cluster # 10814

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Oryza sativa
cluster # 10814 cluster # 10814 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10814#0 length = 814 sequences # 6

consensus_10814#1 length = 687 sequences # 2

consensusID : consensus_10814#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 814
fasta sequence

                              [GCAACGACTTGGGTTTTAGGTCGTCGCGGCCGAAAAAAAT-TC-AATCTCTG-CGCGAAT-CATTGG-CGTAGGCCAGCCTGGG-AGAGAGGAAGGAAGCATCTTCCTGTGCC-CTC-CTTACCCTCTTCGTCTTCTTCTCCATCTCCTTGTGTGCTCAGTAGCTTCTCCTCCTACGAAACCAACCAGCTGCCGCCGGTGACCGTCGAT-CCGTCGACCGCCGCCGCCATGAGCAGCGATGTTCCTGGGT-ACTTCGTGGGGCGGCCGATGAACCAAGCGGAGCCTGCGAAAGAACAGCAGCAGGGCGCCGACGAGCAGCGGCCTGCTACCAACGCGCAGATCCCTGGTGACTACTTCGTCGGGCGTCCGGCAAACCCGCAGCAGCCGCCGTCGCAACCTCCGCGGGCGCAGGAGAGATCGAGCTTCTT-GGCCAAATGCTGCCCATGCCTCGACAGCCGAGCTGAGGGATAGACGAACAAGTGCGGCGGCGGGCGTGACCGTAAATTCGAT-GGGAAAA-TTGAAGCAAATTTGCTTGGAGTGATAAGGCTCGGATCTGTGTTTGTGTTGCAAGTTTTGCTAATAGATGTTTGTAACTGAAGGTTGCTTCTATTCATTTGTATACCAATTGTTCATTCGTATCATCAGAGTGCGAATTCGATGAAATTGTCCATTCCAATCCGGCATGCCTTTTCTCCTTCCTT-GAAAAAAAATTCTGCTCCATTGCTGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]

