAGTANNNNGTCCAGTAAAAAAGATAGTGGTAATTCACAATACAATAAATGGCAAACCTAGGGGATATGCTTTCATTGAGTATGAGCACGAAAGAGATATGCACTGTAAGTAAAGCCCAAGAAATGAGAACCCCTTCTTGAGAACCTCAGTGAGTCCATAGTCTGGAATTTCATCCTTACTTAGCGTCACTTCCAGCTAGTTATAGTGG]




>consensus_980#1
ACACCACCACCAGTACGTGTGGAAACAAGAGAAGAACGTCTTGAACGAAGAAGAAGAGAA
CGCGCAGAACAAGTGGCCTATAAATTAGAACAAGAAATTGCAGTATGGGATCCTGCTGGT
ATTCTAAATGTAACAGNNGACCCTTTTAAAACTCTTTTTGTAGCTCGAATAAACTATGAT
ACATCTGAATCCAAACTTAGAAGGGAATTTGAAGTANNNNGTCCAGTAAAAAAGATAGTG
GTAATTCACAATACAATAAATGGCAAACCTAGGGGATATGCTTTCATTGAGTATGAGCAC
GAAAGAGATATGCACTGTAAGTAAAGCCCAAGAAATGAGAACCCCTTCTTGAGAACCTCA
GTGAGTCCATAGTCTGGAATTTCATCCTTACTTAGCGTCACTTCCAGCTAGTTATAGTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_980#0      TGAGAACTGAGAATTAGTTTCATCCTTATTTTGTACCTGAAAAATGACACAGTTTCTGCC 60
consensus_980#1      ------------------------------------------------------------
                                                                                 

consensus_980#0      ACCTAATCTATTAGCACTTTTTGCTCCGCGGGATCCTATACCTTATTTACCACCCGTTAG 120
consensus_980#1      ------------------------------------------------------------
                                                                                 

consensus_980#0      CAAGCTTCCGCACGAGAAGAAAAATGGAGGCTATATTGGCGTTGGAGGTTTTCTTAAATA 180
consensus_980#1      ------------------------------------------------------------
                                                                                 

consensus_980#0      TTTTGAGGATCCCAAAGATACACCACCACCAGTACGTGTGGAAACAAGAGAAGAACGTCT 240
consensus_980#1      -------------------ACACCACCACCAGTACGTGTGGAAACAAGAGAAGAACGTCT 41
                                        *****************************************

consensus_980#0      TGAACGAAGAAGAAGAGAACGCGCAGAACAAGTGGCCTATAAATTAGAACAAGAAATTGC 300
consensus_980#1      TGAACGAAGAAGAAGAGAACGCGCAGAACAAGTGGCCTATAAATTAGAACAAGAAATTGC 101
                     ************************************************************

consensus_980#0      AGTATGGGATCCTGCTGGTATTCTAAATGTAACAGCAGACCCTTTTAAAACTCTTTTTGT 360
consensus_980#1      AGTATGGGATCCTGCTGGTATTCTAAATGTAACAGNNGACCCTTTTAAAACTCTTTTTGT 161
                     ***********************************  ***********************

consensus_980#0      AGCTCGAATAAACTATGATACATCTGAATCCAAACTTAGAAGGGAATTTGAAGTATACGG 420
consensus_980#1      AGCTCGAATAAACTATGATACATCTGAATCCAAACTTAGAAGGGAATTTGAAGTANNNNG 221
                     *******************************************************    *

consensus_980#0      TCCAGTAAAAAAGATAGTGGTAATTCACAATACAATAAATGGCAAACCTAGGGGATATGC 480
consensus_980#1      TCCAGTAAAAAAGATAGTGGTAATTCACAATACAATAAATGGCAAACCTAGGGGATATGC 281
                     ************************************************************

consensus_980#0      TTTCATTGAGTATGAGCACGAAAGAGATATGCACTCGTGGTGGCCGCTGCCGGCAACTAG 540
consensus_980#1      TTTCATTGAGTATGAGCACGAAAGAGATATGCACTGTAAGTAA--AGCCCAAGAAATGAG 339
                     ***********************************    **        *  * **  **

consensus_980#0      TGCCGTTCACTA-----TTCCATGCA-CTATTCCCTGAA--------------------- 573
consensus_980#1      AACCCCTTCTTGAGAACCTCAGTGAGTCCATAGTCTGGAATTTCATCCTTACTTAGCGTC 399
                       **  *   *       **  **   * **   *** *                     

consensus_980#0      ---------------------
consensus_980#1      ACTTCCAGCTAGTTATAGTGG 420


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)