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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10364#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1228 fasta sequence
[CTTTTTTTTTGATGCCCAAGTGGTTACCTGTTCTTCAATTA-C-CACCAGATGCACATAGAATGTTTGAAATTCATTAAAGAGATCTCTTAGTTAAATGATGTCTCTTCATGTCGTCTACAAGAACTGATCTATAACAAAATAGTAGGACCCAACAAGTAGAAAAGATGCAAATCCACTTCGGGCCATTCGTTGACCAATACCACGGAACAGAACATTCCTATCGGCAGGAGATATTCCTGTCTTTCTCTCTATCCAATTTCCTGGTACTTTCCATTTAAGAAGCCTCCTCTCCATCGCGATATACTTTGGTATAACAGTGCATTCCGAACGACTTTTGGCGGTATCAAATGTATGGGAAGCAGCAGCTGCTACAACTCCTGAGAAGCCTGCAGCAAGACTAGAAGCAAAAGGGGATACAGGGCCTGCTTCTTCCAGTTTGCTGGGTTGAGGGTTCATATTAACAGCACTCCAAGTAAGCATCGCTGTGTGTATGAATTGCCAAGTTGAAAAGAACATTCCTCCAAAGACGCAGTCCCGGGTCATCCCTGGTCTAAGTCCTCTCCATAGAGCACCCCATCCTTCAAGTGCTATCACTCTTGAAGGAACCTGAACATCAGAGGGCAATGGGGGCTTCCCTGAACCAGTAAGCATCCACGGATGCTGTTTCAGGGCACCCATCATGTCAGGATGCTTTGGGGAAAGATTGGACAAAAGGCTGACACTGCTATTCCATACTCTGATGTCAGGGACATAACCAGGCAACAGTTTGGAGAGCAGTGGAAATGCCACTTTTGTAATGTTTGCTGGGTCTGTGGCTTTCATTGGTTTCACAGAACCAACTTGGCTCCGAAGTTTCAGAAGTTCAAATGGTGTGCACAAAACTGACTCAACAGCACCAGCAGCTATGCCGGCCAACATAGCCTCAGAGTAAGAAACATAGTTGTCCTCCTTTCCATCTTTATAGAAGGCTGTTAAGAGTTCATAAGTTCCAAAACGTGCTCCCAACCCAGGCAGCTTGCCCAATACTGACCATCCAATGCCACTGTAAAGGCCTGCAGGGCCGGAGGCGGACATGAGCCGGTCCACCACTTGGCCGAGCCCCATCTTCTGCTGCGACCCCGTAGCGCTCAACTGGAGGAGGGTCTTGACGGTGTCGAGCGGGTGGACGGCGACCGCGGAGGCGGTGATCGCCGCGACGCCGGCGGCCGCGTGGCCGGCGAACACGCTG]
[+] EMBL CB645849 [CTTTTTTTTTGATGCCCAAGTGGTTACCTGTTCTTC ATTA C CACCAGATGCACATAGAATGTTTGAAATTCATTAAAGAGATCTCTTAGTTAAATGATGTCTCTTCATGTCGTCTACAAGAACTGATCTATAACAAAATAGTAGGACCCAACAAGTAGAAAAGATGCAAATCCACTTCGGGCCATTCGTTGACCAATACCACGGAACAGAACATTCCTATCGGCAGGAGATATTCCTGTCTTTCTCTCTATCCAATTTCCTGGTACTTTCCATTTAAGAAGCCTCCTCTCCATCGCGATATACTTTGGTATAACAGTGCATTCCGAACGACTTTTGGCGGTATCAAATGTATGGGAAGCAGCAGCTGCTACAACTCCTGAGAAGCCTGCAGCAAGACTAGAAGCAAAAGGGGATACAGGGCCTGCTTCTTCCAGTTTGCTGGGTTGAGGGTTCATATTAACAGCACTCCAAGTAAGCATCGCTGTGTGTATGAATTGCCAAGTTGAAAAGAACATTCCTCCAAAGACGCAGTCCCGGGTCATCCCTGGTCTAAGTCCTCTCCATAGAGCACCCCATCCTTCAAGTGCTATCACTCTTGAAGGAACCTGAACATCAGAGGGCAATGGGGGCTTCCCTGAACCAGTAAGCATCCACGGATGCTGTTTCAGGGCACCCATCATGTCAGGATGCTTTGGGGAAAGATTGGACAAAAGGCTGACACTGCTATTCCATACTCTGATGTCAGGGACATAACCAGGCCACAGTTTGGAGAGCAGTGGAAATGCC ]
