cluster # 1000

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Oryza sativa
cluster # 1000 cluster # 1000 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1000#0 length = 738 sequences # 1

consensus_1000#1 length = 481 sequences # 1

consensusID : consensus_1000#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 738
fasta sequence

                              [CCTTTAAAGTTTTTTTTGGGAGAGACTAATTTTGATTCATTCCTTAACTAGAATGACGATACAATCCATCCTTATATAGATGGAGGAAGGACCCAGTCTAATCTTATCCAACCGACTCTATCCTTATCCCTAGGGCCTCGACCTCTCGGCCTACTACCTATGACACTACATCCCTCCTTTCGAGCAGCTCATACGACTTTCTAAATAAAACCTAACATAACTTAAGCCTTTTACATCTCGGCTTGTTACTTTATTGCAAAAAATTGAAAGGGTAAATAAATCAAAGATTATGATGCACCACCATACTATCTCGCTGATAACACATGCAGGTGGACCCCATCCAAAAGCTTTGAGAGAAAGGATAAGTCCACAGCACGTTGCAAGCTTGATTGCATATCTGATCTGTTTTCCAAGGTTAGCCCCACCTGGCCAACACAACAGCCAAGACATGGGCTGCCACACTTGAAGCCCAGTCCACTGGAACAGCCCAAAAGAAAGGTTATGTTGGCCCATTAAAAACAGAGGCGAACATCCTATCCGCAGCTCCTCTCTGCCGCAGCGCAGCCAATCGACGATGACACGGTAAAAACGGCGCTGCTGTGCTTCCTTCTTATCCAAGCCGCGAACACCGCGCGGGCGCCGGCCATCCACCGCACCAACCACCGCCGCCGAAATCAGCTCCGAAGCTGCCGCATCATGATCTCGCGGAAATCGCGCCACCCACAACTGTCGGGGCAT]

[+] EMBL CB646085             [CCTTTAAAGTTTTTTTTGGGAGAGACTAATTTTGATTCATTCCTTAACTAGAATGACGATACAATCCATCCTTATATAGATGGAGGAAGGACCCAGTCTAATCTTATCCAACCGACTCTATCCTTATCCCTAGGGCCTCGACCTCTCGGCCTACTACCTATGACACTACATCCCTCCTTTCGAGCAGCTCATACGACTTTCTAAATAAAACCTAACATAACTTAAGCCTTTTACATCTCGGCTTGTTACTTTATTGCAAAAAATTGAAAGGGTAAATAAATCAAAGATTATGATGCACCACCATACTATCTCGCTGATAACACATGCAGGTGGACCCCATCCAAAAGCTTTGAGAGAAAGGATAAGTCCACAGCACGTTGCAAGCTTGATTGCATATCTGATCTGTTTTCCAAGGTTAGCCCCACCTGGCCAACACAACAGCCAAGACATGGGCTGCCACACTTGAAGCCCAGTCCACTGGAACAGCCCAAAAGAAAGGTTATGTTGGCCCATTAAAAACAGAGGCGAACATCCTATCCGCAGCTCCTCTCTGCCGCAGCGCAGCCAATCGACGATGACACGGTAAAAACGGCGCTGCTGTGCTTCCTTCTTATCCAAGCCGCGAACACCGCGCGGGCGCCGGCCATCCACCGCACCAACCACCGCCGCCGAAATCAGCTCCGAAGCTGCCGCATCATGATCTCGCGGAAATCGCGCCACCCACAACTGTCGGGGCAT]