[+] EMBL AU057046             [GCAACGACTTGGGTTTTAGGTCGTCGCGGCCGAAAAAAATATC AATCTCTG CGCGAAT CATTGG CGTAGGCCAGCCTGGG AGAGAGGAAGGAAGCATCTTCCTGTGCCTCTC CTTACCCTCTTCGTCTTCTTCTCCATCTCCTTGTGTGCTCAGTAGCTTCTCCTCCTACGAAACCAACCAGCTGCCGCCGGTGACCGTCGAT CCGTCGACCGCCGCCGCCATGAGCAGCGATGTTCCTGGGT ACTTCGTGGGGCGGCCGATGAACCAAGCGGAGCCTGCGAAAGAACAGCAGCAGGGCGCCGACGAGCAGCGGCCTGCTACCAACGCGCAGATCCCTGGTGACTACTTCGTCGGGCGTCCGGCAAACCCGCAGCAGCCGCCGTCGCAACCTCCGCGGGCGCA GAGAGATCGAGCTTCTTGGGCCAAATGCTGCC                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU057047             [                                      AT TCAAATCTTTGCCCCGAATNCATTGGCCGTAGGCCACCTTGGGAAGAGAGGAAGGAAGCNTCTTCCTGTGCC CTCTCTTACCTTCTTCGTCTTCTTCTCCATCTCCTTGTGTGCTCAGTAGCTTCTCCTCCTACGAAACCAACCAGCTNCCGCCGGTGACCGTCGATCCCGTCGACCGCCGCCGCCATGAGCAGCGATGTTCCTGGGTAACTTCGTGGGGCGGCCGATGAACCAAGCGGAGCCTGCGAAAGAACAGCAGCAGGGCGCCGACGAGCAGCGGCCTGCTACCAACGCGCAGATCCCTGGTGACTA TTCGTCGGGCGTCCGGCAAACCCGCAGCAGCCGCCGTCGCAACCTCCGCGGGCGCAGGAGAGATCGAGCTTCTT GGCCAAATGCTGCCCATGCCTCGACAGCCGAGCTGAGGGATAGACGAACAAGTGCGGCGGCGGGCGTGACCGTAAATTCGAT GGGAAAA TTGAAGCAAATTTGCTTGGAGTGATAAGGCTCGGATCTGTGTTTGTGTTGCAAGTTTTGCTAATAGATGTTTGTAACTGAAGGTTGCTTCTATTCATTTGTATACCAATTGTTCATTCGTATCATCAGAGTGCGAATTCGATGAAAaaaa                                                                                                                                                             ]
[+] EMBL OSC8121              [                                                                                                    ATCTTCCTGTGCCTCTC CTTACCCTCTTCGTCTTCTTCTCCATCTCCTTGTGTGCTCAGTAGCTTCTCCTCCTACGAAACCAACCAGCTGCCGCCGGTGACCGTCGAT CCGTCGACCGCCGCCGCCATGAGCAGCGATGTTCCTGGGT ACTTCGTGGGGCGGCCGATGAACCAAGCGGAG CTGCGAAAGAACAGCAGCAGGGCGCCGACGAGCAGCGGNCTGCTACCAACGCGCAGATCCCTGGTGACTACTTCGTCGGGCGTCCGGCAAACCCGCAGCAGCCGCCGTCGCAACCTCCGCGGGCGCAGGAGAGATCGAGCTTCTT GGNCAAATGCTGNCCATGCCTCGA                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CF292156             [                                                                                                                                         gagtagaaaCCTTGTGTGCTCAGTAGCTTCTCCTCCTACGAAACCAACCAGCTGCCGCCGGTGACCGTCGAT CCGTCGACCGCCGCCGCCATGAGCAGCGATGTTCCTGGGT ACTTCGTGGGGCGGCCGATGAACCAAGCGGAGCCTGCGAAAGAACAGCAGCAGGGCGCCGACGAGCAGCGGCCTGCTACCAACGCGCAGATCCCTGGTGACTACTTCGTCGGGCGTCCGGCAAACCCGCAGCAGCCGCCGTCGCAACCTCCGCGGGCGCAGGAGAGATCGAGCTTCTT GGCCAAATGCTGCCCATGCCTCGACAGCCGAGCTGAGGGATAGACGAACAAGTGCGGCGGCGGGCGTGACCGTAAATTCGAT GGGAAAA TTGAAGCAAATTTGCTTGGAGTGATAAGGCTCGGATCTGTGTTTGTGTTGCAAGTTTTGCTAATAGATGTTTGTAACTGAAGGTTGCTTCTATTCATTTGTATACCAATTGTTCATTCGTATCATCAGAGTGCGAATTCGATGAAATTGTCCATTCCAATCCGGCATGCCTTTTCTCCTTCCTT GAAAAAAA                                                                                                                  ]
[+] EMBL OS1321750            [                                                                                                                                                                 AGCTTCTCCTCCTACGAAACCAACCAGCTGCCGCCGGTGACCGTCGAT CCGTCGACCGCCGCCGCCATGAGCAGCGATGTTCCTGGGT ACTTCGTGGGGCGGCCGATGAACCAAGCGGA NCTGCGAAAGAACAGCAGCAGGGCGCCGACGAGCAGCGGCCTGCTACCAACGCGCAGATCCCTGGTGACTACTTCGTCGGGCGTCCGGCAAACCCGCAGCAGCCGCCGTCGCAACCTCCGCGGGCGCAGGAGAGATCGAGCTTCTT GGCCAAATGCTGCCCATGCCTCGACAGCCGAGCTGAGGGATAGACGAACAAGTTCGGCGGCGGGCGTNACCGTAAATTCGATGGGGAAAATTTGAAGCAAAATTt                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CA755923             [                                                                                                                                                                                                        ACCGTCGAT CCGTCGACCGCCGCCGCCATGAGCAGCGATGTTCCTGGGT ACTTCGTGGGGCGGCCGATGAACCAAGCGGAGCCTGCGAAAGAACAGCAGCAGGGCGCCGACGAGCAGCGGCCTGCTACCAACGCGCAGATCCCTGGTGACTACTTCGTCGGGCGTCCGGCAAACCCGCAGCAGCCGCCGTCGCAACCTCCGCGGGCGCAGGAGAGATCGAGCTTCTT GGCCAAATGCTGCCCATGCCTCGACAGCCGAGCTGAGGGATAGACGAACAAGTGCGGCGGCGGGCGTGACCGTAAATTCGAT GGGAAAA TTGAAGCAAATTTGCTTGGAGTGATAAGGCTCGGATCTGTGTTTGTGTTGCAAGTTTTGCTAATAGATGTTTGTAACTGAAGGTTGCTTCTATTCATTTGTATACCAATTGTTCATTCGTATCATCAGAGTGCGAATTCGATGAAATTGTCCATTCCAATCCGGCATGCCTTTTCTCCTTCCTTNGAATGAATATTCTGCTCCATTGCTGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]