[+] EMBL CB645888 [CTTTTTTTTTGATGCCCAAGTGGTTACCTGTTCTTCAATTC CTCTCCAGATGCACATAGAATGTTTGAAATTCATTAAAGAGATCTCTTAGTTAAATGATGTCTCTTCATGTCGTCTACAAGAACTGATCTATAACAAAATAGTAGGACCCAACAAGTAGAAAAGATGCAAATCCACTTCGGGCCATTCGTTGACCAATACCACGGAACAGAACATTCCTATCGGCAGGAGATATTCCTGTCTTTCTCTCTATCCAATTTCCTGGTACTTTCCATTTAAGAAGCCTCCTCTCCATCGCGATATACTTTGGTATAACAGTGCATTCCGAACGACTTTTGGCGGTATCAAATGTATGGGAAGCAGCAGCTGCTACAACTCCTGAGAAGCCTGCAGCAAGACTAGAAGCAAAAGGGGATACAGGGCCTGCTTCTTCCAGTTTGCTGGGTTGAGGGTTCATATTAACAGCACTCCAAGTAAGCATCGCTGTGTGTATGAATTGCCAAGTTGAAAAGAACATTCCTCCAAAGACGCAGTCCCGGGTCATCCCTGGTCTAAGTCCTCTCCATAGAGCACCCCATCCTTCAAGTGCTATCACTCTTGAAGGAACCTGAACATCAGAGGGCAATGGGGGCTTCCCTGAACCAGTAAGCATCCACGGATGCTGTTTCAGGGCACCCATCATGTCAGGATGCTTTGGGGAAAGATTGGACAAAAGGCTGACACTGCTATTCCATACTCTGATGTCAGGGACATAACCAGG ]
[-] EMBL AK059144 [ TGGTTACCTGTTCTTCAATTATT CACCAGATGCACATAGAATGTTTGAAATTCATTAAAGAGATCTCTTAGTTAAATGATGTCTCTTCATGTCGTCTACAAGAACTGATCTATAACAAAATAGTAGGACCCAACAAGTAGAAAAGATGCAAATCCACTTCGGGCCATTCGTTGACCAATACCACGGAACAGAACATTCCTATCGGCAGGAGATATTCCTGTCTTTCTCTCTATCCAATTTCCTGGTACTTTCCATTTAAGAAGCCTCCTCTCCATCGCGATATACTTTGGTATAACAGTGCATTCCGAACGACTTTTGGCGGTATCAAATGTATGGGAAGCAGCAGCTGCTACAACTCCTGAGAAGCCTGCAGCAAGACTAGAAGCAAAAGGGGATACAGGGCCTGCTTCTTCCAGTTTGCTGGGTTGAGGGTTCATATTAACAGCACTCCAAGTAAGCATCG ]
[-] EMBL CB645848 [ ATTAACAGCACTCCAAGTAAGCATCGCTGTGTGTATGAATTGCCAAGTTGAAAAGAACATTCCTCCAAAGACGCAGTCCCGGGTCATCCCTGGTCTAAGTCCTCTCCATAGAGCACCCCATCCTTCAAGTGCTATCACTCTTGAAGGAACCTGAACATCAGAGGGCAATGGGGGCTTCCCTGAACCAGTAAGCATCCACGGATGCTGTTTCAGGGCACCCATCATGTCAGGATGCTTTGGGGAAAGATTGGACAAAAGGCTGACACTGCTATTCCATACTCTGATGTCAGGGACATAACCAGGCAACAGTTTGGAGAGCAGTGGAAATGCCACTTTTGTAATGTTTGCTGGGTCTGTGGCTTTCATTGGTTTCACAGAACCAACTTGGCTCCGAAGTTTCAGAAGTTCAAATGGTGTGCACAAAACTGACTCAACAGCACCAGCAGCTATGCCGGCCAACATAGCCTCAGAGTAAGAAACATAGTTGTCCTCCTTTCCATCTTTATAGAAGGCTGTTAAGAGTTCATAAGTTCCAAAACGTGCTCCCAACCCAGGCAGCTTGCCCAATACTGACCATCCAATGCCACTGTAAAGGCCTGCAGGGCCGGAGGCGGACATGAGCCGGTCCACCACTTGGCCGAGCCCCATCTTCTGCTGCGACCCCGTAGCGCTCAACTGGAGGAGGGTCTTGACGGTGTCGAGCGGGTGGACGGCGACCGCGGAGGCGGTGATCGCCGCGACGCCGGCGGCCGCGTGGCCGGCGAACACGCTG]
[-] EMBL CB645887 [ AATTGCCAAGTGAAAAAGAACATTCCTCCAAAGACGCAGTCCCGGGTCATCCCTGGTCTAAGTCCTCTCCATAGAGCACCCCATCCTTCAAGTGCTATCACTCTTGAAGGAACCTGAACATCAGAGGGCAATGGGGGCTTCCCTGAACCAGTAAGCATCCACGGATGCTGTTTCAGGGCACCCATCATGTCAGGATGCTTTGGGGAAAGATTGGACAAAAGGCTGACACTGCTATTCCATACTCTGATGTCAGGGACATAACCAGGCAACAGTTTGGAGAGCAGTGGAAATGCCACTTTTGTAATGTTTGCTGGGTCTGTGGCTTTCATTGGTTTCACAGAACCAACTTGGCTCCGAAGTTTCAGAAGTTCAAATGGTGTGCACAAAACTGACTCAACAGCACCAGCAGCTATGCCGGCCAACATAGCCTCAGAGTAAGAAACATAGTTGTCCTCCTTTCCATCTTTATAGAAGGCTGTTAAGAGTTCATAAGTTCCAAAACGTGCTCCCAACCCAGGCAGCTTGCCCAATACTGACCATCCAATGCCACTGTAAAGGCCTGCAGGGCCGGAGGCGGACATGAGCCGGTCCACCACTTGGCCGAGCCCCATCTTCTGCTGCGACCCCGTAGCGCTCAACTGGAGGAGGGTCTTGACGGTGTCGAGCGGGTGGACGGCGACCGCGGAGGCGGTGATCGCCGCGACGCCGGCGGCCGCGTGGCCGGCGAACGCGCTG]
consensusID : consensus_10364#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence
[AACTAGTCTCGAGTTTTTTTTTTTTTTTTTTAAAATCTTATGATGAAATTAACCTTGAACAATAATGAAGACATATTTTTTTCTCACAAAATCCTTATCAAAAACTTAAAAAGGATCTTCAGTAGTTGCTACTCATCAGTCATCCTACCAACAATACGGTTTCCATACAAGATACTTGTTATCTCTTCAACAAAAGCCTGATACCAAAAGAGGCAGCCTTGAATTCTGTTCTTCAATTATTCACCAGATGCACATAGAATGTTTGAAATTCATTAAAGAGATCTCTTAGTTAAATGATGTCTCTTCATGTCGTCTACAAGAACTGATCTATAACAAAATAGTAGGACCCAACAAGTAGAAAAGATGCAAATCCACTTCGGGCCATTCGTTGACCAATACCACGGAACAGAACATTCCTATCGGCAGGAGATATTCCTGTCTTTCTCTCTATCCAATTTCCTGGTACTTTCCATTTAAGAAGCCTCCTCTCCATCGCGATATACTTTGGTATAACAGTGCATTCCGAACGACTTTTGGCGGTATCAAATGTATGGGAAGCAGCAGCTGCTACAACTCCTGAGAAGCCTGCAGCAAGACTAGAAGCAAAAGGGGA]
[+] EMBL CF323401 [AACTAGTCTCGAGTTTTTTTTTTTTTTTTTTAAAATCTTATGATGAAATTAACCTTGAACAATAATGAAGACATATTTTTTTCTCACAAAATCCTTATCAAAAACTTAAAAAGGATCTTCAGTAGTTGCTACTCATCAGTCATCCTACCAACAATACGGTTTCCATACAAGATACTTGTTATCTCTTCAACAAAAGCCTGATACCAAAAGAGGCAGCCTTGAATTCTGTTCTTCAATTATTCACCAGATGCACATAGAATGTTTGAAATTCATTAAAGAGATCTCTTAGTTAAATGATGTCTCTTCATGTCGTCTACAAGAACTGATCTATAACAAAATAGTAGGACCCAACAAGTAGAAAAGATGCAAATCCACTTCGGGCCATTCGTTGACCAATACCACGGAACAGAACATTCCTATCGGCAGGAGATATTCCTGTCTTTCTCTCTATCCAATTTCCTGGTACTTTCCATTTAAGAAGCCTCCTCTCCATCGCGATATACTTTGGTATAACAGTGCATTCCGAACGACTTTTGGCGGTATCAAATGTATGGGAAGCAGCAGCTGCTACAACTCCTGAGAAGCCTGCAGCAAGACTAGAAGCAAAAGGGGA]
consensusID : consensus_10364#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence
[TTTTTTTTTTTTTGAACAAAGTACAGGAACAATCATGGATGCCCAAGTGGTTACCTGTTCTTCAATTATTCACCAAATGCACATAGAAGGTTTGAAATTCATTAAAGAGATCTCTTAGTTAAATGATGTCTCTTCATGTCGTCTACAAAAACTGATCTATAACAAAATAGTAGGACCCAACAAGTAGAAAAGATGCAAATCCACTTCGGGCCATTCGTTGACCAATACCACGGAACAGAACATTCCTATCGGCAGGAGATATTCCTGTCTTTCTCTCTATCCAATTTCCTGGTACTTTCCATTTAAGAAGCCTCCTCTCCATCGCGATATACTTTGGTATAACAGTGCATTCCGAACGACTTTTGGCGGTATCAAATGTATGGGAAGCAGCAGCTGCTACAACTCCTGAGAAGCCTGCAGCAAGACTAGAAGCAAAAGGGGATACAGGGCCTGCTTCTTCCAGTTTGCTGGGTTGAGGGTTCATATTAACAGCACTCCAAGTAAGCATCGCTGTGTGTATGAATTGCCAAGTTGAAAAGAACATTCCTCCAAAGACGCAGTCCCGGGTCATCCCCCCTTGTCTCGGCCTCT]
