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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10207#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2141 fasta sequence
[GCTTTAGCTGCTTGGCCAGCCAATAAGAAACAAACAAACACACCATGGATCATGATAAATATGCATTGCTACTCTAATAAGGAACTAAGGAAGTCAGCAAATGCAGGTGTTGTGTTTTTTTTTTCTCTGCATGGTCCTAGCTGTTTAATTGACAACTAGAATGCACACTATAAAGGGAGGAAAAGGAGGCAGCTAACATGAAAGTATCTCACAAAGTCACAGCTAATGTGCTAGTCAATTTGTTCTCTCACACACTGAGAAAGATGTTTTTTTTTTAGAACTGAGAAAGAGGTAAAGACTCCCTATTAGGGGGTTGGGTACAAGTATAGTAAAATGAACATGGTGAAAGGAGCTCACAAAATGGTAGTTAGCCACCAAATTTTTTCAAACATTTAGACCATCCATGCATATGTTTAGAAACTTATCTGGATTGTTCCAGATATTCTTAAAAATATTCTTTTAATACTATGGTTGTACCATAGCACATATATCATAACGCAAAGCTACAAAAAGGCAGTGACCATCTATCCTCTCATGTTTGACTTAACAAACACGTACACAAAAACCCAAAAAATGTGAAACAAGCAAGAACCGAAGGAGCTGCAAGCCACATCATGCCTTGCATCGTCACCAACAAATCAATAAATACCTTTCAAAATAAATAGACACCAGACATATTTTTGTGTCACTAGTATAATACAAGAATAAATGAATAGACACCAGACCTATTATTGTGTGACTGGTATAATGTATTTATATCCACACCAACATGATAGAGAGTACACGTTACACGTACTTTGTTTTGGTCTCATCTGAAGTCTGAAATCTGAAGCAAATAAACAAAGAATTGCAGAGAAGAAAAAATGTGCTCTCTTTGTGTTGACCACTTAGCTCATCCATGGAGATAAGCCCAGAGGATGCGTACAAAGCTTCTCTCCTCCGTTGAGCTGTATCCATGGTTGTTATTGCAAATTTAACAACTCCTTGTCACCATTGCACACAGCCAAAAACGCCCCTGTATTCCTGTACAGAAAACATGCACAAACTGTATTTTATTTCTTCAGCATGTGCTCTGCTTCTGTATTTTCGTCAGGGAGAAATGTCTGACCTTTGGAGAGAGGCTCAGTGTTTGGAGACTGTCATTTGCACTGTTTTATCCAATTTGGAGATAGTGGTATGCTACTGTCTACTACCATTGTTAGTAGTACTGTACTGTTTTAGAGTCTTGGACCATAAATATCTTACGAGTTTATAAGTCTCCCAAGATCTTTTTGCCGTTTACTCTTCACTGTAGTGTCCAGTTGTCCACTCCACTATTGCATCAGCTAATCGAAATCGACAATGGTGTGCAACCTAGTGCCTACCATTACATAGTCTCAAAGAAAGTGTACAATTATTTCAGTAAAGGACAGATCAGAAAAGAAAGAACATAAATACCAGCCATCTGCAAAAGTTATTACAACTACAATTTTATAATAACTTCTTTAATTTCTCTCTGCATGGCTTACATTACATTGTACACTCTGTATTCCTTGTGGTTGCGGCTATAAATAGGAGAGCACAAGAGTTGTAGCTTCCCTTGTCTTGCTCAAGTGTTCAATTTTTTGTGTGCGTTTTTCAGCTCGTGTGTGATTGAGAAGTACACAAGGAGAAGAAGGAGAAGACGACGCAGCTGCCATGGGAGAAGAGAAGCAGAATGACGAGAGGAAGAACAAGTACGCCGTCGGGTGCTCCATCATCGGCTCCATCATCTCGGTCCTCATGGGCTATGGTAAACTACATTAGAACACCTAATTGACATGTTATTATAACATTTTCGATATCGGTGATTTTAGTGAGATCAGTGATTTACCGCCGATCTCTGTCTCGTTCAGCATGTACGTGTTAGCGGGATTCACGTGTCACGTGAGTGCGGTGTGTGTGCGCGTCTTTCATGTAATCGCGCGCGAAAAAATAAAGAAAAAGAAGGAAAATTGGCATGATGAAAAATAATTAAATTGCAGACACTGGTGTGATGAATGGGGCGATGCTGTTCATCAAGGAGGACCTGAAGACCAACGACACGCAGGTGCATGTCCTCGCCGGGATCCTCAACGTGTGCGCGCTCGTCGGTTCCCTCACCGACGGCCGCGTCTCCTACT]
[+] EMBL AK106326 [GCTTTAGCTGCTTGGCCAGCCAATAAGAAACAAACAAACACACCATGGATCATGATAAATATGCATTGCTACTCTAATAAGGAACTAAGGAAGTCAGCAAATGCAGGTGTTGTGTTTTTTTTTTCTCTGCATGGTCCTAGCTGTTTAATTGACAACTAGAATGCACACTATAAAGGGAGGAAAAGGAGGCAGCTAACATGAAAGTATCTCACAAAGTCACAGCTAATGTGCTAGTCAATTTGTTCTCTCACACACTGAGAAAGATGTTTTTTTTTTAGAACTGAGAAAGAGGTAAAGACTCCCTATTAGGGGGTTGGGTACAAGTATAGTAAAATGAACATGGTGAAAGGAGCTCACAAAATGGTAGTTAGCCACCAAATTTTTTCAAACATTTAGACCATCCATGCATATGTTTAGAAACTTATCTGGATTGTTCCAGATATTCTTAAAAATATTCTTTTAATACTATGGTTGTACCATAGCACATATATCATAACGCAAAGCTACAAAAAGGCAGTGACCATCTATCCTCTCATGTTTGACTTAACAAACACGTACACAAAAACCCAAAAAATGTGAAACAAGCAAGAACCGAAGGAGCTGCAAGCCACATCATGCCTTGCATCGTCACCAACAAATCAATAAATACCTTTCAAAATAAATAGACACCAGACATATTTTTGTGTCACTAGTATAATACAAGAATAAATGAATAGACACCAGACCTATTATTGTGTGACTGGTATAATGTATTTATATCCACACCAACATGATAGAGAGTACACGTTACACGTACTTTGTTTTGGTCTCATCTGAAGTCTGAAATCTGAAGCAAATAAACAAAGAATTGCAGAGAAGAAAAAATGTGCTCTCTTTGTGTTGACCACTTAGCTCATCCATGGAGATAAGCCCAGAGGATGCGTACAAAGCTTCTCTCCTCCGTTGAGCTGTATCCATGGTTGTTATTGCAAATTTAACAACTCCTTGTCACCATTGCACACAGCCAAAAACGCCCCTGTATTCCTGTACAGAAAACATGCACAAACTGTATTTTATTTCTTCAGCATGTGCTCTGCTTCTGTATTTTCGTCAGGGAGAAATGTCTGACCTTTGGAGAGAGGCTCAGTGTTTGGAGACTGTCATTTGCACTGTTTTATCCAATTTGGAGATAGTGGTATGCTACTGTCTACTACCATTGTTAGTAGTACTGTACTGTTTTAGAGTCTTGGACCATAAATATCTTACGAGTTTATAAGTCTCCCAAGATCTTTTTGCCGTTTACTCTTCACTGTAGTGTCCAGTTGTCCACTCCACTATTGCATCAGCTAATCGAAATCGACAATGGTGTGCAACCTAGTGCCTACCATTACATAGTCTCAAAGAAAGTGTACAATTATTTCAGTAAAGGACAGATCAGAAAAGAAAGAACATAAATACCAGCCATCTGCAAAAGTTATTACAACTACAATTTTATAATAACTTCTTTAATTTCTCTCTGCATGGCTTACATTACATTGTACACTCTGTATTCCTTGTGGTTGCGGCTATAAATAGGAGAGCACAAGAGTTGTAGCTTCCCTTGTCTTGCTCAAGTGTTCAATTTTTTGTGTGCGTTTTTCAGCTCGTGTGTGATTGAGAAGTACACAAGGAGAAGAAGGAGAAGACGACGCAGCTGCCATGGGAGAAGAGAAGCAGAATGACGAGAGGAAGAACAAGTACGCCGTCGGGTGCTCCATCATCGGCTCCATCATCTCGGTCCTCATGGGCTATGGTAAACTACATTAGAACACCTAATTGACATGTTATTATAACATTTTCGATATCGGTGATTTTAGTGAGATCAGTGATTTACCGCCGATCTCTGTCTCGTTCAGCATGTACGTGTTAGCGGGATTCACGTGTCACGTGAGTGCGGTGTGTGTGCGCGTCTTTCATGTAATCGCGCGCGA ]
[+] EMBL CB669346 [ TCGGTTCCATCATCTCGGTCCTCATGGGCTATGGTAAACTACATTAGAACACCTAATTGACATGTAATTATAACGTTTTCCATATCGGGGATTTTAGTGAGATCAATGATTTACCGCCGATCTCTGTCTCGTTCAGCATGTACGTGTTAGCGGGATTCACGTGTCACCTTAGTGCCGTGTGTGTGCCCGTCTTTCATGTAATCTCGCGCGAAAAAATAAAGAAAAAGAAGGAAAATTGGCATGATGAAAAATAATTAAATTGCAGACACTGGTGTGATGAATGGGGCGATGCTGTTCATCAAGGAGGACCTGAAGACCAACGACACGCAGGTGCATGTCCTCGCCGGGATCCTCAACGTGTGCGCGCTCGTCGGTTCCCTCACCGACGGCCGCGTCTCCTACT]
consensusID : consensus_10207#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1979 fasta sequence
[ATATTATCCAAACACCATATAAACCTTTCTCACCTTCCGGATTCCGGCCATCTTCGTTTCTCGTCTTCGCCGGCGGCCGCCGCATTTCTGATCGGCCGATATATATCGGATCTTCAGACTGGTCGCAGCAGCTCGTGTGTGATTGAGAAGTACACAAGGAGAAGAAGGAGAAGACGACGCAGCTGCCATGGGAGAAGAGAAGCAGAATGACGAGAGGAAGAACAAGTACGCCGTCGGGTGCTCCATCATCGGCTCCATCATCTCGGTCCTCATGGGCTATGACACTGGTGTGATGAGTGGGGCGATGCTGTTCATCAAGGAGGACCTGAAGACGAACGACACGCAGGTGCAGGTCCTCGCCGGGATCCTCAACGTGTGCGCGCTCGTCGGCTCCCTCACCGCCGGCCGCGTCTCCGACTGCGTCGGCCGCCGCCTCACCATCTCCCTCGCCGCCTGCATCTTCCTCGTGGGCTCCGTCCTCATGGGCCTCGCGCCCAACTTCGCCACGCTCCTCGCCGGCCGCTGCGTCGCCGGCGTCGGCGTCGGCTACGCGCTCATGATTGCGCCGGTGTACGCCGCCGAGATCGCCTCCGCCGACATCCGCGGCTCGCTCACCTCGCTCCCGGAGATCTGCATCAGCTTCGGGATACTCATCGGCTACGTGGCCAACTACCTGCTCGCCAAGCTGCCGCTGGTGTACGGGTGGCGCGCCATGCTCGGCCTCGGCGCGCTCCCGAGCGCCGCGCTCGCGCTCGGCGTGCTCGCCATGCCCGAGTCCCCGCGGTGGCTCGTCGTCCAGGGCCGCGCCGAGGAGGCGCTCTCCGTGCTCCGCCGCGTGTGCGACAGGCCCAGCGAGGCCGACGCGCGGCTCGCGGAGATCAAGGCCGCGGCGGGGCTCGCCGACGACGACGGCGCCGCCGCCAACGCGGGCAGCGGCGGCAAGGGCGTGTGGAGGGAGCTGTTCCTGCACCCGACGCCGCCGGTGCGGCGCATCGTCATCGCCGCCCTGGGGATCCACTTCTTCCAGCACCTCACCGGCATCGAGGCCGTGGTGCTCTACAGCCCGCGCATCTTCAAGGCGGCCGGCATCGCCAGCCGCAACTCGGTGCTCGCTGCGACCATCGGCGTGGGCGTCACCAAGACGGCGTTCATCCTCACCGCCATCCTCCTCGTCGACCGCATAGGCCGGCGGCCGCTCTACCTGTCAAGCCTCGCCGGCATCATCGCCTCGCTCGCCTGCCTCGGCATGGGCCTCACCGTCATCGAGCGGTCGCCGCCGCACCACTCGCCGGCGTGGGCCGTCGTGCTCGCCATCGCCACCGTGTTCACCTTCGTCGCCTCCTTCTCCATCGGCGTCGGGCCGATCACCTGGGCCTACAGCTCGGAGGTGTACCCGCTCCGCCTCCGCGCGCAGGGCGCCAGCGTCGGCGTCGCCATCAACCGCGTGATGAACGCCGGCGTGTCCATGACGTTCGTGTCGCTCTACAAGGCCATCACCATCGGCGGCGCCTTCTTCCTCTTCGCCGGGCTCGCCGTCGCCGCCGCCACGTTCTTCTACCTCCTGTGCCCGGAGACGCAGGGCAAGCCGCTGGAGGAGATCGAGGAGGTGTTCAGCCAGGGGTGGCGCGCGCGGCGCCGGGCGTCGGCGGCGGCCGTCGAGATGCCGGCCTCCGGCGGCGGCGGCGGCGGCGGCGCCCCGATGGCGTAGTGCGAAGTGCACCGCGGTGCGCGTGCGTGAACAAAGTGCAACGCACGCGTGTGGATGACGTGGAAGTGTTTGTCACTTGGGGAAAAGA-ACGAATATTCGCTAGCTAGCTAGTGGTACAGATGGCTAGAGATTGAAATGGAAGGGACCTGATACTACTACTGTTGCATTTGTAGGAAA-CGACTA-CTAGCTAACAATGTCATTCTGGTGTCGTGTGGTGTTTAGAAAAAACAAAATCGTTGAAATACAGTAAAAAAAATTAAGAAAATAAAAA]
