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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10807#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1058 fasta sequence
[CTCATCATCATCATTCATCAATCGTCGCCTGATCGCCTCCAGCGAAATTCTTCCTCCATTTCTCTCTCCATCGAATCTCATCCCAGCAGCAGCAGCAGCAGCAGCAGCCGCCATGGATTCCAAGGCGGACGCGGAGTCAGCCACGGCCAGG------GCCGCCCGTCGTGTCGCCGCCCGTCTCCGCCAACCCCTACGTGGTCTCCGCCCCCTCCGCTCAGCCGCCCGCCAAGAGCGCCAGGGAGAATCTCCGGGAGAAGCTCGACGTGGTCGGGAGGAGGTTCGGGGACGCCGCGCGCAAGACCGAGGGCATCGTCGGCGACATCTGGCAGCATCTGAAAACTGGGCCAAGCATTGCTGATACGGCGATGGGGAGGATTGCTCAGATATCCAAGGTGATAGCTGAAGGTGGATATGACAAGGTGTTCCACCAGACGTTCGAGTGCCTGCCTGATGAGAAGCTCAAGAAGGCGTACGCATGCTACCTTTCGACCTCTCATGGCCCGATCATGGGCGTCTTGTACATCTCCACTGCCAAGATTGCATTTTGCAGTGACAGTCCTGTGGCGTATGTCACCGAGGATAATAAG-AACCAATCTTCCATCTACAAGGTA-GTTGTACCCGTTGCTCAGCTAAGATCAGTCACTCCTACGGCAAGCCAGCAGAACCCAGCAGAGAGGTACATCCAGGTGGTTTCTGTCGACAACCATGACTTCTGGTTCATGGGCTTC-GTC-AACTACGACGGTGCCGTGAAGAGCCTCCAGGAGGCCGTTCGTGGCGGCAAGGCTTCACTTCACCATCACATGTATTTTTTGTGAACATCGCCGTTACATGTATTGATCTGTCCGTCGTTCGTCATGCATCACTGGGAATTCGCATGTGTCGGTGTGTTAAATTGTCTGTACAGATCGCTCCCCTTGCTGTGTGTATTGGCTGAAATTTGTGTTGCATATGCATTCATGTATTGTATGTAGTGTGTGGA-CTA-GATGTGTACAAATACTGGATTGATTGTTGGCTTGATGCTCCATTAAAGCCTTTCTGTTCGTTGTTCCCCAAAAAAAAAA]
[+] EMBL AK071567 [CTCATCATCATCATTCATCAATCGTCGCCTGATCGCCTCCAGCGAAATTCTTCCTCCATTTCTCTCTCCATCGAATCTCATCCCAGCAGCAGCAGCAGCAGCAGCAGCCGCCATGGATTCCAAGGCGGACGCGGAGTCAGCCACGGCCAGG GCCGCCCGTCGTGTCGCCGCCCGTCTCCGCCAACCCCTACGTGGTCTCCGCCCCCTCCGCTCAGCCGCCCGCCAAGAGCGCCAGGGAGAATCTCCGGGAGAAGCTCGACGTGGTCGGGAGGAGGTTCGGGGACGCCGCGCGCAAGACCGAGGGCATCGTCGGCGACATCTGGCAACATCTGAAAACTGGGCCAAGCATTGCTGATACGGCGATGGGGAGGATTGCTCAGATATCCAAGGTGATAGCTGAAGGTGGATATGACAAGGTGTTCCACCAGACGTTCGAGTGCCTGCCTGATGAGAAGCTCAAGAAGGCGTACGCATGCTACCTTTCGACCTCTCATGGCCCGATCATGGGCGTCTTGTACATCTCCACTGCCAAGATTGCATTTTGCAGTGACAGTCCTGTGGCGTATGTCACCGAGGATAATAAG AACCAATCTTCCATCTACAAGGTA GTTGTACCCGTTGCTCAGCTAAGATCAGTCACTCCTACGGCAAGCCAGCAGAACCCAGCAGAGAGGTACATCCAGGTGGTTTCTGTCGACAACCATGACTTCTGGTTCATGGGCTTC GTC AACTACGACGGTGCCGTGAAGAGCCTCCAGGAGGCCGTTCGTGGCGGCAAGGCTTCACTTCACCATCACATGTATTTTTTGTGAACATCGCCGTTACATGTATTGATCTGTCCGTCGTTCGTCATGCATCACTGGGAATTCGCATGTGTCGGTGTGTTAAATTGTCTGTACAGATCGCTCCCCTTGCTGTGTATATTGGCTGAAATTTGTGTTGCATATGCATTCATGTATTGTATGTAGTGTGTGGA CTA GATGTGTACAAATACTGGATTGATTGTTGGCTTGATGCTCCATTAAAGCCTTTCTGT ]
