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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10864#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1452 fasta sequence
[AAGGATTCTGGTAGGTATTGGAGAAGGTGTATCACCATCAGCTGCTACAGATTTGATTGCAAGGTCCATCCCTGTTCAAGAACGATCAAGAGCAGTTGCTGTTGTGTTTGGTGGTTTGAGCTTTGGAAGCGTATTAGGACTATTGTTCGCCCCACCTATTATTCAGAACCTTGGCTGGGAATCTGTCTTTTACATATTTGGACTTCTTGGAATTATTTGGTGTCTAGGGTTTCAATCTCTTAAAGAACAACAGTTAAGGGGCAATGAAGATATACAAGTAATACAAGATTTGGGGCAGAGTCCTTCTGGATCAAGTGACCTCATCTCGTCCTCTGTGTCTCCAAAATCATCGGAGTCATCATTGGGAGAGCTGATGAATTCACTAAAGGATGTTCCTTGGAGAGAATTTTTCAAAAGCAAGGCAGTGTGGGCAATGATATATGCTCACTTTTGTGGAAGCTGGGGGCACTATACTTGCTTGTCTTGGCTACCAACATTCTTTAGTGAGGAGCTGGACCTGAATTTGACTGAAGCATCATGGGTGTCAGTCCTTCCTCCTTTGGGCTCAATGATCATTACATCTATTGCTGCACCTTTTGCAGACAACTTGATATCAAATGGAGTAGACACCACAAAGGTACGAAAGATATGTCAAACAATTGCATTTCTGTCACCTGCAACTTTCATGATGCTTTCCTCTGTGGATCTTGGTGTGCCACCGTGGGAAATTGTTGCTTTTCTTACAAGTGGTCTGGCACTCTCCAGCTTCGCATTGTCAGGTCTTTATTGCACCCATCAAGATATTTCTCGTGAGTATGCAAGCATTCTGCTGGGCATCACAAACACTGTAGGTGCTGTACCTGGAATAGTTGGCGTTGCACTAACAGGCTATCTTCTTGATACAACTCATTCTTGGAGTATATCACTTTTCGCACCTTCGATATTTTTTTACCTGACGGGTACTGCTGTCTGGCTAGCATTTGCCA-GCAGTGAGCCTCAGGAGTTTTCGAAGTCAGAACCGGAGTCGTCGTGAGTCATGACTTGGATGGCAAATAGTATATA-CAGTTCCCA-GAGGGGATCAGTTCAGGAAGAATTTTGTCAGATGTAGTTT-CCCTG-GCAAAGCGTTGGATTTTTGGACA-TTGGACAGGAGAATACAGCTCATTGGATATTGGCAAATTTTTGGCCAATTTTAGTTTAGGCTTTTGTGTAGCGAGTGTCATTTCACGTTCTGACACGATTTCCTTTTCCATTACGGGGAGTTGCGTTGTTTTCTGCAGTAGTATCCCAGGTAACGGTAGAAGAAGTAAATTTGTTGTATCATATGACATCTTTGGGTATATGTGATGATTGATGGAGTTCATTACGACGTGATCCT-TGACCATGTATTTAGTGAATTCTTGCCAGTTCGATATTATGGATAAAGTTAGTGTTTTCGTTTATTTTCAAAAAAGA]