[+] EMBL AK121279 [ATATTATCCAAACACCATATAAACCTTTCTCACCTTCCGGATTCCGGCCATCTTCGTTTCTCGTCTTCGCCGGCGGCCGCCGCATTTCTGATCGGCCGATATATATCGGATCTTCAGACTGGTCGCAGCAGCTCGTGTGTGATTGAGAAGTACACAAGGAGAAGAAGGAGAAGACGACGCAGCTGCCATGGGAGAAGAGAAGCAGAATGACGAGAGGAAGAACAAGTACGCCGTCGGGTGCTCCATCATCGGCTCCATCATCTCGGTCCTCATGGGCTATGACACTGGTGTGATGAGTGGGGCGATGCTGTTCATCAAGGAGGACCTGAAGACGAACGACACGCAGGTGCAGGTCCTCGCCGGGATCCTCAACGTGTGCGCGCTCGTCGGCTCCCTCACCGCCGGCCGCGTCTCCGACTGCGTCGGCCGCCGCCTCACCATCTCCCTCGCCGCCTGCATCTTCCTCGTGGGCTCCGTCCTCATGGGCCTCGCGCCCAACTTCGCCACGCTCCTCGCCGGCCGCTGCGTCGCCGGCGTCGGCGTCGGCTACGCGCTCATGATTGCGCCGGTGTACGCCGCCGAGATCGCCTCCGCCGACATCCGCGGCTCGCTCACCTCGCTCCCGGAGATCTGCATCAGCTTCGGGATACTCATCGGCTACGTGGCCAACTACCTGCTCGCCAAGCTGCCGCTGGTGTACGGGTGGCGCGCCATGCTCGGCCTCGGCGCGCTCCCGAGCGCCGCGCTCGCGCTCGGCGTGCTCGCCATGCCCGAGTCCCCGCGGTGGCTCGTCGTCCAGGGCCGCGCCGAGGAGGCGCTCTCCGTGCTCCGCCGCGTGTGCGACAGGCCCAGCGAGGCCGACGCGCGGCTCGCGGAGATCAAGGCCGCGGCGGGGCTCGCCGACGACGACGGCGCCGCCGCCAACGCGGGCAGCGGCGGCAAGGGCGTGTGGAGGGAGCTGTTCCTGCACCCGACGCCGCCGGTGCGGCGCATCGTCATCGCCGCCCTGGGGATCCACTTCTTCCAGCACCTCACCGGCATCGAGGCCGTGGTGCTCTACAGCCCGCGCATCTTCAAGGCGGCCGGCATCGCCAGCCGCAACTCGGTGCTCGCTGCGACCATCGGCGTGGGCGTCACCAAGACGGCGTTCATCCTCACCGCCATCCTCCTCGTCGACCGCATAGGCCGGCGGCCGCTCTACCTGTCAAGCCTCGCCGGCATCATCGCCTCGCTCGCCTGCCTCGGCATGGGCCTCACCGTCATCGAGCGGTCGCCGCCGCACCACTCGCCGGCGTGGGCCGTCGTGCTCGCCATCGCCACCGTGTTCACCTTCGTCGCCTCCTTCTCCATCGGCGTCGGGCCGATCACCTGGGCCTACAGCTCGGAGGTGTACCCGCTCCGCCTCCGCGCGCAGGGCGCCAGCGTCGGCGTCGCCATCAACCGCGTGATGAACGCCGGCGTGTCCATGACGTTCGTGTCGCTCTACAAGGCCATCACCATCGGCGGCGCCTTCTTCCTCTTCGCCGGGCTCGCCGTCGCCGCCGCCACGTTCTTCTACCTCCTGTGCCCGGAGACGCAGGGCAAGCCGCTGGAGGAGATCGAGGAGGTGTTCAGCCAGGGGTGGCGCGCGCGGCGCCGGGCGTCGGCGGCGGCCGTCGAGATGCCGGCCTCCGGCGGCGGCGGCGGCGGCGGCGCCCCGATGGCGTAGTGCGAAGTGCACCGCGGTGCGCGTGCGTGAACAAAGTGCAACGCACGCGTGTGGATGACGTGGAAGTGTTTGTCACTTGGGGAAAAGA ACGAATATTCGCTAGCTAGCTAGTGGTACAGATGGCTAGAGATTGAAATGGAAGGGACCTGATACTACTACTGTTGCATTTGTAGGAAA CGACTA CTAGCTAACAATGTCATTCTGGTGTCGTGTGGTGTTTAGAAAAAACAAAATCGTTGAAATACAGTAAAAAAAATTAAGAAAATAAAAA]
[-] EMBL CB669345 [ CGCAACTCGGTGCTCGCTGCGACCATCGGCGTGGGCGTCACCAAGACGGCGTTCATCCTCACCGCCATCCTCCTCGTCGACCGCATAGGCCGGCGGCCGCTCTACCTGTCAAGCCTCGCCGGCATCATCGCCTCGCTCGCCTGCCTCGGCATGGGCCTCACCGTCATCGAGCGGTCGCCGCCGCACCACTCGCCGGCGTGGGCCGTCGTGCTCGCCATCGCCACCGTGTTCACCTTCGTCGCCTCCTTCTCCATCGGCGTCGGGCCGATCACCTGGGCCTACAGCTCGGAGGTGTACCCGCTCCGCCTCCGCGCGCAGGGCGCCAGCGTCGGCGTCGCCATCAACCGCGTGATGAACGCCGGCGTGTCCATGACGTTCGTGTCGCTCTACAAGGCCATCACCATCGGCGGCGCCTTCTTCCTCTTCGCCGGGCTCGCCGTCGCCGCCGCCACGTTCTTCTACCTCCTGTGCCCGGAGACGCAGGGCAAGCCGCTGGAGGAGATCGAGGAGGTGTTCAGCCAGGGGTGGCGCGCGCGGCGCCGGGCGTCGGCGGCGGCCGTCGAGATGCCGGCCTCCGGCGGCGGCGGCGGCGGCGGCGCCCCGATGGCGTAGTGCGAAGTGCACCGCGGTGCGCGTGCGTGAACAAAGTGCAACGCACGCGTGTGGATGACGTGGAAGTGTTTGTCACTTGGGGAAAAGACACGAATATTCGCTAGCTAGCTAGTGGT ]
