cluster # 10104

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Oryza sativa
cluster # 10104 cluster # 10104 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10104#0 length = 548 sequences # 5

consensus_10104#1 length = 468 sequences # 1
consensus_10104#2 length = 399 sequences # 1

consensusID : consensus_10104#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 548
fasta sequence

                              [AAAAAATGTGGAAGATGATGAAGAGTTTAACACAGAGACATCTCCTGAGCCGAGCATGGAAACAACAGATTCTCATGGACAGCCTGATCCTTCTGCTGATGGGGAGCGCTTTGAACTGCGCCGCAGGGAGAACCCTAAGATTGATGAGAAACGTGACATGCCACCTAATTAACGCTTGTGCCGAGTTGAAGGGAAAATTTCTGAAGGATTTTTGTTGTAGGATCAGATTGCTGTTTTGTTTCACTTTACCTTTGCATCGTCTCTAGAGACTGATGCGCTATGCTAGCGCATTGAATATCTTCTTTTTTTATACTGTTAGCAATTTGAATTGCTCTTTCTTAGGTGAAGTGATCACGGGTCACTTCCGGGCATCCTTGATGTCCGATAAATTAGAGAAATGATATTATTTTATTATTCACTGTCGTCATAGGAGTACTGAGTACACCAGTTTGTTGCTCACATTAGAACCCATTACAACTGTAAAGACTGGAGTAATATTTTTAATAGTTGGTAGAATTGGTTATATGGCATCGAAAGTTGGTTAAAAA]

[+] EMBL AU108283             [AAAAAATGTGGAAGATGATGAAGAG TTAACACAGAGACATCTCCTGACCCGAGCATGGAAACAACAGATTCTCATGGACAGCCTGATCCTTCTGCTGATGGGGAGCGCTTTGAACTGCGCCGCAGGGAGAACCCTAAGATTGATGAGAAACGTGACATGCCACCTAATTAACGCTTGTGCCGAGTTGAAGGGAAAATTTCTGAAGGATTTTTGTTGTAGGATCAGATTGCTGTTTTGTTTCACTTTACCTTTGCATCGTCTCTAGAGACTGATGCGCTATG TAGCGCATTGAATATCTTCTTTTTTTATACTGTTAGCAATTTGAATTGCTCTTTCTTAGGTGAAGTGATCACGGGTCACTTCCGGGCATCCTTGATGTCCGATAAATTAGAGAAATGATATTATTTTATTATTCACTGTCGTCATAGGAGTACTGAGTACACCAGTTTGTTGCTCACATTAGAACCCATTACAACTGTAAAGACTGGAGTAATATTTTTAATAGTTGGTAGAATTGGTTATATGGCATCGAAAGTTGGTTAAAAA]
[+] EMBL AU101173             [ AAAAATGTGGAAGATGATGAAGAG TTAACACAGAGACATCTCCTGAGCCGAGCATGGAAACAACAGATTCTCATGGACAGCCTGATCCTTCTGCTGATGGGGAGCGCTTTGAACTGCGCCGCAGGGAGAACCCTAAGATTGATGAGAAACGTGACATGCCACCTAATTAACGCTTGTGCCGAGTTGAAGGGAAAATTTCTGAAGGATTTTTGTTGTAGGATCAGATTGCTGTTTTGTTTCACTTTACCTTTGCATCGTCTCTAGAGACTGATGCGCTATGCTAGCGCATTGAATATCTTCTTTTTTTATACTGTTAGCAATTTGAATTGCTCTTTCTTAGGTGAAGTGATCACGGGTCACTTCCGGGCATCCTTGATGTCCGATAAATTAGAGAAATGATATTATTTTATTATTCACTGTCGTCATAGGAGTACTGAGTACACCAGTTTGTTGCTCACATTAGAACCCATTACAACTGTAAAGACTGGAGTAATATTTTTAATAGTTGGTAGAATTGGTTATATGGCATCGAAAGTTGGTTAAAAA]
[+] EMBL CB668337             [ AAAAATGTGGAACATGATGAAGAGTTTAGCACCGAGACATCTCCTGAGCCGAGCATGGAAACAACAGATTCTCATGGACAGCCTGATCCTTCTGCTGATGGGGAGCGCTTTGAACTGCGCCGCAGGGAGAACCCTAAGATTGATGAGAAACGTGACATGCCACCTAATTAACGCTTGTGCCGAGTAGAAGGGAAAATTTCTGAAGGATTTTTG                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CB660190             [  AAAATGTGGAAGATGATGAAGAGTTTAACACAGAGACATCTCCTGAGCCGAGCATGGAAACAACAGATTCTCATGGACAGCCTGATCCTTCTGCTGATGGGGAGCGCTTTGAACTGCGCCGCAGGGAGAACCCTAAGATTGATGAGAAACGTGACATGCCACCTAATTAACGCTTGTGCCGAGTTGAAGGGAAAATTTCTGAAGGATTTTTGTTGTAGGATCAGATTGCTGTTTTGTTTCACTTTACCTTTGCATCGTCTCTAGAGACTGATGCGCTATGCTAGCGCATTGAATATCTTCTTTTTTTATACTGTTAGCAATTTGAATTGCTCTTTCTTAGGTGAAGTGATCACGGGTCACTTCCGGGCATCCTTGATGTCCGATAAATTAGAGAAATGATATTATTTTATTATTCACTGTCGTCATAGGAGTACTGAGTACACCAGTTTGTTGCTCACATTAGAACCCATTACAACTGTAAAGACTGGAGTAATATTTTTAATAGTTGGTAGAATTGGTTATATGGCATCGAAAGTTGGTTAt   ]
[-] EMBL CB630861             [  AAAATGTGGAAGATGATGAAGAGTTTAACACAGAGACATCTCCTGAGCCGAGCATGGAAACAACAGATTCTCATGGACAGCCTGATCCTTCTGCTGATGGGGAGCGCTTTGAACTGCGCCGCAGGGAGAACCCTAAGATTGATGAGAAACGTGACATGCCACCTAATTAACGCTTGTGCCGAGTTGAAGGGAAAATTTCTGAAGGATTTTTGTTGTAGGATCAGATTGCTGTTTTGTTTCACTTTACCTTTGCATCGTCTCTAGAGACTGATGCGCTATGCTAGCGCATTGAATATCTTCTTTTTTTATACTGTTAGCAATTTGAATTGCTCTTTCTTAGGTGAAGTGATCACGGGTCACTTCCGGGCATCCTTGATGTCCGATAAATTAGAGAAATGATATTATTTTATTATTCACTGTCGTCATAGGAGTACTGAGTACACCAGTTTGTTGCTCACATTAGAACCCACTACAACTGTAAAGACTGGAGTAATATTTTTAATAGTTGGgta                                  ]