[+] EMBL CA762639 [TTTTTTTTTTTTTGAACAAAGTACAGGAACAATCATGGATGCCCAAGTGGTTACCTGTTCTTCAATTATTCACCAAATGCACATAGAAGGTTTGAAATTCATTAAAGAGATCTCTTAGTTAAATGATGTCTCTTCATGTCGTCTACAAAAACTGATCTATAACAAAATAGTAGGACCCAACAAGTAGAAAAGATGCAAATCCACTTCGGGCCATTCGTTGACCAATACCACGGAACAGAACATTCCTATCGGCAGGAGATATTCCTGTCTTTCTCTCTATCCAATTTCCTGGTACTTTCCATTTAAGAAGCCTCCTCTCCATCGCGATATACTTTGGTATAACAGTGCATTCCGAACGACTTTTGGCGGTATCAAATGTATGGGAAGCAGCAGCTGCTACAACTCCTGAGAAGCCTGCAGCAAGACTAGAAGCAAAAGGGGATACAGGGCCTGCTTCTTCCAGTTTGCTGGGTTGAGGGTTCATATTAACAGCACTCCAAGTAAGCATCGCTGTGTGTATGAATTGCCAAGTTGAAAAGAACATTCCTCCAAAGACGCAGTCCCGGGTCATCCCCCCTTGTCTCGGCCTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10364#0 ------------------------------------------------------------
consensus_10364#2 ------------------------------------------------------------
consensus_10364#1 AACTAGTCTCGAGTTTTTTTTTTTTTTTTTTAAAATCTTATGATGAAATTAACCTTGAAC 60
consensus_10364#0 ------------------------------------------------------------
consensus_10364#2 ------------------------------------------------------------
consensus_10364#1 AATAATGAAGACATATTTTTTTCTCACAAAATCCTTATCAAAAACTTAAAAAGGATCTTC 120
consensus_10364#0 ------------------------------------------------------------
consensus_10364#2 ------------------------------------------------------TTTTTT 6
consensus_10364#1 AGTAGTTGCTACTCATCAGTCATCCTACCAACAATACGGTTTCCATACAAGATACTTGTT 180
consensus_10364#0 ---------------------CTTTTTTTTTGATGCCCAAGTGGTTACCTGTTCTTCAAT 39
consensus_10364#2 TTTTTTTGAACAAAGTACAGGAACAATCATGGATGCCCAAGTGGTTACCTGTTCTTCAAT 66
consensus_10364#1 ATCTCTTCAACAAAAGCCTGATACCAAAAGAGGCAGCC---TTGAATTCTGTTCTTCAAT 237
* ** * * ************
consensus_10364#0 TAC-CACCAGATGCACATAGAATGTTTGAAATTCATTAAAGAGATCTCTTAGTTAAATGA 98
consensus_10364#2 TATTCACCAAATGCACATAGAAGGTTTGAAATTCATTAAAGAGATCTCTTAGTTAAATGA 126
consensus_10364#1 TATTCACCAGATGCACATAGAATGTTTGAAATTCATTAAAGAGATCTCTTAGTTAAATGA 297
** ***** ************ *************************************
consensus_10364#0 TGTCTCTTCATGTCGTCTACAAGAACTGATCTATAACAAAATAGTAGGACCCAACAAGTA 158
consensus_10364#2 TGTCTCTTCATGTCGTCTACAAAAACTGATCTATAACAAAATAGTAGGACCCAACAAGTA 186
consensus_10364#1 TGTCTCTTCATGTCGTCTACAAGAACTGATCTATAACAAAATAGTAGGACCCAACAAGTA 357