[-] EMBL CB642398 [ CGGCGGCCGCTTTACCTGTCAAGCCTCGCCGGCATCATCGCCTCGCTCGCCTGCCTCGGCATGGGCCTCACCGTCATCGAGCGGTCGCCGCCGCACCACTCGCCGGCGTGGGCCGTCGTGCTCGCCATCGCCACCGTGTTCACCTTCGTCGCCTCCTTCTCCATCGGCGTCGGGCCGATCACCTGGGCCTACAGCTCGGAGGTGTACCCGCTCCGCCTCCGCGCGCAGGGCGCCAGCGTCGGCGTCGCCATCAACCGCGTGATGAACGCCGGCGTGTCCATGACGTTCGTGTCGCTCTACAAGGCCATCACCATCGGCGGCGCCTTCTTCCTCTTCGCCGGGCTCGCCGTCGCCGCCGCCACGTTCTTCTACCTCCTGTGCCCGGAGACGCAGGGCAAGCCGCTGGAGGAGATCGAGGAGGTGTTCAGCCAGGGGTGGCGCGCGCGGCGCCGGGCGTCGGCGGCGGCCGTCGAGATGCCGGCCTCCGGCGGCGGCGGCGGCGGCGGCGCCCCGATGGCGTAGTGCGAAGTGCACCGCGGTGCGCGTGCGTGAACAAAGTGCAACGCACGCGTGTGGATGACGTGGAAGTGTTTGTCACTTGGGGAAAAGA ACGAATATTCGCTAGCTAGCTAGTGGTACAGATGGCTAGAGATTGAAATGGAAGGGACCTGATACTACTACTGTTGCATTTGTAGGAAAGCGACTATCTAGCTAACAATGTCAaacaaaaa ]
consensusID : consensus_10207#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 773 fasta sequence
[GTGCGTTTTTCAGCTCGTGTGTGATTGAGAAGTACACAAGGAGAAGAAGGAGAAGACGACGCAGCTGCCATGGGAGAAGAGAAGCAGAATGACGAGAGGAAGAACAAGTACGCCGTCGGGTGCTCCATCATCGGCTCCATCATCTCGGTCCTCATGGGCTATGACACTGGTGTGATGAGTGGGGCGATGCTGTTCATCAAGGAGGACCTGAAGACGAACGACACGCAGGTGCAGGTCCTCGCCGGGATCCTCAACGTGTGCGCGCTCGTCGGCTCCCTCACCGCCGGCCGCGTCTCCGACTGCGTCGGCCGCCGCCTCACCATCTCCCTCGCCGCCTGCATCTTCCTCGTGGGCTCCGTCCTCATGGGCCTCGCGCCCAACTTCGCCACGCTCCTCGCCGGCCGCTGCGTCGCCGGCGTCGGCGTCGGCTACGCGCTCATGATTGCGCCGGTGTACGCCGCCGAGATCGCCTCCGCCGACATCCGCGGCTCGCTCACCTCGCTCCCGGAGATCTGCATCAGCTTCGGGATACTCATCGGCTACGTGGCCAACTACCTGCTCGCCAAGCTGCCGCTGGTGTACGGGTGGCGCGCCATGCTCGGCCTCGGCGCGCTCCCGAGCGCCGCGCTCGCGCTCGGCGTGCTCGCCATGCCCGAGTCCCCGCGGTGGCTCGTCGTCCAGGGCCGCGCCGAGGAGGCGCTCTCCGTGCTCCGCCGCGTGTGCGACAGGCCCAGCGAGGCCGACGCGCGGCTCGCGGAGATCAAGGCGCGGCG]
[+] EMBL CB642397 [GTGCGTTTTTCAGCTCGTGTGTGATTGAGAAGTACACAAGGAGAAGAAGGAGAAGACGACGCAGCTGCCATGGGAGAAGAGAAGCAGAATGACGAGAGGAAGAACAAGTACGCCGTCGGGTGCTCCATCATCGGCTCCATCATCTCGGTCCTCATGGGCTATGACACTGGTGTGATGAGTGGGGCGATGCTGTTCATCAAGGAGGACCTGAAGACGAACGACACGCAGGTGCAGGTCCTCGCCGGGATCCTCAACGTGTGCGCGCTCGTCGGCTCCCTCACCGCCGGCCGCGTCTCCGACTGCGTCGGCCGCCGCCTCACCATCTCCCTCGCCGCCTGCATCTTCCTCGTGGGCTCCGTCCTCATGGGCCTCGCGCCCAACTTCGCCACGCTCCTCGCCGGCCGCTGCGTCGCCGGCGTCGGCGTCGGCTACGCGCTCATGATTGCGCCGGTGTACGCCGCCGAGATCGCCTCCGCCGACATCCGCGGCTCGCTCACCTCGCTCCCGGAGATCTGCATCAGCTTCGGGATACTCATCGGCTACGTGGCCAACTACCTGCTCGCCAAGCTGCCGCTGGTGTACGGGTGGCGCGCCATGCTCGGCCTCGGCGCGCTCCCGAGCGCCGCGCTCGCGCTCGGCGTGCTCGCCATGCCCGAGTCCCCGCGGTGGCTCGTCGTCCAGGGCCGCGCCGAGGAGGCGCTCTCCGTGCTCCGCCGCGTGTGCGACAGGCCCAGCGAGGCCGACGCGCGGCTCGCGGAGATCAAGGCGCGGCG]
consensusID : consensus_10207#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence
[ACCTGCATCTTCCTCGCGGGCTCCGTCCTCATGGGCCTCGCCCCCAACTTCGCCACACTCCTCGCCGGCCGCTGTGGCGTCGGCGTCGGCTCCCTTGGCGTTCCTGCACCCGACGCCGCCGGTGCGGCGCATCGTCATCGCCGCCCTGGGGATCTACTTCTTCCAGCACCTCACCGGCATAGAGGTCGTGGTGCTGTACGGCCCGAGCATCTTCAAGGCGGCCAGCATAGCTAGCCGCAACTCGGTGCTCGCGGCGACGATCGGCGTGGGCGTAACCAAGACGGCGTTCATCATCGCCTCCCTTGATGCGTCTCAAGCTGGCGTCCCCGGCCGCTGTAGCCCGCCGCCGCTCCGCCTACTCCAGCAGCGCCATTAACGACACCCTCCCGCCGTTGCCGGAGCCGTGCATGGAGCAGCGACCATCCTTGTCGACGTCAGGAGCGGTTTCCTTTGAGGACGCCAGAGCCATGCCGCTGGGAAAGGAGTTTCCTCAAGTCCGTGCTGGTCGGCGCGTGAAATTTGGACAATTTGTCGTGGCTTATTTTGTTTTGTTTTTTCAATCTTCAATTTCTTGTTTCGAGATGTTGAACTGATGTAGTGGTTTTGGTTTTGAGCATTGTAGGATCTGTCGTCATTGTTTAGCTCGTGTATAGATGTGTCCCAGCACT]
