|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10141#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1120 fasta sequence
[TCCCGAACCCGAACCCGCACCCGCCTCGCTCGCACGCTGCCTCCTCCTCGTCGTCCTCCTCCTCCTCGCTGCTCCGCAAGTCCGCATCGCCTCCCCCCTCGATCCCATCTCGGATCGCCGCCGCCGCAGCAGCAGCCGGGTGGGGCTGCGCTTGGCGGGAGGGAGGGGAGGGTATAGGATAGGGGAGATGGGCGGGGCGGTCTCCGGCGGCGGCGCGGGGGCGGCGGGGGCGGGGGCGGGGGCGGAGGGGGAAGGGGCGTACACGGTGGTGCTGAATGTGTACGACCTCACGCCGCTCAACAACTACCTCCACTGGTGCGGCCTCGGGATCTTCCACTCCGCCGTCGAGGTCCATGGATCGGAGTACAGTTTTGGAGCTCATGATCACCCAACGAGTGGGGTTTTTGAGGTGGAACCAAAGTGCTGCCCAGGGTTCATGTACAGATGTTCAATTTTCATAGGCCGTACGAGTTTGAATCCCTTAGAATTTCGAGATTTCATTCAGAGAATGGCTTCAGAATACCATGGAGATACTTATCACCTCATTTCCAAAAACTGTAACCACTTTACGGATGATCTC-AGTACCAGA-TTG-ACAGGAAAA-CCGATTCCTGGCTGGGTTAACCGACTTGCGAAGCTAGGTGCCTTTTGCAACTGCCTTCTGCCAGAAAGCATGCGGTTGGAGTCAACTGGGACAAAGCACCTCGCGGACTGTCATTTCTCAGATGATTCCCACACATCCAGCAATGAGCATTTTGAAGATGAAGATCTTGAAGACAAGCACCTGCTTTCACAATCTTCTGTTTCTGAAGATGCAATTGTAAAGGAAGTTCACAGGTGACAAACTGCTGAGGCTATACAGAATAATTTGGTGTGTAGTTTGTCATTCATTTTGTACATTGTAATTCTGTATTCCAAAATTTAGTGCGCTCTTTGTATTCTAAGTTGATATTCATATTATTGTGGCCGGTTTATTGTCATGATTGATTTTGTTCATTCCATTTGTACAAACACTGTAATACCCTACCTACTGAGGCTCCTTATAGGTAGTCTGGAAGTCACTCTGCATGTGTACTCTTAAGTCT-TAAATTCGTTTC-TTGTAAAAATGTGAGTTCAAAGAGCG]
[+] EMBL AK103575 [TCCCGAACCCGAACCCGCACCCGCCTCGCTCGCACGCTGCCTCCTCCTCGTCGTCCTCCTCCTCCTCGCTGCTCCGCAAGTCCGCATCGCCTCCCCCCTCGATCCCATCTCGGATCGCCGCCGCCGCAGCAGCAGCCGGGTGGGGCTGCGCTTGGCGGGAGGGAGGGGAGGGTATAGGATAGGGGAGATGGGCGGGGCGGTCTCCGGCGGCGGCGCGGGGGCGGCGGGGGCGGGGGCGGGGGCGGAGGGGGAAGGGGCGTACACGGTGGTGCTGAATGTGTACGACCTCACGCCGCTCAACAACTACCTCCACTGGTGCGGCCTCGGGATCTTCCACTCCGCCGTCGAGGTCCATGGATCGGAGTACAGTTTTGGAGCTCATGATCACCCAACGAGTGGGGTTTTTGAGGTGGAACCAAAGTGCTGCCCAGGGTTCATGTACAGATGTTCAATTTTCATAGGCCGTACGAGTTTGAATCCCTTAGAATTTCGAGATTTCATTCAGAGAATGGCTTCAGAATACCATGGAGATACTTATCACCTCATTTCCAAAAACTGTAACCACTTTACGGATGATCTC AGTACCAGA TTG ACAGGAAAA CCGATTCCTGGCTGGGTTAACCGACCTGCGAAGCTAGGTGCCTTTTGCAACTGCCTTCTGCCAGAAAGCATGCGGTTGGAGTCAACTGGGACAAAGCACCTCGCGGACTGTCATTTCTCAGATGATTCCCGCACATCCAGCAATGAGCATTTTGAAGATGAAGATCTTGAAGACAAGCACCTGCTTTCACAATCTTCTGTTTCTGAAGATGCAATTGTAAAGGAAGTTCACAGGTGACAAACTGCTGAGGCTATACAGAATAATTTGGTGTGTAGTTTGTCATTCATTTTGTACATTGTAATTCTGTATTCCAAAATTTAGTGCGCTCTTTGTATTCTAAGTTGATATTCATATTATTGTGGCCGGTTTATTGTCATGATTAATTTTGTTCATTCCATTTGTACAAACACTGTAATACCCTACCTACTGAGGCTCCTTATAGGTAGTCTGGAAGTCACTCTGCATGTGTACTCTTAAGTCT TAAATT ]