********************** *************************************
consensus_10364#0 GAAAAGATGCAAATCCACTTCGGGCCATTCGTTGACCAATACCACGGAACAGAACATTCC 218
consensus_10364#2 GAAAAGATGCAAATCCACTTCGGGCCATTCGTTGACCAATACCACGGAACAGAACATTCC 246
consensus_10364#1 GAAAAGATGCAAATCCACTTCGGGCCATTCGTTGACCAATACCACGGAACAGAACATTCC 417
************************************************************
consensus_10364#0 TATCGGCAGGAGATATTCCTGTCTTTCTCTCTATCCAATTTCCTGGTACTTTCCATTTAA 278
consensus_10364#2 TATCGGCAGGAGATATTCCTGTCTTTCTCTCTATCCAATTTCCTGGTACTTTCCATTTAA 306
consensus_10364#1 TATCGGCAGGAGATATTCCTGTCTTTCTCTCTATCCAATTTCCTGGTACTTTCCATTTAA 477
************************************************************
consensus_10364#0 GAAGCCTCCTCTCCATCGCGATATACTTTGGTATAACAGTGCATTCCGAACGACTTTTGG 338
consensus_10364#2 GAAGCCTCCTCTCCATCGCGATATACTTTGGTATAACAGTGCATTCCGAACGACTTTTGG 366
consensus_10364#1 GAAGCCTCCTCTCCATCGCGATATACTTTGGTATAACAGTGCATTCCGAACGACTTTTGG 537
************************************************************
consensus_10364#0 CGGTATCAAATGTATGGGAAGCAGCAGCTGCTACAACTCCTGAGAAGCCTGCAGCAAGAC 398
consensus_10364#2 CGGTATCAAATGTATGGGAAGCAGCAGCTGCTACAACTCCTGAGAAGCCTGCAGCAAGAC 426
consensus_10364#1 CGGTATCAAATGTATGGGAAGCAGCAGCTGCTACAACTCCTGAGAAGCCTGCAGCAAGAC 597
************************************************************
consensus_10364#0 TAGAAGCAAAAGGGGATACAGGGCCTGCTTCTTCCAGTTTGCTGGGTTGAGGGTTCATAT 458
consensus_10364#2 TAGAAGCAAAAGGGGATACAGGGCCTGCTTCTTCCAGTTTGCTGGGTTGAGGGTTCATAT 486
consensus_10364#1 TAGAAGCAAAAGGGGA-------------------------------------------- 613
****************
consensus_10364#0 TAACAGCACTCCAAGTAAGCATCGCTGTGTGTATGAATTGCCAAGTTGAAAAGAACATTC 518
consensus_10364#2 TAACAGCACTCCAAGTAAGCATCGCTGTGTGTATGAATTGCCAAGTTGAAAAGAACATTC 546
consensus_10364#1 ------------------------------------------------------------
consensus_10364#0 CTCCAAAGACGCAGTCCCGGGTCATCCC---TGGTCTAAGTCCTCTCCATAGAGCACCCC 575
consensus_10364#2 CTCCAAAGACGCAGTCCCGGGTCATCCCCCCTTGTCTCGG-CCTCT-------------- 591
consensus_10364#1 ------------------------------------------------------------
consensus_10364#0 ATCCTTCAAGTGCTATCACTCTTGAAGGAACCTGAACATCAGAGGGCAATGGGGGCTTCC 635
consensus_10364#2 ------------------------------------------------------------
consensus_10364#1 ------------------------------------------------------------
consensus_10364#0 CTGAACCAGTAAGCATCCACGGATGCTGTTTCAGGGCACCCATCATGTCAGGATGCTTTG 695