[+] EMBL AK062341 [ACCTGCATCTTCCTCGCGGGCTCCGTCCTCATGGGCCTCGCCCCCAACTTCGCCACACTCCTCGCCGGCCGCTGTGGCGTCGGCGTCGGCTCCCTTGGCGTTCCTGCACCCGACGCCGCCGGTGCGGCGCATCGTCATCGCCGCCCTGGGGATCTACTTCTTCCAGCACCTCACCGGCATAGAGGTCGTGGTGCTGTACGGCCCGAGCATCTTCAAGGCGGCCAGCATAGCTAGCCGCAACTCGGTGCTCGCGGCGACGATCGGCGTGGGCGTAACCAAGACGGCGTTCATCATCGCCTCCCTTGATGCGTCTCAAGCTGGCGTCCCCGGCCGCTGTAGCCCGCCGCCGCTCCGCCTACTCCAGCAGCGCCATTAACGACACCCTCCCGCCGTTGCCGGAGCCGTGCATGGAGCAGCGACCATCCTTGTCGACGTCAGGAGCGGTTTCCTTTGAGGACGCCAGAGCCATGCCGCTGGGAAAGGAGTTTCCTCAAGTCCGTGCTGGTCGGCGCGTGAAATTTGGACAATTTGTCGTGGCTTATTTTGTTTTGTTTTTTCAATCTTCAATTTCTTGTTTCGAGATGTTGAACTGATGTAGTGGTTTTGGTTTTGAGCATTGTAGGATCTGTCGTCATTGTTTAGCTCGTGTATAGATGTGTCCCAGCACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10207#1 --------ATATTATCCAAACACCATATAAACCTTTCTCACCTTCCGGATTCCGGCCATC 52
consensus_10207#2 ------------------------------------------------------------
consensus_10207#3 ------------------------------------------------------------
consensus_10207#0 GCTTTAGCTGCTTGGCCAGCCAATAAGAAACAAACAAACACACCATGGATCATGATAAAT 60
consensus_10207#1 TTCGTTTCTCGTCTTCGCCGGCGGCCGCCGCATTTCTGATCGGCCGATATATATCGGATC 112
consensus_10207#2 ------------------------------------------------------------
consensus_10207#3 ------------------------------------------------------------
consensus_10207#0 ATGCATTGCTACTCTAATAAGGAACTAAGGAAGTCAGCAAATGCAGGTGTTGTGTTTTTT 120
consensus_10207#1 TTCAGACTGGTCGCAGC-AGCTCGTGTGTGATTGAGAAGTACACA-AGGAGAAGAAGGAG 170
consensus_10207#2 ------GTGCGTTTTTC-AGCTCGTGTGTGATTGAGAAGTACACA-AGGAGAAGAAGGAG 52
consensus_10207#3 ------------------------------------------------------------
consensus_10207#0 TTTTCTCTGCATGGTCCTAGCTGTTTAATTGACAACTAGAATGCACACTATAAAGGGAGG 180
consensus_10207#1 AAGACGACGCAGCTGCCATGGGAGAAGAG-----AAGCAGAATGACGAGAGGAAGAACAA 225
consensus_10207#2 AAGACGACGCAGCTGCCATGGGAGAAGAG-----AAGCAGAATGACGAGAGGAAGAACAA 107
consensus_10207#3 ---ACC-TGCATCTTCCTCGCGGGCTCCGTCCTCATGGGCCTCGCCCCCAACTTCGCCAC 56
consensus_10207#0 AAAAGGAGGCAGCTAACATGAAAGTATCTCA---CAAAGTCACAGCTAATGTGCTAGTCA 237
* *** ** * * * *
consensus_10207#1 GTACGCCGTCGGGTGCTCCATCATCGGC-TCCATCATCTCGGTCCTC-ATGGGCT--ATG 281
consensus_10207#2 GTACGCCGTCGGGTGCTCCATCATCGGC-TCCATCATCTCGGTCCTC-ATGGGCT--ATG 163
consensus_10207#3 ACTCCTCGCCGGCCGCTGTGGCGTCGGCGTCGGCTCCCTTGGCGTTC-CTGCACCCGACG 115
consensus_10207#0 ATTTGTTCTCTCACACACTGAGAAAGATGTTTTTTTTTTAGAACTGAGAAAGAGGTAAAG 297
* * * * * * * *
consensus_10207#1 ACACTGGTGTGATGAGTGGGGCGATGCTGTTCATCAAGGAGGACCTGAAGACGAACGACA 341
consensus_10207#2 ACACTGGTGTGATGAGTGGGGCGATGCTGTTCATCAAGGAGGACCTGAAGACGAACGACA 223
consensus_10207#3 CCGCCGGTGCGGCGCATCGT-CATCGCCGCCC-TGGGGATCTACTTCT--TCCAGCACCT 171
consensus_10207#0 ACTCCCTATTAGGGGGTTGGGTACAAGTATAGTAAAATGAACATGGTGAAAGGAGC-TCA 356
* * * * * * * * *
consensus_10207#1 CGCAGGTGCAGGTCCTCGCCGGGATCCTC--AACGTGTGCGCGCTCGTCGGCTCCCTC-- 397
consensus_10207#2 CGCAGGTGCAGGTCCTCGCCGGGATCCTC--AACGTGTGCGCGCTCGTCGGCTCCCTC-- 279
consensus_10207#3 CACCGGCATAGAGG-TCGTGGTGCTGTAC--GGCCCGAGCATCTTCAAGGCGGCCAGC-- 226
consensus_10207#0 CAAAATGGTAGTTAGCCACCAAATTTTTTCAAACATTTAGACCATCCATGCATATGTTTA 416
* ** * * * ** *
consensus_10207#1 -ACCGCCGGCCGCGTCTC--CGACTGCGTCGGCCGCCGCC---TCACCATCTCCCTCGCC 451