>consensus_10104#0
AAAAAATGTGGAAGATGATGAAGAGTTTAACACAGAGACATCTCCTGAGCCGAGCATGGA
AACAACAGATTCTCATGGACAGCCTGATCCTTCTGCTGATGGGGAGCGCTTTGAACTGCG
CCGCAGGGAGAACCCTAAGATTGATGAGAAACGTGACATGCCACCTAATTAACGCTTGTG
CCGAGTTGAAGGGAAAATTTCTGAAGGATTTTTGTTGTAGGATCAGATTGCTGTTTTGTT
TCACTTTACCTTTGCATCGTCTCTAGAGACTGATGCGCTATGCTAGCGCATTGAATATCT
TCTTTTTTTATACTGTTAGCAATTTGAATTGCTCTTTCTTAGGTGAAGTGATCACGGGTC
ACTTCCGGGCATCCTTGATGTCCGATAAATTAGAGAAATGATATTATTTTATTATTCACT
GTCGTCATAGGAGTACTGAGTACACCAGTTTGTTGCTCACATTAGAACCCATTACAACTG
TAAAGACTGGAGTAATATTTTTAATAGTTGGTAGAATTGGTTATATGGCATCGAAAGTTG
GTTAAAAA

consensusID : consensus_10104#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 468
fasta sequence

                              [CGCTTTGAACTGTCGCCGCCATGGGAGAACCCTAAGATTGATGAGGAAACGTNGACATGCCTACCTGAATTAACGCTTGGTGGCCGAGTGTGATAGGGAAAATGTTNCTGGAAGGATTTTTGTTGTGAGGATCAGATTGCTGGTGTGTTGGTGTTCACTGTTACCTTTGGCATCGTGCTCTGAGAGACTGATGCGGCTATGGCTGAGCGCATTGAATATCTTCTTTTTTTATAACTGTTAGCAATGTTGGAATTGCTCTTTCTTAGGTGAAGTGATCACGGGTCACTTCCGGGCATCCTTGATGTCCGATAAATTAGAGAAATGATATTATTTTATTATTCACTGTCGTCATAGGAGTACTGAGTACACCAGTTTGTTGCTCACATTAGAACCCACTACAACTGTAAAGACTGGAGTAATATTTTTAATAGTTGGGTAGAATTGGTTATATGGCATCGAAAAAAAAAA]