>consensus_10814#0
GCAACGACTTGGGTTTTAGGTCGTCGCGGCCGAAAAAAATTCAATCTCTGCGCGAATCAT
TGGCGTAGGCCAGCCTGGGAGAGAGGAAGGAAGCATCTTCCTGTGCCCTCCTTACCCTCT
TCGTCTTCTTCTCCATCTCCTTGTGTGCTCAGTAGCTTCTCCTCCTACGAAACCAACCAG
CTGCCGCCGGTGACCGTCGATCCGTCGACCGCCGCCGCCATGAGCAGCGATGTTCCTGGG
TACTTCGTGGGGCGGCCGATGAACCAAGCGGAGCCTGCGAAAGAACAGCAGCAGGGCGCC
GACGAGCAGCGGCCTGCTACCAACGCGCAGATCCCTGGTGACTACTTCGTCGGGCGTCCG
GCAAACCCGCAGCAGCCGCCGTCGCAACCTCCGCGGGCGCAGGAGAGATCGAGCTTCTTG
GCCAAATGCTGCCCATGCCTCGACAGCCGAGCTGAGGGATAGACGAACAAGTGCGGCGGC
GGGCGTGACCGTAAATTCGATGGGAAAATTGAAGCAAATTTGCTTGGAGTGATAAGGCTC
GGATCTGTGTTTGTGTTGCAAGTTTTGCTAATAGATGTTTGTAACTGAAGGTTGCTTCTA
TTCATTTGTATACCAATTGTTCATTCGTATCATCAGAGTGCGAATTCGATGAAATTGTCC
ATTCCAATCCGGCATGCCTTTTCTCCTTCCTTGAAAAAAAATTCTGCTCCATTGCTGGCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

consensusID : consensus_10814#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 687
fasta sequence

                              [CTTGTGTGCTCAGTAGCTTCTCCTCCTACGAAACCAACCAGCTGCCGCCGGTGACCGTCGATCCGTCGACCGCCGCCGCCATGAGCAGCGATGTTCCTGGGTACTTCGTGGGGCGGCCGATGAACCAAGCGGAGCCCGCGAAAGAACAGCAGCAGGGCGCCGACGAGCAGCGTCCTGCTACCAACGCGCAGATCCCTGGTGACTACTTCGTCGGGCGTCCGGCAAACCCGCAGCAGCCGCCGTCGCAACCTCCGCGGGCGCAGGAGAGATCGAGCTTCTTGGCCAAATGGTACTCCAATTTGTTCTTCGAAAATCGAACAATAATTGTTTAGATTGTATTAGATTTCATATCGATTTGTCACTCTGATGCTTTGCTCTTGCTGATTTCTCTGTTTCGTTTCTGCAGCTGCCCATGCCTCGACAGCCGAGCTGAGGGATAGACGAACAAGTGCGGCGGCGGGCGTGACCGTAAATTCGATGGGAAAATTGAAGCAAATTTGCTTGGAGTGGTAAGGCTCGGATCTGTGTTTGTGTTGCAAGTTTTGCTAATAGATGTTTGTAACTGAAGGTTGCTTCTATTCATTTGTATACCAATTGTTCATTCGTATCATCAGAGTGCGAATTCGATGAAATTGTCCATTCCAATCCGGCATGCCTTTTCTCCTTCCTTGAAAGAATATTCTGCTC]