consensus_10207#2 -ACCGCCGGCCGCGTCTC--CGACTGCGTCGGCCGCCGCC---TCACCATCTCCCTCGCC 333
consensus_10207#3 -ATAGCTAGCCGCAACTCGGTGCTCGCGGCGACGATCGGCG--TGGGCGTAACCAAGACG 283
consensus_10207#0 GAAACTTATCTGGATTGTTCCAGATATTCTTAAAAATATTCTTTTAATACTATGGTTGTA 476
* * * *
consensus_10207#1 GCCTGCATCTTC--CTCGTGGGCTCCGTCCTCA--TGGGCCTCGCGCCCAACTTCGCCAC 507
consensus_10207#2 GCCTGCATCTTC--CTCGTGGGCTCCGTCCTCA--TGGGCCTCGCGCCCAACTTCGCCAC 389
consensus_10207#3 GCGTTCATCATCGCCTCCCTTGATGCGTCTCAAGCTGGCGTCCCCGGCCGCTGTAGCCCG 343
consensus_10207#0 CCATAGCACATATATCATAACGCAAAGCTACAAAAAGGCAGTGACCATCTATCCTCTCAT 536
* * * * * * * ** * * *
consensus_10207#1 GCTC--CTCGCCGGCCGC-TGCGTCGCCGGCGTCGGCGTCGGCTACGCGCTCATGATTGC 564
consensus_10207#2 GCTC--CTCGCCGGCCGC-TGCGTCGCCGGCGTCGGCGTCGGCTACGCGCTCATGATTGC 446
consensus_10207#3 CCGC--CGCTCCGCCTAC-TCCAGCAGCGCCATTAACGACACCCTCCCGCCGTTGCCGGA 400
consensus_10207#0 GTTTGACTTAACAAACACGTACACAAAAACCCAAAAAATGTGAAACAAGCAAGAACCGAA 596
* * * * * * * **
consensus_10207#1 GCCGGTGTACGCCGCCGAGATCGCCTCCGCCGACATCCGCGGCTCGCT-----CACCTC- 618
consensus_10207#2 GCCGGTGTACGCCGCCGAGATCGCCTCCGCCGACATCCGCGGCTCGCT-----CACCTC- 500
consensus_10207#3 GCCG-TGCATGGAGCAGCGACCATCCTTGTCGACGTCAGGAGCGGTTT-----CCTTTGA 454
consensus_10207#0 GGAGCTGCAAGCCACATC-ATGCCTTGCATCGTCACCAACAAATCAATAAATACCTTTCA 655
* * ** * * * * ** * * * * *
consensus_10207#1 -GCTCC-CGGAGATCTGCATCAGCTTCGGGATACTCATCGGCTACGTGGCCAACTACCTG 676
consensus_10207#2 -GCTCC-CGGAGATCTGCATCAGCTTCGGGATACTCATCGGCTACGTGGCCAACTACCTG 558
consensus_10207#3 GGACGC-CAGAGCCATGCCGCTGGGAAAGGAGTTTCCTCAAGTCCGTG---------CTG 504
consensus_10207#0 AAATAAATAGACACCAGACATATTTTTGTGTCACTAGTATAATACAAGAATAAATGAATA 715
** * * * * * * * *
consensus_10207#1 CTCGCCAAGCTGCCGCTGGTGTA--CGG-GTGGCGCGCCATGCTCGGCCTCGGCGCGCTC 733
consensus_10207#2 CTCGCCAAGCTGCCGCTGGTGTA--CGG-GTGGCGCGCCATGCTCGGCCTCGGCGCGCTC 615
consensus_10207#3 GTCGGCGCG-------TGAAATT--TGG-ACAATTTGTCGTGGCTTATTTTGTTTTGTTT 554
consensus_10207#0 GACACCAGACCTATTATTGTGTGACTGGTATAATGTATTTATATCCACACCAACATGATA 775
* * * * ** * *
consensus_10207#1 CCGAGCGCCGCGCTCGCGCTCGGCGTGCTCGCCATGCCCGAGTCC------CCGCGGTGG 787
consensus_10207#2 CCGAGCGCCGCGCTCGCGCTCGGCGTGCTCGCCATGCCCGAGTCC------CCGCGGTGG 669
consensus_10207#3 TT-----TCAATCTTCAATTTCTTGT-TTCGAGATGTT-GAACTG------ATGTAGTGG 601
consensus_10207#0 GAGAGTACACGTTACACGTACTTTGTTTTGGTCTCATCTGAAGTCTGAAATCTGAAGCAA 835
** * * ** * *
consensus_10207#1 CT---CGTCGTCCAGGGCCGCGCCGAGGAGGCGCTCTCCGTGCTCCGC-CGCGTGTGCGA 843
consensus_10207#2 CT---CGTCGTCCAGGGCCGCGCCGAGGAGGCGCTCTCCGTGCTCCGC-CGCGTGTGCGA 725
consensus_10207#3 TT---T-TGGTTTTGAGCATTGT--AGGATCTGTCGTCATTGTTTAGCTCGTGTATAGAT 655
consensus_10207#0 ATAAACAAAGAATTGCAGAGAAGAAAAAATGTGCTCTCTTTGTGTTGACCACTTAGCTCA 895
* * * * * * ** ** * * *
consensus_10207#1 CAGGCCCAGCGAGGCCGACGCGCGGCTCGCGGAGATCAAGGCCGCGGCGGGGCTCGCCGA 903
consensus_10207#2 CAGGCCCAGCGAGGCCGACGCGCGGCTCGCGGAGATCAAGGC-GCGGCG----------- 773
consensus_10207#3 GTGTCCCAGCACT----------------------------------------------- 668
consensus_10207#0 TCCATGGAGATAAGCCCAGAGGATGCGTACAAAGCTTCTCTCCTCCGTTGAGCT-GTATC 954
**
consensus_10207#1 CGACGACGGCGCCGCCGCCAACGCGGGCAGCGGCGGCAAGGGCGTGTGGAGGGAGCTGTT 963
consensus_10207#2 ------------------------------------------------------------