>consensus_1000#0
CCTTTAAAGTTTTTTTTGGGAGAGACTAATTTTGATTCATTCCTTAACTAGAATGACGAT
ACAATCCATCCTTATATAGATGGAGGAAGGACCCAGTCTAATCTTATCCAACCGACTCTA
TCCTTATCCCTAGGGCCTCGACCTCTCGGCCTACTACCTATGACACTACATCCCTCCTTT
CGAGCAGCTCATACGACTTTCTAAATAAAACCTAACATAACTTAAGCCTTTTACATCTCG
GCTTGTTACTTTATTGCAAAAAATTGAAAGGGTAAATAAATCAAAGATTATGATGCACCA
CCATACTATCTCGCTGATAACACATGCAGGTGGACCCCATCCAAAAGCTTTGAGAGAAAG
GATAAGTCCACAGCACGTTGCAAGCTTGATTGCATATCTGATCTGTTTTCCAAGGTTAGC
CCCACCTGGCCAACACAACAGCCAAGACATGGGCTGCCACACTTGAAGCCCAGTCCACTG
GAACAGCCCAAAAGAAAGGTTATGTTGGCCCATTAAAAACAGAGGCGAACATCCTATCCG
CAGCTCCTCTCTGCCGCAGCGCAGCCAATCGACGATGACACGGTAAAAACGGCGCTGCTG
TGCTTCCTTCTTATCCAAGCCGCGAACACCGCGCGGGCGCCGGCCATCCACCGCACCAAC
CACCGCCGCCGAAATCAGCTCCGAAGCTGCCGCATCATGATCTCGCGGAAATCGCGCCAC
CCACAACTGTCGGGGCAT

consensusID : consensus_1000#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 481
fasta sequence

                              [ATACGCTACGTAACGGCATGACATTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGCCCACAGCACGTTGCAAGCTTGATTGCATATCTGATCTGTTTTCCAAGGTTAGCCCCACCTGGCCAACACAACAGCCAAAACATGGGCTGCCACACTTTAAGCCCAGTCCACGGGAACAGCCCAAAAAAAAGGTTATGTTGGCCCATTAAAAACAGAGGCGAACATCCTATCCGCAGCTCCTTTTTGCCGCAGCGCAGCCAATCGACGATGACACGGTAAAAACGGCGCTGCTGGGCTTCCTTTTTATCCAAGCCGGGAACACCGCGCGGGCGCCGGCCATCCACCGAACCAACCACCGGCGCCGAAATAAGCTCCGAAGCTGCCGCATCATGATCTCGCGGAAATCGCGCCACCCACAACTGTCGGGGCATGAGGGCATTTCCCGTAAGCTCAAATCGAGCC]

[+] EMBL CF277113             [ATACGCTACGTAACGGCATGACATTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGCCCACAGCACGTTGCAAGCTTGATTGCATATCTGATCTGTTTTCCAAGGTTAGCCCCACCTGGCCAACACAACAGCCAAAACATGGGCTGCCACACTTTAAGCCCAGTCCACGGGAACAGCCCAAAAAAAAGGTTATGTTGGCCCATTAAAAACAGAGGCGAACATCCTATCCGCAGCTCCTTTTTGCCGCAGCGCAGCCAATCGACGATGACACGGTAAAAACGGCGCTGCTGGGCTTCCTTTTTATCCAAGCCGGGAACACCGCGCGGGCGCCGGCCATCCACCGAACCAACCACCGGCGCCGAAATAAGCTCCGAAGCTGCCGCATCATGATCTCGCGGAAATCGCGCCACCCACAACTGTCGGGGCATGAGGGCATTTCCCGTAAGCTCAAATCGAGCC]




>consensus_1000#1
ATACGCTACGTAACGGCATGACATTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTAAGCCCACAGCACGTTGCAAGCTTGATTGCATATCTGATCTGTTT
TCCAAGGTTAGCCCCACCTGGCCAACACAACAGCCAAAACATGGGCTGCCACACTTTAAG
CCCAGTCCACGGGAACAGCCCAAAAAAAAGGTTATGTTGGCCCATTAAAAACAGAGGCGA
ACATCCTATCCGCAGCTCCTTTTTGCCGCAGCGCAGCCAATCGACGATGACACGGTAAAA
ACGGCGCTGCTGGGCTTCCTTTTTATCCAAGCCGGGAACACCGCGCGGGCGCCGGCCATC
CACCGAACCAACCACCGGCGCCGAAATAAGCTCCGAAGCTGCCGCATCATGATCTCGCGG
AAATCGCGCCACCCACAACTGTCGGGGCATGAGGGCATTTCCCGTAAGCTCAAATCGAGC
C

