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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10047#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1372 fasta sequence
[CGTCGTCTCCTCCGCTCCTTGAGCCATCTCGCGGCCGAACAGGGGAGGGGGCGCCGATCTCCATCTGGCGAGAAGAGCAGGGGAGGGGATCCTGGTGAGGACTACAAAGGAGGGATTCAAGTTTGAGTCTGGATTAAGTTGGCAGCATGTCGTCAAACAAGATAGAGCTTGACCACAAGGACATGGTCCATGATTCTGCCATCGACTACTACGGGAAGAGCCTTGCCACAGCCTCCTCAGACTCCACCGTGCAGATCAGCAGCATTGGAGGTGCATCCGCGCCATCCCAGCTGCTTGCAACCCTCAGCGGACACTATGGACCTGTGTGGCGTGTTGCATGGGCCCATCCCAAGTTTGGTTCGATTCTTGCATCCTGCGGCTACGATGGCCGTGTCGTAG-TTTGGAAGG-AGGGTGCAGCTGGGCAATGGTC-TCAGGCTCACGTA-TTCGACAACCACAAGTCTTCACTCAACTCCATTGCTTGGGCTCCGTATGAGCTTGGCCTTTGCCTTGCCTGTGGCTCTTCCGACGGGAGCATCTCTGTCATGACCATGCGCCCGGATGGAGGATGGGACTCCACAACAATTGAGCAAGCACACCCTGTTGGGGTGATGGCAGTCTCATGGGCTCCAGCAACCGCACTCGGTTCCATTGTTGGCTCAGGGGAACTTGTCCAGAAGCTCGTCTCT-GGTGGCTTCGACTGTGTTGTCAAGGTGTGGGCTTTTGT-CAATGGCAGCTGGAAGCTGGATAGCGTTCTG-CCCTCCGACATGCACACGGACTGCGTTAGAGATGTATCCTGGGCACCTGTTTTGGGCCTCGCAAAGTTTACAATCGCCAGTGCCTCTGAAGACGGTAAGGTTGTCATCTGGACCAAGGGGAAAGAGGGCGACAAATGGGAAGGGAAGGTGATGCATGACTTCGAGGCTCCGGCATGGAGGGTGTCCTGGTCACTGACCGGAAACATACTGTCCGTGGCGGCCGGCTCCGGCGATATCACACTGTGGAAGGAGGCATCAGATGGTCAGTGGGAGAAGGTGACCAAGGTGGAGCCAT-AGGAAGCCTCGGCTGTGGCCTGCAGTTTGCATCTCATATCAGATTCAGTCAGATACATGTTTCTAGTAGCAATGGAATCCACGAGTGTACTGATAGATACTCAAATTCTCACTTGTTATCATCATCATCTTT-GGATGGATGTTGTTCTTACCTGAACAGAGTTGTGCTGTGTCTGTTTAGACCTGTAATTTACTGGTGCAATGGTGGTTTCTTAGTACTGTCAAATGAGACATCAGACATCTATGAGACGATTATAGTCTAGTTTCTTCCTTGCGCTTTGACATAGTTGAATAAAGCAATTTCTTATCCAAAAAAAAAAAAA]
[+] EMBL AK103569 [CGTCGTCTCCTCCGCTCCTTGAGCCATCTCGCGGCCGAACAGGGGAGGGGGCGCCGATCTCCATCTGGCGAGAAGAGCAGGGGAGGGGATCCTGGTGAGGACTACAAAGGAGGGATTCAAGTTTGAGTCTGGATTAAGTTGGCAGCATGTCGTCAAACAAGATAGAGCTTGACCACAAGGACATGGTCCATGATTCTGCCATCGACTACTACGGGAAGAGCCTTGCCACAGCCTCCTCAGACTCCACCGTGCAGATCAGCAGCATTGGAGGTGCATCCGCGCCATCCCAGCTGCTTGCAACCCTCAGCGGACACTATGGACCTGTGTGGCGTGTTGCATGGGCCCATCCCAAGTTTGGTTCGATTCTTGCATCCTGCGGCTACGATGGCCGTGTCGTAG TTTGGAAGG AGGGTGCAGCTGGGCAATGGTC TCAGGCTCACGTA