consensus_10207#3 ------------------------------------------------------------
consensus_10207#0 CATGGTTGTTATTGCAAATTTAACAACTCCTTGTCACCATTGCACACAGCCAAAAACGCC 1014
consensus_10207#1 CCTGCACCCG---ACGCCGCCGGTGCGGCGCATCGTCATCGCCGCCCTGGGGATCCACTT 1020
consensus_10207#2 ------------------------------------------------------------
consensus_10207#3 ------------------------------------------------------------
consensus_10207#0 CCTGTATTCCTGTACAGAAAACATGCACAAACTGTATTTTATTTCTTCAGCATGTGCTCT 1074
consensus_10207#1 CTTCCAGCACCTCACCGGCATCGAGGCCGTGGTGCTCTACAGCCCGCGCATCTTCAAGGC 1080
consensus_10207#2 ------------------------------------------------------------
consensus_10207#3 ------------------------------------------------------------
consensus_10207#0 GCTTCTGTATTTTCGTCAGGGAGAAATGTCTGACCTTTGGAGAGAGGCTCAGTGTTTGGA 1134
consensus_10207#1 GGCCGGCATCGCCAGCCGCAACTCGGTGCTCGCTGCGACCATCGGCGTGGGCGTCACCAA 1140
consensus_10207#2 ------------------------------------------------------------
consensus_10207#3 ------------------------------------------------------------
consensus_10207#0 GACTGTCATTTGCACTGTTTTATCCAATTTGGAGATAGTGGTATGCTACTGTCTACTACC 1194
consensus_10207#1 GACGGCGTTCATCCTCACCGCCATCCTCCTCGTCGACCGCATAGGCCGGCGGCCGCTCTA 1200
consensus_10207#2 ------------------------------------------------------------
consensus_10207#3 ------------------------------------------------------------
consensus_10207#0 ATTGTTAGTAGTACTGTACTGTTTTAGAGTCTTGGACCATAAATATCTTACGAGTTTATA 1254
consensus_10207#1 CCTGTCAAGCCTCGCCGGCATCATCGCCTCGCTCGCCTGCCTCGGCATGGGCCTCACCGT 1260
consensus_10207#2 ------------------------------------------------------------
consensus_10207#3 ------------------------------------------------------------
consensus_10207#0 AGTCTCCCAAGATCTTTTTGCCGTTTACTCTTCACTGTAGTGTCCAGTTGTCCACTCCAC 1314
consensus_10207#1 CATCGAGCGGTCGCCGCCGCACCACTCGCCGGCGTGGGCCGTCGTGCTCGCCATCGCCAC 1320
consensus_10207#2 ------------------------------------------------------------
consensus_10207#3 ------------------------------------------------------------
consensus_10207#0 TATTGCATCAGC-TAATCGAAATCGACAATGGTGTGCAACCTAGTGCCTACCATTACATA 1373
consensus_10207#1 CGTGTTCACCTTCGTCGCCTCCTTCTCCATCGGCGTCGGGCCGATCACCTGGG--CCTAC 1378
consensus_10207#2 ------------------------------------------------------------
consensus_10207#3 ------------------------------------------------------------
consensus_10207#0 GTCTCAAAGAAAGTGTACAATTATTTCAGTAAAGGACAGATCAGAAAAGAAAGAACATAA 1433
consensus_10207#1 AGCTCGGAGGTGTACCCGCTCCGCCTCCGCGCGCAGGGCGCCAGCGTCGGCGTCGCCATC 1438
consensus_10207#2 ------------------------------------------------------------
consensus_10207#3 ------------------------------------------------------------
consensus_10207#0 ATACCAGCCATCTGCAAAAGTTATTACAACTACAATTTTATAATAACTTCTTTAATTTCT 1493
consensus_10207#1 AACCGCGTGATGAACGCCGGCGTGTCCATGACGTTCGTGTCGCTCTACAAGGCCATCACC 1498
consensus_10207#2 ------------------------------------------------------------
consensus_10207#3 ------------------------------------------------------------
consensus_10207#0 CTCTGCATGGCTTACATTACATTGTACACTCTGTATTCCTTGTGGTTGCGGCTATAAATA 1553
consensus_10207#1 ATCGGCGGCGCCTTCTTCCTCTTCGCCGGGCTCGCCGTCGCCGCCGCCACGTTCTTCTAC 1558