[+] EMBL AK108074 [ CCGAACCCGAACCCGCACCCGCCTCGCTCGCACGCTGCCTCCTCCTCGTCGTCCTCCTCCTCCTCGCTGCTCCGCAAGTCCGCATCGCCTCCCCCCTCGATCCCATCTCGGATCGCCGCCGCCGCAGCAGCAGCCGGGTGGGGCTGCGCTTGGCGGGAGGGAGGGGAGGGTATAGGATAGGGGAGATGGGCGGGGCGGTCTCCGGCGGCGGCGCGGGGGCGGCGGGGGCGGGGGCGGGGGCGGAGGGGGAAGGGGCGTACACGGTGGTGCTGAATGTGTACGACCTCACGCCGCTCAACAACTACCTCCACTGGTGCGGCCTCGGGATCTTCCACTCCGCCGTCGAGGTCCATGGATCGGAGTACAGTTTTGGAGCTCATGATCACCCAACGAGTGGGGTTTTTGAGGTGGAACCAAAGTGCTGCCCAGGGTTCATGTACAGATGTTCAATTTTCATAGGCCGTACGAGTTTGAATCCCTTAGAATTTCGAGATTTCATTCAGAGAATGGCTTCAGAATACCATGGAGATACTTATCACCTCATTTCCAAAAACTGTAACCACTTTACGGATGATCTC AGTACCAGA TTG ACAGGAAAA CCGATTCCTGGCTGGGTTAACCGACCTGCGAAGCTAGGTGCCTTTTGCAACTGCCTTCTGCCAGAAAGCATGCGGTTGGAGTCAACTGGGACAAAGCACCTCGCGGACTGTCATTTCTCAGATGATTCCCGCACATCCAGCAATGAGCATTTTGAAGATGAAGATCTTGAAGACAAGCACCTGCTTTCACAATCTTCTGTTTCTGAAGATGCAATTGTAAAGGAAGTTCACAGGTGACAAACTGCTGAGGCTATACAGAATAATTTGGTGTGTAGTTTGTCATTCATTTTGTACATTGTAATTCTGTATTCCAAAATTTAGTGCGCTCTTTGTATTCTAAGTTGATATTCATATTATTGTGGCCGGTTTATTGTCATGATTAATTTTGTTCATTCCATTTGTACAAACACTGTAATACCCTACCTACTGAGGCTCCTTATAGGTAGTCTGGAAGTCACTCTGCATGTGTACTCTTAAGTCT TAAATTCGTTTC TTGTAAAAATGTGAGTTCAAAGAGCG]
[+] EMBL BI803338 [ AATGGCTTCAGAATACCATGGAGATACTTATCACCTCATTTCC AAAACTGTAACCACTTTACGGATGATCTCAAGTACCAGA TTG ACAGGAAAA CCGATTCCTGGCTGGGTTAACCGACTTGCGAAGCTAGGTGCCTTTTGCAACTGCCTTCTGCCAGAAAGCATGCGGTTGGAGTCAACTGGGACAAAGCACCTCGCGGACTGTCATTTCTCAGATGATTCCCACACATCCAGC ATGAGCATTTTGAAGATGAAGATCTTGAAGACAAGCACCTGCTTTCACAATCTTCTGTTTCTGAAGATGCAATTGTAAAGGAAGTTCACAGGTGACAAACTGCTGAGGCTATACAGAATAATTTGGTGTGTAGTTTGTCATTCATTTTGTACATTGTAATTCTGTATTCCAAAATTTAGTGCGCTCTTTGTATTCTAAGTTGATATTCATATTATTGTGGCCGGTTTATTGTCATGATTGATTTTGTTCATTCCATTTGTAC AAC CTGTAATACCCTACCTACTGAGGCTCCTTATAGGTAGTCTGGAAGTCACTCTGCATGTGTACTCTTAAGTCG TAAATTCGTTTC TTGTAAAAA ]
