cluster # 10629

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Oryza sativa
cluster # 10629 cluster # 10629 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10629#0 length = 764 sequences # 1

consensus_10629#1 length = 438 sequences # 4
consensus_10629#2 length = 380 sequences # 2

consensusID : consensus_10629#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 764
fasta sequence

                              [ATTAACCAAAATTCCCAAATAGAAAGACAGGGACCTCCCTGAATAGCATCAGGACAATTCTTCACCATATTCAGTTGCTGTCATCATTCATCAGAATTTAGAACATCATGCATATTTCTATCTAGTTAAGCATGAACAGTAATATATTTCAGGATTAAGCACATTCTTTTCAGGACTATATCACTAATCAATCTGGCTTCGCCTTCCTCCGGTCCCTCTGGTAGCAATCCATCGGCATTTGGGAATATCAATTGATTATCCGCTGCAGCCATAGCAAAGAAATCTTGCGGTTAAGACTTAGACAGTGTGATATAGAAGCAGTACAACTCTTGCAAGTAAAAACAGAGCAAGTAAAAATACAATAGAGCTGTTGAACTTCACACTTATTATCCATTTTACAAGTTTGTTTGCATGCATTCAAACAAACTTGGGGGATCTGCATTTGTGTTATCATCATAAAAGGGCTATCCTATGTGGACACAACATTTGATATCTTCAGATTCGAAAAAACCAAACTTGTCGGCTTATATAATAAGTAGATATGTGAAGTCTAATACAACATAATATCAAGTAAATTCAAAAGAAAATTTGGTAATGAACAGAGAATTTCCATTTATTCACATGTTTGAGTTTTTTAATTAGCCTAAACTACCCAGAGCTTAGAAAGAAAATGGTCCTATTCCAGGACTTAGATGTAATTGAAAAATATGAGCCTATTTGTTGTTGTCATTTATTACCGACTACATAAGAGGCAATTTAGCTGA]

[+] EMBL CB676738             [ATTAACCAAAATTCCCAAATAGAAAGACAGGGACCTCCCTGAATAGCATCAGGACAATTCTTCACCATATTCAGTTGCTGTCATCATTCATCAGAATTTAGAACATCATGCATATTTCTATCTAGTTAAGCATGAACAGTAATATATTTCAGGATTAAGCACATTCTTTTCAGGACTATATCACTAATCAATCTGGCTTCGCCTTCCTCCGGTCCCTCTGGTAGCAATCCATCGGCATTTGGGAATATCAATTGATTATCCGCTGCAGCCATAGCAAAGAAATCTTGCGGTTAAGACTTAGACAGTGTGATATAGAAGCAGTACAACTCTTGCAAGTAAAAACAGAGCAAGTAAAAATACAATAGAGCTGTTGAACTTCACACTTATTATCCATTTTACAAGTTTGTTTGCATGCATTCAAACAAACTTGGGGGATCTGCATTTGTGTTATCATCATAAAAGGGCTATCCTATGTGGACACAACATTTGATATCTTCAGATTCGAAAAAACCAAACTTGTCGGCTTATATAATAAGTAGATATGTGAAGTCTAATACAACATAATATCAAGTAAATTCAAAAGAAAATTTGGTAATGAACAGAGAATTTCCATTTATTCACATGTTTGAGTTTTTTAATTAGCCTAAACTACCCAGAGCTTAGAAAGAAAATGGTCCTATTCCAGGACTTAGATGTAATTGAAAAATATGAGCCTATTTGTTGTTGTCATTTATTACCGACTACATAAGAGGCAATTTAGCTGA]