TTCGACAACCACAAGTCTTCACTCAACTCCATTGCTTGGGCTCCGTATGAGCTTGGCCTTTGCCTTGCCTGTGGCTCTTCCGACGGGAGCATCTCTGTCATGACCATGCGCCCGGATGGAGGATGGGACTCCACAACAATTGAGCAAGCACACCCTGTTGGGGTGATGGCAGTCTCATGGGCTCCAGCAACCGCACTCGGTTCCATTGTTGGCTCAGGGGAACTTGTCCAGAAGCTCGTCTCT GGTGGCTTCGACTGTGTTGTCAAGGTGTGGGCTTTTGT CAATGGCAGCTGGAAGCTGGATAGCGTTCTG CCCTCCGACATGCACACGGACTGCGTTAGAGATGTATCCTGGGCACCTGTTTTGGGCCTCGCAAAGTTTACAATCGCCAGTGCCTCTGAAGACGGTAAGGTTGTCATCTGGACCAAGGGGAAAGAGGGCGACAAATGGGAAGGGAAGGTGATGCATGACTTCGAGGCTCCGGCATGGAGGGTGTCCTGGTCACTGACCGGAAACATACTGTCCGTGGCGGCCGGCTCCGGCGATATCACACTGTGGAAGGAGGCATCAGATGGTCAGTGGGAGAAGGTGACCAAGGTGGAGCCAT AGGAAGCCTCGGCTGTGGCCTGCAGTTTGCATCTCATATCAGATTCAGTCAGATACATGTTTCTAGTAGCAATGGAATCCACGAGTGTACTGATAGATACTCAAATTCTCACTTGTTATCATCATCATCTTT GGATGGATGTTGTTCTTACCTGAACAGAGTTGTGCTGTGTCTGTTTAGACCTGTAATTTACTGGTGCAATGGTGGTTTCTTAGTACTGTCAAATGAGACATCAGACATCTATGAGACGATTATAGTCTAGTTTCTTCCTTGCGCTTTGACATAGTTGAATAAAGCAAT ]
[+] EMBL C26353 [ TCCTCCGCTCCTTGAGCCATCTCGCGGCCGAACAGGGGAGGGGGCGCCGATCTCCATCTGGCGAGAAGAGCAGGGGAGGGGATCCT GGACTACAAAGGAGGGATTCAAGTTTGAGTCTGGATTAAGTTGGCAGCATGTCGTCAAACAAGATAGAGCTTGACCACAAGGACATGGTCCATGATTCTGCCATCGACTACTACGGGAAGAGCCTTGCCACAGCCTCCTCAGACTCCACCGTGCAGATCAGCAGCATTGGAGGTGCATCCGCGCCATCCCAGCTGCTTGCAACCCTCAGCGGACACTATGGACCTGTGTGGCGTGTTGCATGGGCCCATCCCAAGTTTGGTTCGATTCTTGCATCCTGCGGCTACGATGGCCGTGTCGTAGTTTTGGAAGGAAGGGTGCAGCTGGGCAATGGTCTTAAGGCTCACGTATTTCGA ]
[+] EMBL OSC28161 [ AGGGGATCCTGGTGAGGACTACAAAGGAGGGATTCAAGTTTGAGTCTGGATTAAGTTGGCAGCATGTCGTCAAACAAGATAGAGCTTGACCACAAGGACATGGTCCATGATTCTGCCATCGACTACTACGGGAAGAGCCTTGCCACAGCCTCCTCAGACTCCACCGTGCAGATCAGCAGCATTGGAGGTGCATCCGCGCCATCCCAGCTGCTTGCAACCCTCAGCGGACACTATGGACCTGTGTGGCGTNTTGCATGGGCCCATCCCAAGTTTGGTTCGATTCTTGCATCCTGCGGCTACGATGGCCGTGTCGTAG TTTGGNAGG AGGGTTCAGCTGGGCAATGGTC TCAGGCTCACGTA TTCGACAACCACAAG ]
[+] EMBL AU081239 [ TCTCTGGGTGGCTCCGACTGTGTTGTCAAGGTGTGGNCTTTTGTCCAATGNCAGCTGGAAGCTGGATAGCGTTCTGCCCCTCCGACATGCACACGGA TGCGTTAGAGATGTATCCTGGGCACCTGTTTTGGGCCTCGCAAAGTTTACAATCGCCAGTGCCTCTGAAGACGGTAAGGTTGTCATCTGGACCAAGGGGAAAGAGGGCGACAAATGGGAAGGGAAGGTGATGCATGACTTCGAGGCTCCGGCATGGAGGGTGTCCTGGTCACTGACCGGAAACATACTGTCCGTGGCGGCCGGCTCCGGCGATATCACACTGTGGAAGGAGGCATCAGATGGTCAGTGGGAGAAGGTGACCAAGGTGGAGCCAT AGGAAGCCTCGGCTGTGGCCTGCAGTTTGCATCTCATATCAGATTCAGTCAGATACATGTTTCTAGTAGCAATGGAATCCACGAGTGTACTGATAGATACTCAAATTCTCACTTGTTATCATCATCATCTTT GGATGGATGTTGTTCTTACCTGAACAGAGTTGTGCTGTGTCTGTTTAGACCTGTAATTTACTGGTGCAATGGTGGTTTCTTAGTACTGTCAAATGAGACATCAGACATCTATGAGACGATTATAGTCTAGTTTCTTCCTTGCGCTTTGACATAGTTGAATAAAGCAATTTCTTATCCAAAAAAAAAAAAA]