consensus_10207#2 ------------------------------------------------------------
consensus_10207#3 ------------------------------------------------------------
consensus_10207#0 GGAGAGCACAAGAGTTGTAGCTTCCCTTGTCTTGCTCAAGTGTTCAATTTTTTGTGTGCG 1613
consensus_10207#1 CTCCTGTGCCCGGAGACGCAGGGCAAG--CCGCTGGAGGAGATCGAGGAGGTGTTCAGCC 1616
consensus_10207#2 ------------------------------------------------------------
consensus_10207#3 ------------------------------------------------------------
consensus_10207#0 TTTTTCAGCTCGTGTGTGATTGAGAAGTACACAAGGAGAAGAAGGAGAAGACGACGCAGC 1673
consensus_10207#1 AGGGGTGGCGCGCGCGGCGCCGGGCGTCGGCGGCGGCCGTCGAGATGCCGGC-----CTC 1671
consensus_10207#2 ------------------------------------------------------------
consensus_10207#3 ------------------------------------------------------------
consensus_10207#0 TGCCATGGGAGAAGAGAAGCAGAATGACGAGAGGAAGAACAAGTACGCCGTCGGGTGCTC 1733
consensus_10207#1 CGGCGGCGGCGGCGGCGGCGGCGCCCCGATGGCGTAGTGCGAAGTGCACCGCGGTGCGCG 1731
consensus_10207#2 ------------------------------------------------------------
consensus_10207#3 ------------------------------------------------------------
consensus_10207#0 CATCATCGGCTCCATCATCTCGGTCCTCATGGGCTATGGTAAACTACATTAGAACACCTA 1793
consensus_10207#1 TGCGTGAACAAAGTGCAACGCACGCG-TGTGGATGACGTGGAAGTGTTTGTCACTTGGGG 1790
consensus_10207#2 ------------------------------------------------------------
consensus_10207#3 ------------------------------------------------------------
consensus_10207#0 ATTGACATGTTATTATAACATTTTCGATATCGGTGATTTTAGTGAGATCAGTGATTTACC 1853
consensus_10207#1 AAAAGAACGAATATTCGCTAGCTAGCTAGTGGTACAGATGGCTAGAGATTGAAATGGAAG 1850
consensus_10207#2 ------------------------------------------------------------
consensus_10207#3 ------------------------------------------------------------
consensus_10207#0 GCCGATCTCTGTCTCGTTCAGCATGTACGTGTTAGCGGGATTCACGTGTCACGTGAGTGC 1913
consensus_10207#1 GGACCTGATAC-TACTACTGTTGCATTTGTAGGAAACGACTACTAGCTAACAATGTCATT 1909
consensus_10207#2 ------------------------------------------------------------
consensus_10207#3 ------------------------------------------------------------
consensus_10207#0 GGTGTGTGTGCGCGTCTTTCATGTAATCGCGCGCGAAAAAATAAAGAAAAAGAAGGAAAA 1973
consensus_10207#1 CTGGTGTCGTGTGGTGTTTAGAAAAAACAAAATCGTTGAAATACAGTAAAAAAAATTAAG 1969
consensus_10207#2 ------------------------------------------------------------
consensus_10207#3 ------------------------------------------------------------
consensus_10207#0 TTGGCATGATGAAAAATAATTAAATTGCAGACACTGGTGTGATGAATGGGGCGATGCTGT 2033
consensus_10207#1 AAAATAAAAA-------------------------------------------------- 1979
consensus_10207#2 ------------------------------------------------------------
consensus_10207#3 ------------------------------------------------------------
consensus_10207#0 TCATCAAGGAGGACCTGAAGACCAACGACACGCAGGTGCATGTCCTCGCCGGGATCCTCA 2093
consensus_10207#1 ------------------------------------------------
consensus_10207#2 ------------------------------------------------
consensus_10207#3 ------------------------------------------------
consensus_10207#0 ACGTGTGCGCGCTCGTCGGTTCCCTCACCGACGGCCGCGTCTCCTACT 2141
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||