>consensus_10629#0
ATTAACCAAAATTCCCAAATAGAAAGACAGGGACCTCCCTGAATAGCATCAGGACAATTC
TTCACCATATTCAGTTGCTGTCATCATTCATCAGAATTTAGAACATCATGCATATTTCTA
TCTAGTTAAGCATGAACAGTAATATATTTCAGGATTAAGCACATTCTTTTCAGGACTATA
TCACTAATCAATCTGGCTTCGCCTTCCTCCGGTCCCTCTGGTAGCAATCCATCGGCATTT
GGGAATATCAATTGATTATCCGCTGCAGCCATAGCAAAGAAATCTTGCGGTTAAGACTTA
GACAGTGTGATATAGAAGCAGTACAACTCTTGCAAGTAAAAACAGAGCAAGTAAAAATAC
AATAGAGCTGTTGAACTTCACACTTATTATCCATTTTACAAGTTTGTTTGCATGCATTCA
AACAAACTTGGGGGATCTGCATTTGTGTTATCATCATAAAAGGGCTATCCTATGTGGACA
CAACATTTGATATCTTCAGATTCGAAAAAACCAAACTTGTCGGCTTATATAATAAGTAGA
TATGTGAAGTCTAATACAACATAATATCAAGTAAATTCAAAAGAAAATTTGGTAATGAAC
AGAGAATTTCCATTTATTCACATGTTTGAGTTTTTTAATTAGCCTAAACTACCCAGAGCT
TAGAAAGAAAATGGTCCTATTCCAGGACTTAGATGTAATTGAAAAATATGAGCCTATTTG
TTGTTGTCATTTATTACCGACTACATAAGAGGCAATTTAGCTGA

consensusID : consensus_10629#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 438
fasta sequence

                              [TTTTGATTTCTAACAGTAATAGTATATTGCAGGAGTTAATTAACCAAAATTTTTTAATGGAAAGACAGGGAACACCCTGAATAGCATCAGGACAATTCTTCACCATATTCAGTTGCTGTCATCATTCATCAGAATTCAGAACATCATGCATATTTCTATCTAGTTAAGCATAAACAGTAATATATTTCAGGATTAAGCACATTCTTTTCAGGACTTCATCACTAATCAA-TCTGGCTTCGCCTTGCTCCGGTCACTCTGGCAGCAATCCATCAACATTTGGGAATATCAACTGATTATCCGCGGCGAGAAGGCAGCGGAGAGCGCGGACGTCGGATGGGAAGC-AGTCGCCGTCGACGTCGGTGCGCCGCCACGCCGTCTCCTCGCGTCGCCAGCCGCACTTTCTACTCCTTCAGTCCAGTCAGGTCCAAGGGGAATTCG]