[+] EMBL AK059194             [CTTGTGTGCTCAGTAGCTTCTCCTCCTACGAAACCAACCAGCTGCCGCCGGTGACCGTCGATCCGTCGACCGCCGCCGCCATGAGCAGCGATGTTCCTGGGTACTTCGTGGGGCGGCCGATGAACCAAGCGGAGCCCGCGAAAGAACAGCAGCAGGGCGCCGACGAGCAGCGTCCTGCTACCAACGCGCAGATCCCTGGTGACTACTTCGTCGGGCGTCCGGCAAACCCGCAGCAGCCGCCGTCGCAACCTCCGCGGGCGCAGGAGAGATCGAGCTTCTTGGCCAAATGGTACTCCAATTTGTTCTTCGAAAATCGAACAATAATTGTTTAGATTGTATTAGATTTCATATCGATTTGTCACTCTGATGCTTTGCTCTTGCTGATTTCTCTGTTTCGTTTCTGCAGCTGCCCATGCCTCGACAGCCGAGCTGAGGGATAGACGAACAAGTGCGGCGGCGGGCGTGACCGTAAATTCGATGGGAAAATTGAAGCAAATTTGCTTGGAGTGGTAAGGCTCGGATCTGTGTTTGTGTTGCAAGTTTTGCTAATAGATGTTTGTAACTGAAGGTTGCTTCTATTCATTTGTATACCAATTGTTCATTCGTATCATCAGAGTGC                                                                    ]
[+] EMBL AK058632             [                                                                                                                                                                                                                                                                                                                                                                                         TTGCTGATTTCTCTGTTTCGTTTCTGCAGCTGCCCATGCCTCGACAGCCGAGCTGAGGGATAGACGAACAAGTGCGGCGGCGGGCGTGACCGTAAATTCGATGGGAAAATTGAAGCAAATTTGCTTGGAGTGATAAGGCTCGGATCTGTGTTTGTGTTGCAAGTTTTGCTAATAGATGTTTGTAACTGAAGGTTGCTTCTATTCATTTGTATACCAATTGTTCATTCGTATCATCAGAGTGCGAATTCGATGAAATTGTCCATTCCAATCCGGCATGCCTTTTCTCCTTCCTTGAAAGAATATTCTGCTC]




>consensus_10814#1
CTTGTGTGCTCAGTAGCTTCTCCTCCTACGAAACCAACCAGCTGCCGCCGGTGACCGTCG
ATCCGTCGACCGCCGCCGCCATGAGCAGCGATGTTCCTGGGTACTTCGTGGGGCGGCCGA
TGAACCAAGCGGAGCCCGCGAAAGAACAGCAGCAGGGCGCCGACGAGCAGCGTCCTGCTA
CCAACGCGCAGATCCCTGGTGACTACTTCGTCGGGCGTCCGGCAAACCCGCAGCAGCCGC
CGTCGCAACCTCCGCGGGCGCAGGAGAGATCGAGCTTCTTGGCCAAATGGTACTCCAATT
TGTTCTTCGAAAATCGAACAATAATTGTTTAGATTGTATTAGATTTCATATCGATTTGTC
ACTCTGATGCTTTGCTCTTGCTGATTTCTCTGTTTCGTTTCTGCAGCTGCCCATGCCTCG
ACAGCCGAGCTGAGGGATAGACGAACAAGTGCGGCGGCGGGCGTGACCGTAAATTCGATG
GGAAAATTGAAGCAAATTTGCTTGGAGTGGTAAGGCTCGGATCTGTGTTTGTGTTGCAAG
TTTTGCTAATAGATGTTTGTAACTGAAGGTTGCTTCTATTCATTTGTATACCAATTGTTC
ATTCGTATCATCAGAGTGCGAATTCGATGAAATTGTCCATTCCAATCCGGCATGCCTTTT
CTCCTTCCTTGAAAGAATATTCTGCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10814#0      GCAACGACTTGGGTTTTAGGTCGTCGCGGCCGAAAAAAATTCAATCTCTGCGCGAATCAT 60
consensus_10814#1      ------------------------------------------------------------
                                                                                   

consensus_10814#0      TGGCGTAGGCCAGCCTGGGAGAGAGGAAGGAAGCATCTTCCTGTGCCCTCCTTACCCTCT 120
consensus_10814#1      ------------------------------------------------------------
                                                                                   