consensus_10364#2 ------------------------------------------------------------
consensus_10364#1 ------------------------------------------------------------
consensus_10364#0 GGGAAAGATTGGACAAAAGGCTGACACTGCTATTCCATACTCTGATGTCAGGGACATAAC 755
consensus_10364#2 ------------------------------------------------------------
consensus_10364#1 ------------------------------------------------------------
consensus_10364#0 CAGGCAACAGTTTGGAGAGCAGTGGAAATGCCACTTTTGTAATGTTTGCTGGGTCTGTGG 815
consensus_10364#2 ------------------------------------------------------------
consensus_10364#1 ------------------------------------------------------------
consensus_10364#0 CTTTCATTGGTTTCACAGAACCAACTTGGCTCCGAAGTTTCAGAAGTTCAAATGGTGTGC 875
consensus_10364#2 ------------------------------------------------------------
consensus_10364#1 ------------------------------------------------------------
consensus_10364#0 ACAAAACTGACTCAACAGCACCAGCAGCTATGCCGGCCAACATAGCCTCAGAGTAAGAAA 935
consensus_10364#2 ------------------------------------------------------------
consensus_10364#1 ------------------------------------------------------------
consensus_10364#0 CATAGTTGTCCTCCTTTCCATCTTTATAGAAGGCTGTTAAGAGTTCATAAGTTCCAAAAC 995
consensus_10364#2 ------------------------------------------------------------
consensus_10364#1 ------------------------------------------------------------
consensus_10364#0 GTGCTCCCAACCCAGGCAGCTTGCCCAATACTGACCATCCAATGCCACTGTAAAGGCCTG 1055
consensus_10364#2 ------------------------------------------------------------
consensus_10364#1 ------------------------------------------------------------
consensus_10364#0 CAGGGCCGGAGGCGGACATGAGCCGGTCCACCACTTGGCCGAGCCCCATCTTCTGCTGCG 1115
consensus_10364#2 ------------------------------------------------------------
consensus_10364#1 ------------------------------------------------------------
consensus_10364#0 ACCCCGTAGCGCTCAACTGGAGGAGGGTCTTGACGGTGTCGAGCGGGTGGACGGCGACCG 1175
consensus_10364#2 ------------------------------------------------------------
consensus_10364#1 ------------------------------------------------------------
consensus_10364#0 CGGAGGCGGTGATCGCCGCGACGCCGGCGGCCGCGTGGCCGGCGAACACGCTG 1228
consensus_10364#2 -----------------------------------------------------
consensus_10364#1 -----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||