[+] EMBL C91668 [ ATTCATCAATCGTCGCCTGATCGCCTCCAGCGAAATTCTTCCTCCATTTCTCTCTCCATCGAATCTCATCCCAGCAGCAGCAGCAGCAGCAGCAGCCGCCATGGATTCCAAGGCGGACGCGGAGTCAGCCACGGCCAGG GCCGCCCGTCGTGTCGCCGCCCGTCTCCGCCAACCCCTACGTGGTCTCCGCCCCCTCCGCTCAGCCGCCCGCCAAGAGCGCCAGGGAGAATCTCCGGGAGAAGCTCGACGTGGTCGGGAGGAGGTTCGGGGACGCCGCGCGCAAGACCGAGGGCATCGTCGGCGACATCTGGCAGCATCTGAAAACTGGGCCAAGCATTGCTGATACGGCGATGGGG ]
[+] EMBL AK059824 [ TCTCTCCATCGAATCTCATCCCAGCAGCAGCAGCAGCAGCAGCAGCCGCCATGGATTCCAAGGCGGACGCGGAGTCAGCCACGGCCAGGGCCGCCGCCGCCCGTCGTGTCGCCGCCCGTCTCCGCCAACCCCTACGTGGTCTCCGCCCCCTCCGCTCAGCCGCCCGCCAAGAGCGCCAGGGAGAATCTCCGGGAGAAGCTCGACGTGGTCGGGAGGAGGTTCGGGGACGCCGCGCGCAAGACCGAGGGCATCGTCGGCGACATCTGGCAGCATCTGAAAACTGGGCCAAGCATTGCTGATACGGCGATGGGGAGGATTGCTCAGATATCCAAGGTGATAGCTGAAGGTGGATATGACAAGGTGTTCCACCAGACGTTCGAGTGCCTGCCTGATGAGAAGCTCAAGAAGGCGTACGCATGCTACCTTTCGACCTCTCATGGCCCGATCATGGGCGTCTTGTACATCTCCACTGCCAAGATTGCATTTTGCAGTGACAGTCCTGTGGCGTATGTCACCGAGGATAATAAG AACCAATCTTCCATCTACAAGGTA GTTGTACCCGTTGCTCAGCTAAGATCAGTCACTCCTACGGCAAGCCAGCAGAACCCAGCAGAGAGGTACATCCAGGTGGTTTCTGTCGACAACCATGACTTCTGGTTCATGGGCTTC GTC AACTACGACGGTGCCGTGAAGAGCCTCCAGGAGGCCGTTCGTGGCGGCAAGGCTTCACTTCACCATCACATGTATTTTTTGTGAACATCGCCGTTACATGTATTGATCTGTCCGTCGTTCGTCATGCATCACTGGGAATTCGCATGTGTCGGTGTGTTAAATTGTCTGTACAGATCGCTCCCCTTGCTGTGTATATTGGCTGAAATTTGTGTTGCATATGCATTCATGTATTGTATGTAGTGTGTGGA CTA GATGTGTACAAATACTGGATTGATTGTTGGCTTGATGCTCCATTAAAGCCTTTCTGTT ]
[-] EMBL CB629611 [ CAAGACCGAGGGCATCGTCGGCGACATCTGGCAGCATCTGAAAACTGGGCCAAGCATTGCTGATACGGCGATGGGGAGGATTGCTCAGATATCCAAGGTGATAGCTGAAGGTGGATATGACAAGGTGTTCCACCAGACGTTCGAGTGCCTGCCTGATGAGAAGCTCAAGAAGGCGTACGCATGCTACCTTTCGACCTCTCATGGCCCGATCATGGGCGTCTTGTACATCTCCACTGCCAAGATTGCATTTTGCAGTGACAGTCCTGTGGCGTATGTCACCGAGGATAATAAG AACCAATCTTCCATCTACAAGGTA GTTGTACCCGTTGCTCAGCTAAGATCAGTCACTCCTACGGCAAGCCAGCAGAACCCAGCAGAGAGGTACATCCAGGTGGTTTCTGTCGACAACCATGACTTCTGGTTCATGGGCTTC GTC AACTACGACGGTGCCGTGAAGAGCCTCCAGGAGGCCGTTCGTGGCGGCAAGGCTTCACTTCACCATCACATGTATTTTTTGTGAACATCGCCGTTACATGTATTGATCTGTCCGTCGTTCGTCATGCATCACTGGGAATTCGCATGTGTCGGTGTGTTAAATTGTCTGTACAGATCGCTCCCCTTGCTGTGTGTATTGGCTGAAATTTGTGTTGCATATGCATTCATGTATTGTATGTAGTGTGTGGA CTA GATGTGTACAAATACTGGATTGATTGTTGGCTTGATGCTCCATTAAAGCCTTTCTGTTCGTTGTTC ]