[+] EMBL BI803952 [ TCACCTCATTTCCAAAAACTGTAACCACTTTACGGATGATCTC AGTACCAGA TTG ACAGGAAAA CCGATTCCTGGCTGGGTTAACCGACTTGCGAAGCTAGGTGCCTTTTGCAACTGCCTTCTGCCAGAAAGCATGCGGTTGGAGTCAACTGGGAC AAGCACCTCGCGGACTGTCATTTCTCAGATGATTCCCACACATCCAGCAATGAGCATTTTGAAGATGAAGATCTTGAAGACAAGCACCTGCTTTCACAATCTTCTGTTTCTGAAGATGCAATTGTAAAGGAAGTTCACAGGTGACAAACTGCTGAGGCTATACAGAATAATTTGGTGTGTAGTTTGTCATTCATTTTGTACATTGTAATTCTGTATTCCAAAATTTAGTGCGCTCTTTGTATTCTAAGTTGATATTCATATTATTGTGGCCGGTTTATTGTCATGATTGATTTTGTTCATTCCATTTGTAC AACACTGTAATACCCTACCTACTGAGGCTCCTTATAGGTAGTCTGGAAGTCACTCTGCATGTGTACTCTTAAGTCT TAAATTCGTTTC TTGTAAAAA ]
[+] EMBL BI804297 [ ACTTTACGGATGATCTC AGTACCAGA TTG ACAGGAAAA CCGATTCCTGGCTGGG TAACCGACTTGCGAAGCTAGGTGCCTTTTGCAACTGCCTTCTGCCAGAAAGCAT CGGTTGGAGTCAACTGGGACAAAGCACCTCGCGGACTGTCATTTCTCAGATGATTCCCACACATCCAGCAATGAGCATTTTGAAGATGAAGATCTTGAAGACAAGCACCTGCTTTCACAATCTTCTGTTTCTGAAGATGCAATTGTAAAGGAAGTTCACAGGTGACAAACTGCTGAGGCTATACAGAATAATTTGGTGTGTAGTTTGTCATTCATTTTGTACATTGTAATTCTGTATTCC AAATTTAGTGCGCTCTTTGTATTCTAAGTTGATATTCATATTATTGTGGCCGGTTTATTGTCATGATTGATTTTGTTCATTCCATTTGTACAAACACTGTAATACCCTACCTACTGAGGCTCCTTATAGGTAGTCTGGAAGTCACTCTGCATGTGTACTCTTAAGTCTCTAAATTCGTTTCTTTGTAAAAA ]
[+] EMBL BI803499 [ cgC AGCACCAGAGTTGAACAGGAAAACCCGATTCCTGGCT GGTTAACCGACTTGCGAAGCTAGGTCCCTTTTGCAACTGCCTTCTGCCAGAAAGCAT CGGTTGGAGTCAACTGGGACAAAGCACCTCGCGGACTGTCATTTCTCAGATGATTCCCACACATCCAGC ATGAGCATTTTGAAGATGAAGATCTTGAAGACAAGCACCTGCTTTCACAATCTTCTGTTTCTGAAGATGC ATTGTAAAGGAAGTTCACAGGTGAC AACTGCTGAGGCTATACAGAATAATTTGGTGTGTAGTTTGTCATTCATTTTGTACATTGTAATTCTGTATTCCAAAATTTAGTGCGCTCTTTGTATTCTAAGTTGATATTCATATTATTGTGGCCGGTTTATTGTCATGATTGATTTTGTTCATTCCATTTGTAC AAC CTGTAATACCCTACCTACTGAGGCTCCTTATAGGTAGTCTGGAAGTCACTCTGCATGTGTACTCTTAAGTCT TAAATTCGTTTC TTGTAAAAA ]
consensusID : consensus_10141#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence
[TTCCCGGGCCTCTGGGCGCGTGTACACCCGACTTGGCAAAGGCATTAGGGCGCCTTTTGGCAAACTGGCCTTTTCTGCCAAGATAAGCATTGCCGGTTGGGAGTGCAACTTGGGACATAATGCAACCTGCGCGGGACTGGTCCATTTCCTCCTAGATGATTCCCCTACTACTATGCCTACGCCAATGGAGCCATGTCTCTCGAAGATGGCAAGATGCTTGAAGACCAAGCTACCTGGCTGTTGCGACCAATGCTTCTGGTTGTCTGTATAGATGCATATTGGTGAAAGGAAGTCTGCAACAGGTGGACCAAAGCTAGCTCGAGGCTAATGACAAGAATTAATCTTGGTGGTGTAGATTTCGTCAGTGCATGGTTGTACAATGTGTGAATGTCATGTATTCCCGAAATTTGAGTGCGCTCTGTTGTGATTGCTAAGCTGTGATATTCATGATTATTGTGGCCGGTTTATTGTCATGATTGATTTTCGTTGCATTCCATTTGTACAAACCCTGTAATACCCTACCTACTGAGGCTCCTTATAGGTAGCTCTGGAAGTCACTCTGCATGTGTACTCTTAAGTCTTAAATTCGTTTCTTGTAAAAA]