consensus_10814#0      TCGTCTTCTTCTCCATCTCCTTGTGTGCTCAGTAGCTTCTCCTCCTACGAAACCAACCAG 180
consensus_10814#1      -------------------CTTGTGTGCTCAGTAGCTTCTCCTCCTACGAAACCAACCAG 41
                                          *****************************************

consensus_10814#0      CTGCCGCCGGTGACCGTCGATCCGTCGACCGCCGCCGCCATGAGCAGCGATGTTCCTGGG 240
consensus_10814#1      CTGCCGCCGGTGACCGTCGATCCGTCGACCGCCGCCGCCATGAGCAGCGATGTTCCTGGG 101
                       ************************************************************

consensus_10814#0      TACTTCGTGGGGCGGCCGATGAACCAAGCGGAGCCTGCGAAAGAACAGCAGCAGGGCGCC 300
consensus_10814#1      TACTTCGTGGGGCGGCCGATGAACCAAGCGGAGCCCGCGAAAGAACAGCAGCAGGGCGCC 161
                       *********************************** ************************

consensus_10814#0      GACGAGCAGCGGCCTGCTACCAACGCGCAGATCCCTGGTGACTACTTCGTCGGGCGTCCG 360
consensus_10814#1      GACGAGCAGCGTCCTGCTACCAACGCGCAGATCCCTGGTGACTACTTCGTCGGGCGTCCG 221
                       *********** ************************************************

consensus_10814#0      GCAAACCCGCAGCAGCCGCCGTCGCAACCTCCGCGGGCGCAGGAGAGATCGAGCTTCTTG 420
consensus_10814#1      GCAAACCCGCAGCAGCCGCCGTCGCAACCTCCGCGGGCGCAGGAGAGATCGAGCTTCTTG 281
                       ************************************************************

consensus_10814#0      GCCAAATG---------------------------------------------------- 428
consensus_10814#1      GCCAAATGGTACTCCAATTTGTTCTTCGAAAATCGAACAATAATTGTTTAGATTGTATTA 341
                       ********                                                    

consensus_10814#0      ------------------------------------------------------------
consensus_10814#1      GATTTCATATCGATTTGTCACTCTGATGCTTTGCTCTTGCTGATTTCTCTGTTTCGTTTC 401
                                                                                   

consensus_10814#0      -----CTGCCCATGCCTCGACAGCCGAGCTGAGGGATAGACGAACAAGTGCGGCGGCGGG 483
consensus_10814#1      TGCAGCTGCCCATGCCTCGACAGCCGAGCTGAGGGATAGACGAACAAGTGCGGCGGCGGG 461
                            *******************************************************

consensus_10814#0      CGTGACCGTAAATTCGATGGGAAAATTGAAGCAAATTTGCTTGGAGTGATAAGGCTCGGA 543
consensus_10814#1      CGTGACCGTAAATTCGATGGGAAAATTGAAGCAAATTTGCTTGGAGTGGTAAGGCTCGGA 521
                       ************************************************ ***********

consensus_10814#0      TCTGTGTTTGTGTTGCAAGTTTTGCTAATAGATGTTTGTAACTGAAGGTTGCTTCTATTC 603
consensus_10814#1      TCTGTGTTTGTGTTGCAAGTTTTGCTAATAGATGTTTGTAACTGAAGGTTGCTTCTATTC 581
                       ************************************************************

consensus_10814#0      ATTTGTATACCAATTGTTCATTCGTATCATCAGAGTGCGAATTCGATGAAATTGTCCATT 663
consensus_10814#1      ATTTGTATACCAATTGTTCATTCGTATCATCAGAGTGCGAATTCGATGAAATTGTCCATT 641
                       ************************************************************

consensus_10814#0      CCAATCCGGCATGCCTTTTCTCCTTCCTTGAAAAAAAATTCTGCTCCATTGCTGGCNNNN 723
consensus_10814#1      CCAATCCGGCATGCCTTTTCTCCTTCCTTGAAAGAATATTCTGCTC-------------- 687
                       ********************************* ** *********              

consensus_10814#0      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 783
consensus_10814#1      ------------------------------------------------------------
                                                                                   

consensus_10814#0      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 814
consensus_10814#1      -------------------------------