[+] EMBL BM421058             [CGCTTTGAACTGTCGCCGCCATGGGAGAACCCTAAGATTGATGAGGAAACGTNGACATGCCTACCTGAATTAACGCTTGGTGGCCGAGTGTGATAGGGAAAATGTTNCTGGAAGGATTTTTGTTGTGAGGATCAGATTGCTGGTGTGTTGGTGTTCACTGTTACCTTTGGCATCGTGCTCTGAGAGACTGATGCGGCTATGGCTGAGCGCATTGAATATCTTCTTTTTTTATAACTGTTAGCAATGTTGGAATTGCTCTTTCTTAGGTGAAGTGATCACGGGTCACTTCCGGGCATCCTTGATGTCCGATAAATTAGAGAAATGATATTATTTTATTATTCACTGTCGTCATAGGAGTACTGAGTACACCAGTTTGTTGCTCACATTAGAACCCACTACAACTGTAAAGACTGGAGTAATATTTTTAATAGTTGGGTAGAATTGGTTATATGGCATCGAAAAAAAAAA]




>consensus_10104#1
CGCTTTGAACTGTCGCCGCCATGGGAGAACCCTAAGATTGATGAGGAAACGTNGACATGC
CTACCTGAATTAACGCTTGGTGGCCGAGTGTGATAGGGAAAATGTTNCTGGAAGGATTTT
TGTTGTGAGGATCAGATTGCTGGTGTGTTGGTGTTCACTGTTACCTTTGGCATCGTGCTC
TGAGAGACTGATGCGGCTATGGCTGAGCGCATTGAATATCTTCTTTTTTTATAACTGTTA
GCAATGTTGGAATTGCTCTTTCTTAGGTGAAGTGATCACGGGTCACTTCCGGGCATCCTT
GATGTCCGATAAATTAGAGAAATGATATTATTTTATTATTCACTGTCGTCATAGGAGTAC
TGAGTACACCAGTTTGTTGCTCACATTAGAACCCACTACAACTGTAAAGACTGGAGTAAT
ATTTTTAATAGTTGGGTAGAATTGGTTATATGGCATCGAAAAAAAAAA

consensusID : consensus_10104#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 399
fasta sequence

                              [TGATGAGAAACGTGACATGCCACCTAATTAACGCTTGTGCCGAGTTGAAGGGAAAATTTCTGAAGGATTTTTGTTGTAGGATCAGATTGCTGTTNTGTTTCACTTTACCTTTGCATCGTCTCTAGAGACTGATGCGCTATGTAGCGCATTGAATATCTTCTTTTTTTATACTGTTAGCAATTTGAATTGCTCTTTCTTAGGTGAAGTGATCACGGGTCACTTCCGGGCATCCTTGATGTCCGATAAATTAGAGAAATGATATTATTTTATTATTCACTGTCGTCATAGGAGTACTGAGTACACCAGTTTGTTGCTCACATTAGAACCCATTACAACTGTAAAGACTGGAGTAATATTTTTAATAGTTGGTAGAATTGGTTATATGGCAAAAAAAAAAAA]

[+] EMBL AU056459             [TGATGAGAAACGTGACATGCCACCTAATTAACGCTTGTGCCGAGTTGAAGGGAAAATTTCTGAAGGATTTTTGTTGTAGGATCAGATTGCTGTTNTGTTTCACTTTACCTTTGCATCGTCTCTAGAGACTGATGCGCTATGTAGCGCATTGAATATCTTCTTTTTTTATACTGTTAGCAATTTGAATTGCTCTTTCTTAGGTGAAGTGATCACGGGTCACTTCCGGGCATCCTTGATGTCCGATAAATTAGAGAAATGATATTATTTTATTATTCACTGTCGTCATAGGAGTACTGAGTACACCAGTTTGTTGCTCACATTAGAACCCATTACAACTGTAAAGACTGGAGTAATATTTTTAATAGTTGGTAGAATTGGTTATATGGCAAAAAAAAAAAA]




>consensus_10104#2
TGATGAGAAACGTGACATGCCACCTAATTAACGCTTGTGCCGAGTTGAAGGGAAAATTTC
TGAAGGATTTTTGTTGTAGGATCAGATTGCTGTTNTGTTTCACTTTACCTTTGCATCGTC
TCTAGAGACTGATGCGCTATGTAGCGCATTGAATATCTTCTTTTTTTATACTGTTAGCAA
TTTGAATTGCTCTTTCTTAGGTGAAGTGATCACGGGTCACTTCCGGGCATCCTTGATGTC
CGATAAATTAGAGAAATGATATTATTTTATTATTCACTGTCGTCATAGGAGTACTGAGTA
CACCAGTTTGTTGCTCACATTAGAACCCATTACAACTGTAAAGACTGGAGTAATATTTTT
AATAGTTGGTAGAATTGGTTATATGGCAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10104#0      AAAAAATGTGGAAGATGATGAAGAGTTTAACACAGAGACATCTCCTGAGCCGAGCATGGA 60
consensus_10104#2      ------------------------------------------------------------
consensus_10104#1      ------------------------------------------------------------
                                                                                   