[+] EMBL BI803118 [TTCCCGGGCCTCTGGGCGCGTGTACACCCGACTTGGCAAAGGCATTAGGGCGCCTTTTGGCAAACTGGCCTTTTCTGCCAAGATAAGCATTGCCGGTTGGGAGTGCAACTTGGGACATAATGCAACCTGCGCGGGACTGGTCCATTTCCTCCTAGATGATTCCCCTACTACTATGCCTACGCCAATGGAGCCATGTCTCTCGAAGATGGCAAGATGCTTGAAGACCAAGCTACCTGGCTGTTGCGACCAATGCTTCTGGTTGTCTGTATAGATGCATATTGGTGAAAGGAAGTCTGCAACAGGTGGACCAAAGCTAGCTCGAGGCTAATGACAAGAATTAATCTTGGTGGTGTAGATTTCGTCAGTGCATGGTTGTACAATGTGTGAATGTCATGTATTCCCGAAATTTGAGTGCGCTCTGTTGTGATTGCTAAGCTGTGATATTCATGATTATTGTGGCCGGTTTATTGTCATGATTGATTTTCGTTGCATTCCATTTGTACAAACCCTGTAATACCCTACCTACTGAGGCTCCTTATAGGTAGCTCTGGAAGTCACTCTGCATGTGTACTCTTAAGTCTTAAATTCGTTTCTTGTAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10141#0 TCCCGAACCCGAACCCGCACCCGCCTCGCTCGCACGCTGCCTCCTCCTCGTCGTCCTCCT 60
consensus_10141#1 ------------------------------------------------------------
consensus_10141#0 CCTCCTCGCTGCTCCGCAAGTCCGCATCGCCTCCCCCCTCGATCCCATCTCGGATCGCCG 120
consensus_10141#1 ------------------------------------------------------------
consensus_10141#0 CCGCCGCAGCAGCAGCCGGGTGGGGCTGCGCTTGGCGGGAGGGAGGGGAGGGTATAGGAT 180
consensus_10141#1 ------------------------------------------------------------
consensus_10141#0 AGGGGAGATGGGCGGGGCGGTCTCCGGCGGCGGCGCGGGGGCGGCGGGGGCGGGGGCGGG 240
consensus_10141#1 ------------------------------------------------------------
consensus_10141#0 GGCGGAGGGGGAAGGGGCGTACACGGTGGTGCTGAATGTGTACGACCTCACGCCGCTCAA 300
consensus_10141#1 ------------------------------------------------------------
consensus_10141#0 CAACTACCTCCACTGGTGCGGCCTCGGGATCTTCCACTCCGCCGTCGAGGTCCATGGATC 360
consensus_10141#1 ------------------------------------------------------------
consensus_10141#0 GGAGTACAGTTTTGGAGCTCATGATCACCCAACGAGTGGGGTTTTTGAGGTGGAACCAAA 420
consensus_10141#1 ------------------------------------------------------------
consensus_10141#0 GTGCTGCCCAGGGTTCATGTACAGATGTTCAATTTTCATAGGCCGTACGAGTTTGAATCC 480
consensus_10141#1 -------------------------------------------------TTCCCGGGCCT 11
* *
consensus_10141#0 CTTAGAATTTCGAGATTTCATTCAGAGAATGGCTTCAGAATACCATGGAGATACTTATCA 540
consensus_10141#1 CTGGGCGCGTGTACACCCGACTTGGCAAA-GGCATTAGGGCGCCTTTTGGCAAACTG--G 68