[-] EMBL CB629612 [ TGGCAGCATCTGAAAACTGGGCCAAGCATTGCTGATACGGCGATGGGGAGGATTGCTCAGATATCCAAGGTGATAGCTGAAGGTGGATATGACAAGGTGTTCCACCAGACGTTCGAGTGCCTGCCTGATGAGAAGCTCAAGAAGGCGTACGCATGCTACCTTTCGACCTCTCATGGCCCGATCATGGGCGTCTTGTACATCTCCACTGCCAAGATTGCATTTTGCAGTGACAGTCCTGTGGCGTATGTCACCGAGGATAATAAG AACCAATCTTCCATCTACAAGGTA GTTGTACCCGTTGCTCAGCTAAGATCAGTCACTCTTACGGCAAGCCAGCAGAACCCAGCAGAGAGGTACATCCAGGTGGTTTCTGTCGACAACCATGACTTCTGGTTCATGGGCTTC GTC AACTACGACGGTGCCGTGAAGAGCCTCCAGGAGGCCGTTCGTGGCGGCAAGGCTTCACTTCACCATCACATGTATTTTTTGTGAACATCGCCGTTACATGTATTGATCTGTCCGTCGTTCGTCATGCATCACTGGGAATTCGCATGTGTCGGTGTGTTAAATTGTCTGTACAGATCGCTCCCCTTGCTGTGTGTATTGGCTGAAATTTGTGTTGCATATGCATTCATGTATTGTATGTAGTGTGTGGATCTACGATGTGTACAAATACTGGATTGATTGTTGGCTGGATGCTCCATTAAAGCCTTTCTGTTCGTTGTT ]
[+] EMBL BI811941 [ TGTGGCGTATGTCACCGAGGATAATAAGAAACCAATCTTCCATCTACAAGGTAGGTTGTACCCGTTGCTCAGCTAAGATCAGTCACTCCTACGGCAAGCCACCAGAACCCAGCAGAGAGGTACATCCAGGTGGTTTCTGTCGACAACCATGACTTCTGGTTCATGGGCTTC GTCAAACTACGACGGTGCCGTGAAGAGCCTCCAGGA GCCGTTCGTGGCGGCAAGGCTTCACTTCACCATCACATGTATTTTTTGTGAACATCGCCGTTACATGTATTGATCTGTCCGTCGTTCGTCATGCATCACTGGGAATTCGCATGTGTCGGTGTGTTAAATTGTCTGTACAGATCGCTCCCCTTGCTGTGTGTATTGGCTGAAATTTGTGTTGCATATGCATTCATGTATTGTATGTAGTGTGTGGA CTA GATGTGTAC AATACTGGATTGATTGTTGGCTTGATGCTCCATTAAA CCTTTCTGTTCGTTGTTCCCCAAAAAAAAAA]
[+] EMBL BI813782 [ GCTCA CTAAGATCAGTCACT CTACGGCAAGCCACCAGAACCCAGCAGAGAGGTACATCCAGGTGGTTTCTGTCGACAACCATGACTTCTGGTTCATGGGCTTCAGTC AACTACGACGGTCCCGTGAAGAGCCTCCAGGA GCCGTTCGTGGCGGCAAGGCTTCACTTCACCATCACATGTATTTTTTGTGAACATCGCCGTTACATGTATTGATCTGTCCGTCGTTCGTCATGCATCACTGGGAATTCGCATGTGTCGGTGTGTTAAATTGTCTGTACAGATCGCTCCCCTTGCTGTGTGTATTGGCTGAAATTTGTGTTGCATATGCATTCATGTATTGTATGTAGTGTGTGGA CTA GATGTGTACAAATACTGGATTGATTGTTGGCTTGATGCTCCATTAAAGCCTTTCTGTTCGTTGTTCCCAAAAAAAAAA ]
consensusID : consensus_10807#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence
[TGAAGGTGGATATGACAAGGTGTTCCACCAGACGTTCGAGTGCCTGCCTGATGAGAAGCTCAAGAAGGCGTACGCATGCTACCTTTCGACTTTTCATGGCCCGATCATGGGCGTCTTGTACATCTCCACTGCCAAGATTGCATTTTGCAGTGACAGTCCTGTGGCGTATGTCACCGAGGATAATAAGAACCAATCTTCCATCTACAAGGTAGTTGTACCCGTTGCTCAGCTAAGATCAGTCACTCTTACGGCAAGCCAGCAGAACCCAGCAGAGAGGTACATCCAGGTGGTTTCTGTCGACAACCATGACTTTTGGTTCATGGGATTCGTCAACTACGACGGTGCCGTGAAGAGCCTCCAGGAGGCCGTTCGTGGCGGCAAGGCTTCACTTCACCATCACATGTATTTTTTGTGAACATCGCCGTTACATGTATTGATCTGTCCGTCGTTCGTCATGCATCACTGGGAATTCGCATGTGTCGGTGTGTTAAATTGTCTGTACAGATCGCTCCCCTTGCTGTGTGTATTGGCTGAAATTTGTGTTGCATATGCATTCATGTATTGTACCGCCGTGGCGGCCCTGGCCGTGGCTGACTCCGCGTCCGCCTTGGAATACATGGCG]