[+] EMBL AU077732 [ CTGGATAGCGTTCTG CNCTCCGACATGCACACGGACTGCGTTAGAGATGTATCCTGGGCACCTGTTTTGGGCCTCGCAAAGTTTACAATCGCCAGTGCCTCTGAAGACGGTAAGGTTGTCATCTGGACCAAGGGGAAAGAGGGCGACAAATGGGAAGGGAAGGTGATGCATGACTTCGAGGCTCCGGCATGGAGGGTGTCCTGGTCACTGACCGGAAACATACTGTCCGTGGCGGCCGGCTCCGGCGATATCACACTGTGGAAGGAGGCATCAGATGGTCAGTGGGAGAANGTGACCAAGGTGGAGCCATAAGGAAGCCTCGGCTGTGGCCTGCAGTTTTCATCTCATATCAGATTCAGTCAGATACATGTTTCTAGTAACAATGGAATCCACGAGTGTACTGATAGATACTCAAATTCTCACTTGTTATCATCATCATCTTTNGGATG ]
[+] EMBL AU077733 [ GACCAAGGGGAAAGAGGNCGACAAATGGGAAGGGAAGGTGATGCATGACTTCGAGGCTCCGGCATGGAGGGTGTCCTGGTCACTGACCGGAAACATACTGTCCGTGGCGGCCGGCTCCGGCGATATCACACTGTGGAAGGAGGCATCAGATGGTCAGTGGGAGAAGGTGACCAAGGTGGAGCCAT AGGAAGCCTCGGCTGTGGCCTGCAGTTTGCATCTCATATCAGATTCAGTCAGATACATGTTTCTAGTAGCAATGGAATCCACGAGTGTACTGATAGATACTCAAATTCTCACTTGTTATCATCATCATCTTT GGATGGATGTTGTTCTTACCTGAACAGAGTTGTGCTGTGTCTGTTTAGACCTGTAATTTACTGGTGCAATGGTGGTTTCTTAGTACTGTCAAATGAGACATCAGACATCTATGAGACGATTATAaaaa ]
consensusID : consensus_10047#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 396 fasta sequence
[TTGTCATCTGGACCAAGGGGAAAGAGGGCGACAATGGGAAGGGAAGTGATCATGACTTCGAGGCTCCGGCATGGAGGTTTCCTGGTCACTGACCGGTAAACATACTGTCCGTGCGCCGGCTCCGGCGATATCACCCTGTGGAAGGAGCATCAGATGTCAGTGGGAGAAGGTGTACCAAGGTGGACCATAGGAAGCCTCGCTGTGCCTCAGTTNGCATCTCATATCAGATTCAGTCAGATACATGTTTCTAGTACATGGAATCCCCGAGTGTACTGATAGATACCAATTCTCACTGGTTATCATCATCATCTTNGGATGGATGTTGTTCTTACCTGAACAGAGTTGTGTTGTGTCTGTTTAGACCTGTAATNTCCTGGCCATGGTGTTAAAAAAAAA]
[+] EMBL BM420668 [TTGTCATCTGGACCAAGGGGAAAGAGGGCGACAATGGGAAGGGAAGTGATCATGACTTCGAGGCTCCGGCATGGAGGTTTCCTGGTCACTGACCGGTAAACATACTGTCCGTGCGCCGGCTCCGGCGATATCACCCTGTGGAAGGAGCATCAGATGTCAGTGGGAGAAGGTGTACCAAGGTGGACCATAGGAAGCCTCGCTGTGCCTCAGTTNGCATCTCATATCAGATTCAGTCAGATACATGTTTCTAGTACATGGAATCCCCGAGTGTACTGATAGATACCAATTCTCACTGGTTATCATCATCATCTTNGGATGGATGTTGTTCTTACCTGAACAGAGTTGTGTTGTGTCTGTTTAGACCTGTAATNTCCTGGCCATGGTGTTAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10047#0 CGTCGTCTCCTCCGCTCCTTGAGCCATCTCGCGGCCGAACAGGGGAGGGGGCGCCGATCT 60