** * * * * * * * ** *** * ** ** * * * *
consensus_10141#0 CCTCATTTCCAAAAACTGTAACCACTTTACGGATGATCTCAGTACCAGATTGACAGGAAA 600
consensus_10141#1 CCTTTTCTGCCAAGA---TAAGCATTGC-CGGTTGGGAGTGCAACTTGGGACATAATGCA 124
*** * * * ** * *** ** * *** ** ** * * * *
consensus_10141#0 ACCGATTCCTGGCTGGGTTAACCGACTTGCGAAGCTAGGTGCCTTTTGCAACTGCCTTCT 660
consensus_10141#1 ACCTGCGCGGGACTGGTCCATTT--CCTCCTAGATGATTCCCCTACTACTA-TGCCTAC- 180
*** * * **** * * * * * * *** * * * ***** *
consensus_10141#0 GCCAGAAAGCATGCGGTTGGAGTCAACTGGGACAAAGCACCTCGCGGACT-GTCATTTCT 719
consensus_10141#1 GCCAATGGAGCCATGTCTC---TCGAAGATGGCAAGATGCTTGAAGACCAAGCTACCTGG 237
**** * * ** * * *** * * * * * * *
consensus_10141#0 CAGATGATTCCCACACATCCAGCAATGAGCATTTTGAAGATGAAGATCTTGAAGACAAGC 779
consensus_10141#1 CTGTTGCGACCAATGCTTCTGGTTGTCTGTAT-----AGATGCATA--TTGGTGAAAGGA 290
* * ** ** * * ** * * * ** ***** * * *** ** * *
consensus_10141#0 ACCTGCTTTCACAATCTTCTGTTTCTGAAGATGCAATTGTAAAGGAAGTTCACAGGTGAC 839
consensus_10141#1 AG---------------TCTGCAACAGGTGGACCAAAGCTAGCTCGAGGCTAATGACAAG 335
* **** * * * *** ** ** * * *
consensus_10141#0 AAACTGCTGAGGCTATACAGAATAATTTGGTGTGTAGTTTGTCATTCATTTTGTACATTG 899
consensus_10141#1 AATTAATCTTGGTGGTGTAGATTTCGTCAGTGCATGGTT----GTACAATGTGTGAAT-- 389
** ** * *** * * *** * *** * ** * *** **
consensus_10141#0 TAATTCTGTATTCC--AAAATTTAGTGCGCTCT-TTGTATT--CTAAGTTG--ATATTCA 952
consensus_10141#1 --GTCATGTATTCCCGAAATTTGAGTGCGCTCTGTTGTGATTGCTAAGCTGTGATATTCA 447
* ******** *** ** ********** **** * ***** ** *******
consensus_10141#0 T-ATTATTGTGGCCGGTTTATTGTCATGATTGATTTT-GTT-CATTCCATTTGTACAAAC 1009
consensus_10141#1 TGATTATTGTGGCCGGTTTATTGTCATGATTGATTTTCGTTGCATTCCATTTGTACAAAC 507
* *********************************** *** ******************
consensus_10141#0 ACTGTAATACCCTACCTACTGAGGCTCCTTATAGGTAG-TCTGGAAGTCACTCTGCATGT 1068
consensus_10141#1 CCTGTAATACCCTACCTACTGAGGCTCCTTATAGGTAGCTCTGGAAGTCACTCTGCATGT 567
************************************* *********************
consensus_10141#0 GTACTCTTAAGTCTTAAATTCGTTTCTTGTAAAAATGTGAGTTCAAAGAGCG 1120
consensus_10141#1 GTACTCTTAAGTCTTAAATTCGTTTCTTGTAAAAA----------------- 602
***********************************
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||