[-] EMBL BI804131             [TTTTGATTTCTAACAGTAATAGTATATTGCAGGAGTTAATTAACCAAAATTCCCAAATGGAAAGACAGGGAACACCCTGAATAGCATCAGGACAATTCTTCACCATATTCAGTTGCTGTCATCATTCATCAGAATTCAGAACATCATGCATATTTCTATCTAGTTAAGCATAAACAGTAATATATTTCAGGATTAAGCACATTCTTTTCAGGACTTCATCACTAATCAA TCTGGCTTCGCCTTGCTCCGGTCACTCTGGCAGCAATCCATCAACA TTGGGAATATCAACTGATTATCCGCGGCGAGAAGGCAGCGGAGAGCGCGGACGTCGGATGGGAAGC AGTCGCCGTCGACGTCGGTGCGCCGCCACGCCGTCTCCTCGCGTCGCCAG                                              ]
[+] EMBL CF328290             [                                                tTTTTTTAATGGAAAGACAGGGAACACCCTGAATAGCATCAGGACAATTCTTCACCATATTCAGTTGCTGTCATCATTCATCAGAATTCAGAACATCATGCATATTTCTATCTAGTTAAGCATAAACAGTAATATATTTCAGGATTAAGCACATTCTTTTCAGGACTTCATCACTAATCAA TCTGGCTTCGCCTTGCTCCGGTCACTCTGGCAGCAATCCATCAACATTTGGGAATATCAACTGATTATCCGCGGCGAGAAGGCAGCGGAGAGCGCGTACGTCGGATGGGAAGC AGTCGCCGTCGACGTCGGTGCGCCGCCACGCCGTCTCCTCGCGTCGC                                                 ]
[-] EMBL CF328289             [                                                  TTTTTAATGGAAAGACAGGGAACACCCTGAATAGCATCAGGACAATTCTTCACCATATTCAGTTGCTGTCATCATTCATCAGAATTCAGAACATCATGCATATTTCTATCTAGTTAAGCATAAACAGTAATATATTTCAGGATTAAGCACATTCTTTTCAGGACTTCATCACTAATCAA TCTGGCTTCGCCTTGCTCCGGTCACTCTGGCAGCAATCCATCAACATTTGGGAATATCAACTGATTATCCGCGGCGAGAAGGCAGCGGAGAGCGCGTACGTCGGATGGGAAGC AGTCGCCGTCGACGTCGGTGCGCCGCCACGCCGTCTCCTCGCGTCGCCAGCCGCACTTTCTACTCCTTCAGTCCAGTCAGGTCCAAGGGGAATTCG]
[-] EMBL CB679052             [                                                                    GGAACACCCTGAATAGCATCAGGACAATTCTTCACCATATTCAGTTGCTGTCATCATTCATCAGAATTCAGAACATCATGCATATTTCTATCTAGTTAAGCATGAACAGTAATATATTTCAGGATTAAGCACATTCTTTTCAGGACTATATCACTAATCAAGTCTGGCTTCGCCTTCCTCCGGTCCCTCTGGTAGCAATCCATCGGCATTTGGGAATATCAATTGATTATCCGTGGCGAGAAGGCGGCGGAGAGCGTGGACGTCGGATGGGAAGCGGGTCGTCGTCGCCGTagcctc                                                                           ]




>consensus_10629#1
TTTTGATTTCTAACAGTAATAGTATATTGCAGGAGTTAATTAACCAAAATTTTTTAATGG
AAAGACAGGGAACACCCTGAATAGCATCAGGACAATTCTTCACCATATTCAGTTGCTGTC
ATCATTCATCAGAATTCAGAACATCATGCATATTTCTATCTAGTTAAGCATAAACAGTAA
TATATTTCAGGATTAAGCACATTCTTTTCAGGACTTCATCACTAATCAATCTGGCTTCGC
CTTGCTCCGGTCACTCTGGCAGCAATCCATCAACATTTGGGAATATCAACTGATTATCCG
CGGCGAGAAGGCAGCGGAGAGCGCGGACGTCGGATGGGAAGCAGTCGCCGTCGACGTCGG
TGCGCCGCCACGCCGTCTCCTCGCGTCGCCAGCCGCACTTTCTACTCCTTCAGTCCAGTC
AGGTCCAAGGGGAATTCG

consensusID : consensus_10629#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 380
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTGGAAAGACAGGGAACACCCTGAATAGCATCAGGACAATTCTTCACCATATTCAGTTGCTGGCATCATTCATCAGAATTCAGAACATCATGCCTATTTCTATCTAGTTAAGCATAAACAGTAATATATTTCAGGATTAAGCACATTCTTTTCAGGACTTCATCACTAATCAATCTGGCTTCGCCTTGCTCCGGGCACTCTGGCAGCAATCCATCAACATTTGGGAATATCAACTGATTATCCCCGGCGAAAAAGCAACGGAAAACGCGTACCTCGGATGGGAAACAATCGCCGTCGACGTCGGTGCGCCGCCACGCCGTCTTCTCGCGTTGCCAGCCGCACGCCGCTGCCTCGCGTC]