consensus_10047#1 ------------------------------------------------------------
consensus_10047#0 CCATCTGGCGAGAAGAGCAGGGGAGGGGATCCTGGTGAGGACTACAAAGGAGGGATTCAA 120
consensus_10047#1 ------------------------------------------------------------
consensus_10047#0 GTTTGAGTCTGGATTAAGTTGGCAGCATGTCGTCAAACAAGATAGAGCTTGACCACAAGG 180
consensus_10047#1 ------------------------------------------------------------
consensus_10047#0 ACATGGTCCATGATTCTGCCATCGACTACTACGGGAAGAGCCTTGCCACAGCCTCCTCAG 240
consensus_10047#1 ------------------------------------------------------------
consensus_10047#0 ACTCCACCGTGCAGATCAGCAGCATTGGAGGTGCATCCGCGCCATCCCAGCTGCTTGCAA 300
consensus_10047#1 ------------------------------------------------------------
consensus_10047#0 CCCTCAGCGGACACTATGGACCTGTGTGGCGTGTTGCATGGGCCCATCCCAAGTTTGGTT 360
consensus_10047#1 ------------------------------------------------------------
consensus_10047#0 CGATTCTTGCATCCTGCGGCTACGATGGCCGTGTCGTAGTTTGGAAGGAGGGTGCAGCTG 420
consensus_10047#1 ------------------------------------------------------------
consensus_10047#0 GGCAATGGTCTCAGGCTCACGTATTCGACAACCACAAGTCTTCACTCAACTCCATTGCTT 480
consensus_10047#1 ------------------------------------------------------------
consensus_10047#0 GGGCTCCGTATGAGCTTGGCCTTTGCCTTGCCTGTGGCTCTTCCGACGGGAGCATCTCTG 540
consensus_10047#1 ------------------------------------------------------------
consensus_10047#0 TCATGACCATGCGCCCGGATGGAGGATGGGACTCCACAACAATTGAGCAAGCACACCCTG 600
consensus_10047#1 ------------------------------------------------------------
consensus_10047#0 TTGGGGTGATGGCAGTCTCATGGGCTCCAGCAACCGCACTCGGTTCCATTGTTGGCTCAG 660
consensus_10047#1 ------------------------------------------------------------
consensus_10047#0 GGGAACTTGTCCAGAAGCTCGTCTCTGGTGGCTTCGACTGTGTTGTCAAGGTGTGGGCTT 720
consensus_10047#1 ------------------------------------------------------------
consensus_10047#0 TTGTCAATGGCAGCTGGAAGCTGGATAGCGTTCTGCCCTCCGACATGCACACGGACTGCG 780