[-] EMBL CB629610 [TGAAGGTGGATATGACAAGGTGTTCCACCAGACGTTCGAGTGCCTGCCTGATGAGAAGCTCAAGAAGGCGTACGCATGCTACCTTTCGACTTTTCATGGCCCGATCATGGGCGTCTTGTACATCTCCACTGCCAAGATTGCATTTTGCAGTGACAGTCCTGTGGCGTATGTCACCGAGGATAATAAGAACCAATCTTCCATCTACAAGGTAGTTGTACCCGTTGCTCAGCTAAGATCAGTCACTCTTACGGCAAGCCAGCAGAACCCAGCAGAGAGGTACATCCAGGTGGTTTCTGTCGACAACCATGACTTTTGGTTCATGGGATTCGTCAACTACGACGGTGCCGTGAAGAGCCTCCAGGAGGCCGTTCGTGGCGGCAAGGCTTCACTTCACCATCACATGTATTTTTTGTGAACATCGCCGTTACATGTATTGATCTGTCCGTCGTTCGTCATGCATCACTGGGAATTCGCATGTGTCGGTGTGTTAAATTGTCTGTACAGATCGCTCCCCTTGCTGTGTGTATTGGCTGAAATTTGTGTTGCATATGCATTCATGTATTGTACCGCCGTGGCGGCCCTGGCCGTGGCTGACTCCGCGTCCGCCTTGGAATACATGGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10807#0 CTCATCATCATCATTCATCAATCGTCGCCTGATCGCCTCCAGCGAAATTCTTCCTCCATT 60
consensus_10807#1 ------------------------------------------------------------
consensus_10807#0 TCTCTCTCCATCGAATCTCATCCCAGCAGCAGCAGCAGCAGCAGCAGCCGCCATGGATTC 120
consensus_10807#1 ------------------------------------------------------------
consensus_10807#0 CAAGGCGGACGCGGAGTCAGCCACGGCCAGGGCCGCCCGTCGTGTCGCCGCCCGTCTCCG 180
consensus_10807#1 ------------------------------------------------------------
consensus_10807#0 CCAACCCCTACGTGGTCTCCGCCCCCTCCGCTCAGCCGCCCGCCAAGAGCGCCAGGGAGA 240
consensus_10807#1 ------------------------------------------------------------
consensus_10807#0 ATCTCCGGGAGAAGCTCGACGTGGTCGGGAGGAGGTTCGGGGACGCCGCGCGCAAGACCG 300
consensus_10807#1 ------------------------------------------------------------
consensus_10807#0 AGGGCATCGTCGGCGACATCTGGCAGCATCTGAAAACTGGGCCAAGCATTGCTGATACGG 360
consensus_10807#1 ------------------------------------------------------------
consensus_10807#0 CGATGGGGAGGATTGCTCAGATATCCAAGGTGATAGCTGAAGGTGGATATGACAAGGTGT 420
consensus_10807#1 -------------------------------------TGAAGGTGGATATGACAAGGTGT 23
***********************
consensus_10807#0 TCCACCAGACGTTCGAGTGCCTGCCTGATGAGAAGCTCAAGAAGGCGTACGCATGCTACC 480
consensus_10807#1 TCCACCAGACGTTCGAGTGCCTGCCTGATGAGAAGCTCAAGAAGGCGTACGCATGCTACC 83