[+] EMBL CF334492             [TTTTTTTTTTTTTTTTTTTTTTTTGGAAAGACAGGGAACACCCTGAATAGCATCAGGACAATTCTTCACCATATTCAGTTGCTGGCATCATTCATCAGAATTCAGAACATCATGCCTATTTCTATCTAGTTAAGCATAAACAGTAATATATTTCAGGATTAAGCACATTCTTTTCAGGACTTCATCACTAATCAATCTGGCTTCGCCTTGCTCCGGGCACTCTGGCAGCAATCCATCAACATTTGGGAATATCAACTGATTATCCCCGGCGAAAAAGCAACGGAAAACGCGTACCTCGGATGGGAAACAATCGCCGTCGACGTCGGTGCGCCGCCACGCCGTCTTCTCGCGTTGCCA                       ]
[-] EMBL CF334491             [                                                      AGGACAATTCTTCACCATATTCAGTTGCTGTCATCATTCATCAGAATTCAGAACATCATGCATATTTCTATCTAGTTAAGCATAAACAGTAATATATTTCAGGATTAAGCACATTCTTTTCAGGACTTCATCACTAATCAATCTGGCTTCGCCTTGCTCCGGTCACTCTGGCAGCAATCCATCAACATTTGGGAATATCAACTGATTATCCGCGGCGAGAAGGCAGCGGAGAGCGCGTACGTCGGATGGGAAGCAGTCGCCGTCGACGTCGGTGCGCCGCCACGCCGTCTCCTCGCGTCGCCAGCCGCACGCCGCTGCCTCGCGTC]




>consensus_10629#2
TTTTTTTTTTTTTTTTTTTTTTTTGGAAAGACAGGGAACACCCTGAATAGCATCAGGACA
ATTCTTCACCATATTCAGTTGCTGGCATCATTCATCAGAATTCAGAACATCATGCCTATT
TCTATCTAGTTAAGCATAAACAGTAATATATTTCAGGATTAAGCACATTCTTTTCAGGAC
TTCATCACTAATCAATCTGGCTTCGCCTTGCTCCGGGCACTCTGGCAGCAATCCATCAAC
ATTTGGGAATATCAACTGATTATCCCCGGCGAAAAAGCAACGGAAAACGCGTACCTCGGA
TGGGAAACAATCGCCGTCGACGTCGGTGCGCCGCCACGCCGTCTTCTCGCGTTGCCAGCC
GCACGCCGCTGCCTCGCGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10629#1      TTTTGATTTCTAACAGTAATAGTATATTGCAGGAGTTAATTAACCAAAATTTTTTAATGG 60
consensus_10629#2      ----------------------------------TTTTTTTTTTTTTTTTTTTTTTTTGG 26
consensus_10629#0      --------------------------------------ATTAACCAAAATTCCCAAATAG 22
                                                              **        **      * *

consensus_10629#1      AAAGACAGGGAACACCCTGAATAGCATCAGGACAATTCTTCACCATATTCAGTTGCTGTC 120
consensus_10629#2      AAAGACAGGGAACACCCTGAATAGCATCAGGACAATTCTTCACCATATTCAGTTGCTGGC 86
consensus_10629#0      AAAGACAGGGACCTCCCTGAATAGCATCAGGACAATTCTTCACCATATTCAGTTGCTGTC 82
                       *********** * ******************************************** *

consensus_10629#1      ATCATTCATCAGAATTCAGAACATCATGCATATTTCTATCTAGTTAAGCATAAACAGTAA 180
consensus_10629#2      ATCATTCATCAGAATTCAGAACATCATGCCTATTTCTATCTAGTTAAGCATAAACAGTAA 146
consensus_10629#0      ATCATTCATCAGAATTTAGAACATCATGCATATTTCTATCTAGTTAAGCATGAACAGTAA 142
                       **************** ************ ********************* ********