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1000#0      CCTTTAAAGTTTTTTTTGGGAGAGACTAATTTTGATTCATTCCTTAACTAGAATGACGAT 60
consensus_1000#1      ------------------------------------------------------------
                                                                                  

consensus_1000#0      ACAATCCATCCTTATATAGATGGAGGAAGGACCCAGTCTAATCTTATCCAACCGACTCTA 120
consensus_1000#1      ------------------------------------------------------------
                                                                                  

consensus_1000#0      TCCTTATCCCTAGGGCCTCGACCTCTCGGCCTACTACCTATGACACTACATCCCTCCTTT 180
consensus_1000#1      ------------------------------------------------------------
                                                                                  

consensus_1000#0      CGAGCAGCTCATACGACTTTCTAAATAAAACCTAACATAACTTAAGCCTTTTACATCTCG 240
consensus_1000#1      ------------------------------------------------------------
                                                                                  

consensus_1000#0      GCTTGTTACTTTATTGCAAAAAATTGAAAGGGTAAATAAATCAAAGATTATGATGCACCA 300
consensus_1000#1      ------------------------------------------ATACGCTACGTAACGGCA 18
                                                                * *   ** *   *  **

consensus_1000#0      CCATACTATCTCGCTGATAACACATGCAGGTGGACCCCATCCAAAAGCTTTGAGAGAAAG 360
consensus_1000#1      TGACATTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT------TTT 72
                        * * *   *   *  *      *     *        *        ***         

consensus_1000#0      GATAAGTCCACAGCACGTTGCAAGCTTGATTGCATATCTGATCTGTTTTCCAAGGTTAGC 420
consensus_1000#1      TTTAAGCCCACAGCACGTTGCAAGCTTGATTGCATATCTGATCTGTTTTCCAAGGTTAGC 132
                        **** *****************************************************

consensus_1000#0      CCCACCTGGCCAACACAACAGCCAAGACATGGGCTGCCACACTTGAAGCCCAGTCCACTG 480
consensus_1000#1      CCCACCTGGCCAACACAACAGCCAAAACATGGGCTGCCACACTTTAAGCCCAGTCCACGG 192
                      ************************* ****************** ************* *

consensus_1000#0      GAACAGCCCAAAAGAAAGGTTATGTTGGCCCATTAAAAACAGAGGCGAACATCCTATCCG 540
consensus_1000#1      GAACAGCCCAAAAAAAAGGTTATGTTGGCCCATTAAAAACAGAGGCGAACATCCTATCCG 252
                      ************* **********************************************

consensus_1000#0      CAGCTCCTCTCTGCCGCAGCGCAGCCAATCGACGATGACACGGTAAAAACGGCGCTGCTG 600
consensus_1000#1      CAGCTCCTTTTTGCCGCAGCGCAGCCAATCGACGATGACACGGTAAAAACGGCGCTGCTG 312
                      ******** * *************************************************

consensus_1000#0      TGCTTCCTTCTTATCCAAGCCGCGAACACCGCGCGGGCGCCGGCCATCCACCGCACCAAC 660
consensus_1000#1      GGCTTCCTTTTTATCCAAGCCGGGAACACCGCGCGGGCGCCGGCCATCCACCGAACCAAC 372
                       ******** ************ ****************************** ******

consensus_1000#0      CACCGCCGCCGAAATCAGCTCCGAAGCTGCCGCATCATGATCTCGCGGAAATCGCGCCAC 720
consensus_1000#1      CACCGGCGCCGAAATAAGCTCCGAAGCTGCCGCATCATGATCTCGCGGAAATCGCGCCAC 432
                      ***** ********* ********************************************

consensus_1000#0      CCACAACTGTCGGGGCAT------------------------------- 738
consensus_1000#1      CCACAACTGTCGGGGCATGAGGGCATTTCCCGTAAGCTCAAATCGAGCC 481
                      ******************