cluster # 1007

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Oryza sativa
cluster # 1007 cluster # 1007 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1007#0 length = 680 sequences # 1

consensus_1007#1 length = 482 sequences # 1

consensusID : consensus_1007#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 680
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTAGGAACAATATAATGGTGGGTTAGATTAAGACGGCCATCTTACAAAGAAAATGCCATTTATTACTAAATTCCCTAAAATATTCTAAATGATATTTTAGTACTTTACCAAATAGGGCTACAATATTCAAAACACAAATGGGGGCTGTTGGCATCAAATAATTATTAGGGGTAATGGATCAGCTGCCTATATTATACACATAATTATTTGTACCAATTTATACCAATTTACATGATATGTTAATAGGATAGGGGCACAGACCTGAGATGGCTATAACAATCATCACTGCTCCTGAAGTTCTCCAAGCATGCCCAACAAATGTGACTGCCACATTTACACTCGACATGGTTGCAACCATCAGCTTTCTCGATTGTAAAGTGGCAAGAAGGGCATACCTTCACATTCTCCTTCCCCTTGCGCCATTCAAGCAGAGTTGCATCAGGGTCTTCCTTGGATTCTTTGTATGCCTCACAGGATATGAAAGGATGATATTCAAGATGACACTTGTTGCAGATCTCCACAAAGCAAGCCCCACAGACGAAAGGTTTGCGTTCAGCATTTGCAGCACCCACTTGGTTAATGGATGGGCAATCCGGAGTAGGACAGACACGATATTTTCCCTGCTTAGAAGCACAAATGCTCTCAGGCGGGCCTTATAGCTCT]

[+] EMBL CA763229             [TTTTTTTTTTTTTTTTTTTAGGAACAATATAATGGTGGGTTAGATTAAGACGGCCATCTTACAAAGAAAATGCCATTTATTACTAAATTCCCTAAAATATTCTAAATGATATTTTAGTACTTTACCAAATAGGGCTACAATATTCAAAACACAAATGGGGGCTGTTGGCATCAAATAATTATTAGGGGTAATGGATCAGCTGCCTATATTATACACATAATTATTTGTACCAATTTATACCAATTTACATGATATGTTAATAGGATAGGGGCACAGACCTGAGATGGCTATAACAATCATCACTGCTCCTGAAGTTCTCCAAGCATGCCCAACAAATGTGACTGCCACATTTACACTCGACATGGTTGCAACCATCAGCTTTCTCGATTGTAAAGTGGCAAGAAGGGCATACCTTCACATTCTCCTTCCCCTTGCGCCATTCAAGCAGAGTTGCATCAGGGTCTTCCTTGGATTCTTTGTATGCCTCACAGGATATGAAAGGATGATATTCAAGATGACACTTGTTGCAGATCTCCACAAAGCAAGCCCCACAGACGAAAGGTTTGCGTTCAGCATTTGCAGCACCCACTTGGTTAATGGATGGGCAATCCGGAGTAGGACAGACACGATATTTTCCCTGCTTAGAAGCACAAATGCTCTCAGGCGGGCCTTATAGCTCT]




>consensus_1007#0
TTTTTTTTTTTTTTTTTTTAGGAACAATATAATGGTGGGTTAGATTAAGACGGCCATCTT
ACAAAGAAAATGCCATTTATTACTAAATTCCCTAAAATATTCTAAATGATATTTTAGTAC
TTTACCAAATAGGGCTACAATATTCAAAACACAAATGGGGGCTGTTGGCATCAAATAATT
ATTAGGGGTAATGGATCAGCTGCCTATATTATACACATAATTATTTGTACCAATTTATAC
CAATTTACATGATATGTTAATAGGATAGGGGCACAGACCTGAGATGGCTATAACAATCAT
CACTGCTCCTGAAGTTCTCCAAGCATGCCCAACAAATGTGACTGCCACATTTACACTCGA
CATGGTTGCAACCATCAGCTTTCTCGATTGTAAAGTGGCAAGAAGGGCATACCTTCACAT
TCTCCTTCCCCTTGCGCCATTCAAGCAGAGTTGCATCAGGGTCTTCCTTGGATTCTTTGT
ATGCCTCACAGGATATGAAAGGATGATATTCAAGATGACACTTGTTGCAGATCTCCACAA
AGCAAGCCCCACAGACGAAAGGTTTGCGTTCAGCATTTGCAGCACCCACTTGGTTAATGG
ATGGGCAATCCGGAGTAGGACAGACACGATATTTTCCCTGCTTAGAAGCACAAATGCTCT
CAGGCGGGCCTTATAGCTCT

consensusID : consensus_1007#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 482
fasta sequence

                              [TTTTTTTTTTTTTTGTTGGCATCAGATAATTATTAGTGGTAATGGATCAGCTGCCTATATTATACACATAATTATTTGTACCAATTTATACAAATTTACATGATATGTTAATAGGATAGGTGCACAGATTTTTTATGGCTATAACAATCATCACTGCTCCTGAAGTTCTCCAAGCATGCCCAACAAATGTGACTGCCACATTTACACTCGACATGGTTGCAACCATCAGCTTTCTCGATTGTAAAGTGGCAAGAAGGGCATACCTTCACATTCTCCTTCCCCTTGCGCCATTCAAGCAGAGTTGCATCAGGGTCTTCCTTGTATTCTTTGTATGCCTCACAGGATATGAAAGGATGATATTCAAGATGACACTTGTTGCAGATCTCCACAAAGCAAGCCCCACAGACAAAAGGTTTGCTTTCAGCATCTGCAGCAGCCACTTGGTAAATGGATGGGCAATCAGGAGTAGGACAGAAACGATA]