consensus_10629#1      TATATTTCAGGATTAAGCACATTCTTTTCAGGACTTCATCACTAATCAATCTGGCTTCGC 240
consensus_10629#2      TATATTTCAGGATTAAGCACATTCTTTTCAGGACTTCATCACTAATCAATCTGGCTTCGC 206
consensus_10629#0      TATATTTCAGGATTAAGCACATTCTTTTCAGGACTATATCACTAATCAATCTGGCTTCGC 202
                       ***********************************  ***********************

consensus_10629#1      CTTGCTCCGGTCACTCTGGCAGCAATCCATCAACATTTGGGAATATCAACTGATTATCCG 300
consensus_10629#2      CTTGCTCCGGGCACTCTGGCAGCAATCCATCAACATTTGGGAATATCAACTGATTATCCC 266
consensus_10629#0      CTTCCTCCGGTCCCTCTGGTAGCAATCCATCGGCATTTGGGAATATCAATTGATTATCCG 262
                       *** ****** * ****** ***********  **************** ********* 

consensus_10629#1      CGGCGAGAAGGCAGCGGAGAGCGCGGACGTCGGATGGGAAGCAGTCGCCGTCGACGTCGG 360
consensus_10629#2      CGGCGAAAAAGCAACGGAAAACGCGTACCTCGGATGGGAAACAATCGCCGTCGACGTCGG 326
consensus_10629#0      CTGCAGCCATAGCAAAGAAATCTTGCGGTTAAGACTTAGACAGTGTGATATAGAAG-CAG 321
                       * **    *       ** * *  *    *  **     *      *   * ** * * *

consensus_10629#1      TGCGCCGC---CACGCCGTCTCCTCGCGTCGCCAGCCGCACTTT--CTACTC--CTTCAG 413
consensus_10629#2      TGCGCCGC---CACGCCGTCTTCTCGCGTTGCCAGCCGCACG----CCGCTG--CCTCGC 377
consensus_10629#0      TACAACTCTTGCAAGTAAAAACAGAGCAAGTAAAAATACAATAGAGCTGTTGAACTTCAC 381
                       * *  * *   ** *          **      *    **      *   *   * **  

consensus_10629#1      TCCAGTCAGGTCCAAGGGGAATTCG----------------------------------- 438
consensus_10629#2      GTC--------------------------------------------------------- 380
consensus_10629#0      ACTTATTATCCATTTTACAAGTTTGTTTGCATGCATTCAAACAAACTTGGGGGATCTGCA 441
                                                                                   

consensus_10629#1      ------------------------------------------------------------
consensus_10629#2      ------------------------------------------------------------
consensus_10629#0      TTTGTGTTATCATCATAAAAGGGCTATCCTATGTGGACACAACATTTGATATCTTCAGAT 501
                                                                                   

consensus_10629#1      ------------------------------------------------------------
consensus_10629#2      ------------------------------------------------------------
consensus_10629#0      TCGAAAAAACCAAACTTGTCGGCTTATATAATAAGTAGATATGTGAAGTCTAATACAACA 561
                                                                                   

consensus_10629#1      ------------------------------------------------------------
consensus_10629#2      ------------------------------------------------------------
consensus_10629#0      TAATATCAAGTAAATTCAAAAGAAAATTTGGTAATGAACAGAGAATTTCCATTTATTCAC 621
                                                                                   

consensus_10629#1      ------------------------------------------------------------
consensus_10629#2      ------------------------------------------------------------
consensus_10629#0      ATGTTTGAGTTTTTTAATTAGCCTAAACTACCCAGAGCTTAGAAAGAAAATGGTCCTATT 681
                                                                                   

consensus_10629#1      ------------------------------------------------------------
consensus_10629#2      ------------------------------------------------------------
consensus_10629#0      CCAGGACTTAGATGTAATTGAAAAATATGAGCCTATTTGTTGTTGTCATTTATTACCGAC 741
                                                                                   

consensus_10629#1      -----------------------
consensus_10629#2      -----------------------
consensus_10629#0      TACATAAGAGGCAATTTAGCTGA 764