************************************************************
consensus_10807#0 TTTCGACCTCTCATGGCCCGATCATGGGCGTCTTGTACATCTCCACTGCCAAGATTGCAT 540
consensus_10807#1 TTTCGACTTTTCATGGCCCGATCATGGGCGTCTTGTACATCTCCACTGCCAAGATTGCAT 143
******* * **************************************************
consensus_10807#0 TTTGCAGTGACAGTCCTGTGGCGTATGTCACCGAGGATAATAAGAACCAATCTTCCATCT 600
consensus_10807#1 TTTGCAGTGACAGTCCTGTGGCGTATGTCACCGAGGATAATAAGAACCAATCTTCCATCT 203
************************************************************
consensus_10807#0 ACAAGGTAGTTGTACCCGTTGCTCAGCTAAGATCAGTCACTCCTACGGCAAGCCAGCAGA 660
consensus_10807#1 ACAAGGTAGTTGTACCCGTTGCTCAGCTAAGATCAGTCACTCTTACGGCAAGCCAGCAGA 263
****************************************** *****************
consensus_10807#0 ACCCAGCAGAGAGGTACATCCAGGTGGTTTCTGTCGACAACCATGACTTCTGGTTCATGG 720
consensus_10807#1 ACCCAGCAGAGAGGTACATCCAGGTGGTTTCTGTCGACAACCATGACTTTTGGTTCATGG 323
************************************************* **********
consensus_10807#0 GCTTCGTCAACTACGACGGTGCCGTGAAGAGCCTCCAGGAGGCCGTTCGTGGCGGCAAGG 780
consensus_10807#1 GATTCGTCAACTACGACGGTGCCGTGAAGAGCCTCCAGGAGGCCGTTCGTGGCGGCAAGG 383
* **********************************************************
consensus_10807#0 CTTCACTTCACCATCACATGTATTTTTTGTGAACATCGCCGTTACATGTATTGATCTGTC 840
consensus_10807#1 CTTCACTTCACCATCACATGTATTTTTTGTGAACATCGCCGTTACATGTATTGATCTGTC 443
************************************************************
consensus_10807#0 CGTCGTTCGTCATGCATCACTGGGAATTCGCATGTGTCGGTGTGTTAAATTGTCTGTACA 900
consensus_10807#1 CGTCGTTCGTCATGCATCACTGGGAATTCGCATGTGTCGGTGTGTTAAATTGTCTGTACA 503
************************************************************
consensus_10807#0 GATCGCTCCCCTTGCTGTGTGTATTGGCTGAAATTTGTGTTGCATATGCATTCATGTATT 960
consensus_10807#1 GATCGCTCCCCTTGCTGTGTGTATTGGCTGAAATTTGTGTTGCATATGCATTCATGTATT 563
************************************************************
consensus_10807#0 GTAT-GTAGTGTGTGGACTAGATGTGTACAAATACTGGATTGATTGTTGGCTTGATGCTC 1019
consensus_10807#1 GTACCGCCGTGGCGGCCCTGGCCGTG-GCTGACTCCGCGTCCGCCTTGGAATACATGGCG 622
*** * *** * ** * *** * * * * * * * * ***
consensus_10807#0 CATTAAAGCCTTTCTGTTCGTTGTTCCCCAAAAAAAAAA 1058
consensus_10807#1 ---------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||