[+] EMBL CF326006             [TTTTTTTTTTTTTTGTTGGCATCAGATAATTATTAGTGGTAATGGATCAGCTGCCTATATTATACACATAATTATTTGTACCAATTTATACAAATTTACATGATATGTTAATAGGATAGGTGCACAGATTTTTTATGGCTATAACAATCATCACTGCTCCTGAAGTTCTCCAAGCATGCCCAACAAATGTGACTGCCACATTTACACTCGACATGGTTGCAACCATCAGCTTTCTCGATTGTAAAGTGGCAAGAAGGGCATACCTTCACATTCTCCTTCCCCTTGCGCCATTCAAGCAGAGTTGCATCAGGGTCTTCCTTGTATTCTTTGTATGCCTCACAGGATATGAAAGGATGATATTCAAGATGACACTTGTTGCAGATCTCCACAAAGCAAGCCCCACAGACAAAAGGTTTGCTTTCAGCATCTGCAGCAGCCACTTGGTAAATGGATGGGCAATCAGGAGTAGGACAGAAACGATA]




>consensus_1007#1
TTTTTTTTTTTTTTGTTGGCATCAGATAATTATTAGTGGTAATGGATCAGCTGCCTATAT
TATACACATAATTATTTGTACCAATTTATACAAATTTACATGATATGTTAATAGGATAGG
TGCACAGATTTTTTATGGCTATAACAATCATCACTGCTCCTGAAGTTCTCCAAGCATGCC
CAACAAATGTGACTGCCACATTTACACTCGACATGGTTGCAACCATCAGCTTTCTCGATT
GTAAAGTGGCAAGAAGGGCATACCTTCACATTCTCCTTCCCCTTGCGCCATTCAAGCAGA
GTTGCATCAGGGTCTTCCTTGTATTCTTTGTATGCCTCACAGGATATGAAAGGATGATAT
TCAAGATGACACTTGTTGCAGATCTCCACAAAGCAAGCCCCACAGACAAAAGGTTTGCTT
TCAGCATCTGCAGCAGCCACTTGGTAAATGGATGGGCAATCAGGAGTAGGACAGAAACGA
TA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1007#0      TTTTTTTTTTTTTTTTTTTAGGAACAATATAATGGTGGGTTAGATTAAGACGGCCATCTT 60
consensus_1007#1      ------------------------------------------------------------
                                                                                  

consensus_1007#0      ACAAAGAAAATGCCATTTATTACTAAATTCCCTAAAATATTCTAAATGATATTTTAGTAC 120
consensus_1007#1      ------------------------------------------------------------
                                                                                  

consensus_1007#0      TTTACCAAATAGGGCTACAATATTCAAAACACAAATGGGGGCTGTTGGCATCAAATAATT 180
consensus_1007#1      -----------------------------TTTTTTTTTTTTTTGTTGGCATCAGATAATT 31
                                                         *      *********** ******

consensus_1007#0      ATTAGGGGTAATGGATCAGCTGCCTATATTATACACATAATTATTTGTACCAATTTATAC 240
consensus_1007#1      ATTAGTGGTAATGGATCAGCTGCCTATATTATACACATAATTATTTGTACCAATTTATAC 91
                      ***** ******************************************************

consensus_1007#0      CAATTTACATGATATGTTAATAGGATAGGGGCACAGACCTGAGATGGCTATAACAATCAT 300
consensus_1007#1      AAATTTACATGATATGTTAATAGGATAGGTGCACAGATTTTTTATGGCTATAACAATCAT 151
                       **************************** *******  *   *****************

consensus_1007#0      CACTGCTCCTGAAGTTCTCCAAGCATGCCCAACAAATGTGACTGCCACATTTACACTCGA 360
consensus_1007#1      CACTGCTCCTGAAGTTCTCCAAGCATGCCCAACAAATGTGACTGCCACATTTACACTCGA 211
                      ************************************************************

consensus_1007#0      CATGGTTGCAACCATCAGCTTTCTCGATTGTAAAGTGGCAAGAAGGGCATACCTTCACAT 420
consensus_1007#1      CATGGTTGCAACCATCAGCTTTCTCGATTGTAAAGTGGCAAGAAGGGCATACCTTCACAT 271
                      ************************************************************

consensus_1007#0      TCTCCTTCCCCTTGCGCCATTCAAGCAGAGTTGCATCAGGGTCTTCCTTGGATTCTTTGT 480
consensus_1007#1      TCTCCTTCCCCTTGCGCCATTCAAGCAGAGTTGCATCAGGGTCTTCCTTGTATTCTTTGT 331
                      ************************************************** *********

consensus_1007#0      ATGCCTCACAGGATATGAAAGGATGATATTCAAGATGACACTTGTTGCAGATCTCCACAA 540
consensus_1007#1      ATGCCTCACAGGATATGAAAGGATGATATTCAAGATGACACTTGTTGCAGATCTCCACAA 391
                      ************************************************************

consensus_1007#0      AGCAAGCCCCACAGACGAAAGGTTTGCGTTCAGCATTTGCAGCACCCACTTGGTTAATGG 600
consensus_1007#1      AGCAAGCCCCACAGACAAAAGGTTTGCTTTCAGCATCTGCAGCAGCCACTTGGTAAATGG 451
                      **************** ********** ******** ******* ********* *****

consensus_1007#0      ATGGGCAATCCGGAGTAGGACAGACACGATATTTTCCCTGCTTAGAAGCACAAATGCTCT 660
consensus_1007#1      ATGGGCAATCAGGAGTAGGACAGAAACGATA----------------------------- 482
                      ********** ************* ******                             

consensus_1007#0      CAGGCGGGCCTTATAGCTCT 680
consensus_1007#1      --------------------