consensus_10104#0      AACAACAGATTCTCATGGACAGCCTGATCCTTCTGCTGATGGGGAGCGCTTTGAACTG-C 119
consensus_10104#2      ------------------------------------------------------------
consensus_10104#1      ----------------------------------------------CGCTTTGAACTGTC 14
                                                                                   

consensus_10104#0      GCCGCA--GGGAGAACCCTAAGATTGATGAG-AAACGTG-ACATGCC-ACCT-AATTAAC 173
consensus_10104#2      ------------------------TGATGAG-AAACGTG-ACATGCC-ACCT-AATTAAC 32
consensus_10104#1      GCCGCCATGGGAGAACCCTAAGATTGATGAGGAAACGTNGACATGCCTACCTGAATTAAC 74
                                               ******* ******  ******* **** *******

consensus_10104#0      GCTTGT--GCCGAGT-TGA-AGGGAAAATTTCT---GAAGGATTTTTGTTGT-AGGATCA 225
consensus_10104#2      GCTTGT--GCCGAGT-TGA-AGGGAAAATTTCT---GAAGGATTTTTGTTGT-AGGATCA 84
consensus_10104#1      GCTTGGTGGCCGAGTGTGATAGGGAAAATGTTNCTGGAAGGATTTTTGTTGTGAGGATCA 134
                       *****   ******* *** ********* *     **************** *******

consensus_10104#0      GATTGCTGTTTTGTT-----TCACT-TTACCTTTG-CATCGT-CTCT-AGAGACTGATGC 276
consensus_10104#2      GATTGCTGTTNTGTT-----TCACT-TTACCTTTG-CATCGT-CTCT-AGAGACTGATGC 135
consensus_10104#1      GATTGCTGGTGTGTTGGTGTTCACTGTTACCTTTGGCATCGTGCTCTGAGAGACTGATGC 194
                       ******** * ****     ***** ********* ****** **** ************

consensus_10104#0      G-CTATGCT--AGCGCATTGAATATCTTCTTTTTTTATA-CTGTTAGCAATTT--GAATT 330
consensus_10104#2      G-CTATG-T--AGCGCATTGAATATCTTCTTTTTTTATA-CTGTTAGCAATTT--GAATT 188
consensus_10104#1      GGCTATGGCTGAGCGCATTGAATATCTTCTTTTTTTATAACTGTTAGCAATGTTGGAATT 254
                       * *****    **************************** *********** *  *****

consensus_10104#0      GCTCTTTCTTAGGTGAAGTGATCACGGGTCACTTCCGGGCATCCTTGATGTCCGATAAAT 390
consensus_10104#2      GCTCTTTCTTAGGTGAAGTGATCACGGGTCACTTCCGGGCATCCTTGATGTCCGATAAAT 248
consensus_10104#1      GCTCTTTCTTAGGTGAAGTGATCACGGGTCACTTCCGGGCATCCTTGATGTCCGATAAAT 314
                       ************************************************************

consensus_10104#0      TAGAGAAATGATATTATTTTATTATTCACTGTCGTCATAGGAGTACTGAGTACACCAGTT 450
consensus_10104#2      TAGAGAAATGATATTATTTTATTATTCACTGTCGTCATAGGAGTACTGAGTACACCAGTT 308
consensus_10104#1      TAGAGAAATGATATTATTTTATTATTCACTGTCGTCATAGGAGTACTGAGTACACCAGTT 374
                       ************************************************************

consensus_10104#0      TGTTGCTCACATTAGAACCCATTACAACTGTAAAGACTGGAGTAATATTTTTAATAGTTG 510
consensus_10104#2      TGTTGCTCACATTAGAACCCATTACAACTGTAAAGACTGGAGTAATATTTTTAATAGTTG 368
consensus_10104#1      TGTTGCTCACATTAGAACCCACTACAACTGTAAAGACTGGAGTAATATTTTTAATAGTTG 434
                       ********************* **************************************

consensus_10104#0      G-TAGAATTGGTTATATGGCATCGAAAGTTGGTTAAAAA 548
consensus_10104#2      G-TAGAATTGGTTATATGGCAAAAAAAAAAAA------- 399
consensus_10104#1      GGTAGAATTGGTTATATGGCATCGAAAAA-----AAAAA 468
                       * *******************   ***