consensus_10047#1 ------------------------------------------------------------
consensus_10047#0 TTAGAGATGTATCCTGGGCACCTGTTTTGGGCCTCGCAAAGTTTACAATCGCCAGTGCCT 840
consensus_10047#1 ------------------------------------------------------------
consensus_10047#0 CTGAAGACGGTAAGGTTGTCATCTGGACCAAGGGGAAAGAGGGCGACAAATGGGAAGGGA 900
consensus_10047#1 ---------------TTGTCATCTGGACCAAGGGGAAAGAGGGCGACAA-TGGGAAGGGA 44
********************************** **********
consensus_10047#0 AGGTGATGCATGACTTCGAGGCTCCGGCATGGAGGGTGTCCTGGTCACTGACCGG-AAAC 959
consensus_10047#1 AG-TGAT-CATGACTTCGAGGCTCCGGCATGGAGGTT-TCCTGGTCACTGACCGGTAAAC 101
** **** *************************** * ***************** ****
consensus_10047#0 ATACTGTCCGTGGCGGCCGGCTCCGGCGATATCACACTGTGGAAGGAGGCATCAGATGGT 1019
consensus_10047#1 ATACTGTCCGTGC--GCCGGCTCCGGCGATATCACCCTGTGGAAGGAG-CATCAGATG-T 157
************ ******************** ************ ********* *
consensus_10047#0 CAGTGGGAGAAGGTG-ACCAAGGTGGAGCCATAGGAAGCCTCGGCTGTGGCCTGCAGTTT 1078
consensus_10047#1 CAGTGGGAGAAGGTGTACCAAGGTGGA-CCATAGGAAGCCTCG-CTGTG--CCTCAGTTN 213
*************** *********** *************** ***** * *****
consensus_10047#0 GCATCTCATATCAGATTCAGTCAGATACATGTTTCTAGTAGCAATGGAATCCACGAGTGT 1138
consensus_10047#1 GCATCTCATATCAGATTCAGTCAGATACATGTTTCTAGTAC--ATGGAATCCCCGAGTGT 271
**************************************** ********* *******
consensus_10047#0 ACTGATAGATACTCAAATTCTCACTTGTTATCATCATCATCTTTGGATGGATGTTGTTCT 1198
consensus_10047#1 ACTGATAGATACC--AATTCTCACTGGTTATCATCATCATCTTNGGATGGATGTTGTTCT 329
************ ********** ***************** ****************
consensus_10047#0 TACCTGAACAGAGTTGTGCTGTGTCTGTTTAGACCTGTAATTTACTGGTGCAATGGTGGT 1258
consensus_10047#1 TACCTGAACAGAGTTGTGTTGTGTCTGTTTAGACCTGTAATNTCCTGG--CCATGGTGTT 387
****************** ********************** * **** * ****** *
consensus_10047#0 TTCTTAGTACTGTCAAATGAGACATCAGACATCTATGAGACGATTATAGTCTAGTTTCTT 1318
consensus_10047#1 AAAAAAAAA--------------------------------------------------- 396
* *
consensus_10047#0 CCTTGCGCTTTGACATAGTTGAATAAAGCAATTTCTTATCCAAAAAAAAAAAAA 1372
consensus_10047#1 ------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||