[+] EMBL AK059357 [AAGGATTCTGGTAGGTATTGGAGAAGGTGTATCACCATCAGCTGCTACAGATTTGATTGCAAGGTCCATCCCTGTTCAAGAACGATCAAGAGCAGTTGCTGTTGTGTTTGGTGGTTTGAGCTTTGGAAGCGTATTAGGACTATTGTTCGCCCCACCTATTATTCAGAACCTTGGCTGGGAATCTGTCTTTTACATATTTGGACTTCTTGGAATTATTTGGTGTCTAGGGTTTCAATCTCTTAAAGAACAACAGTTAAGGGGCAATGAAGATATACAAGTAATACAAGATTTGGGGCAGAGTCCTTCTGGATCAAGTGACCTCATCTCGTCCTCTGTGTCTCCAAAATCATCGGAGTCATCATTGGGAGAGCTGATGAATTCACTAAAGGATGTTCCTTGGAGAGAATTTTTCAAAAGCAAGGCAGTGTGGGCAATGATATATGCTCACTTTTGTGGAAGCTGGGGGCACTATACTTGCTTGTCTTGGCTACCAACATTCTTTAGTGAGGAGCTGGACCTGAATTTGACTGAAGCATCATGGGTGTCAGTCCTTCCTCCTTTGGGCTCAATGATCATTACATCTATTGCTGCACCTTTTGCAGACAACTTGATATCAAATGGAGTAGACACCACAAAGGTACGAAAGATATGTCAAACAATTGCATTTCTGTCACCTGCAACTTTCATGATGCTTTCCTCTGTGGATCTTGGTGTGCCACCGTGGGAAATTGTTGCTTTTCTTACAAGTGGTCTGGCACTCTCCAGCTTCGCATTGTCAGGTCTTTATTGCACCCATCAAGATATTTCTCGTGAGTATGCAAGCATTCTGCTGGGCATCACAAACACTGTAGGTGCTGTACCTGGAATAGTTGGCGTTGCACTAACAGGCTATCTTCTTGATACAACTCATTCTTGGAGTATATCACTTTTCGCACCTTCGATATTTTTTTACCTGACGGGTACTGCTGTCTGGCTAGCATTTGCCA GCAGTGAGCCTCAGGAGTTTTCGAAGTCAGAACCGGAGTCGTCGTGAGTCATGACTTGGATGGCAAATAGTATATA CAGTTCCCA GAGGGGATCAGTTCAGGAAGAATTTTGTCAGATGTAGTTT CCCTG GCAAAGCGTTGGATTTTTGGACA TTGGACAGGAGAATACAGCTCATTGGATATTGGCAAATTTTTGGCCAATTTTAGTTTAGGCTTTTGTGTAGCGAGTGTCATTTCACGTTCTGACACGATTTCCTTTTCCATTACGGGGAGTTGCGTTGTTTTCTGCAGTAGTATCCCAGGTAACGGTAGAAGAAGTAAATTTGTTGTATCATATGACATCTTTGGGCATATGTGATGATTGATGGAGTTCATTACGACGTGATCCT TGACCATGTATTTAGTGAATTCTTGCCAGTTCGATATTATGGATAAAGTTAGTGTTTTC ]
[-] EMBL CB660783 [ ATGGGTGTCAGTCCTTCCTCCTTTGGGCTCAATGATCATTACATCTATTGCTGCACCTTTTGCAGACAACTTGATATCAAATGGAGTAGACACCACAAAGGTACGAAAGATATGTCAAACAATTGCATTTCTGTCACCTGCAACTTTCATGATGCTTTCCTCTGTGGATCTTGGTGTGCCACCGTGGGAAATTGTTGCTTTTCTTACAAGTGGTCTGGCACTCTCCAGCTTCGCATTGTCAGGTCTTTATTGCACCCATCAAGATATTTCTCGTGAGTATGCAAGCATTCTGCTGGGCATCACAAACACTGTAGGTGCTGTACCTGGAATAGTTGGCGTTGCACTAACAGGCTATCTTCTTGATACAACTCATTCTTGGAGTATATCACTTTTCGCACCTTCGATATTTTTTTACCTGACGGGTACTGCTGTCTGGCTAGCATTTGCCA GCAGTGAGCCTCAGGAGTTTTCGAAGTCAGAACCGGAGTCGTCGTGAGTCATGACTTGGATGGCAAATAGTATATA CAGTTCCCA GAGGGGATCAGTTCAGGAAGAATTTTGTCAGATGTAGTTT CCCTG GCAAAGCGTTGGATTTTTGGACA TTGGACAGGAGAATACAGCTCATTGGATATTGGCAAATTTTTGGCCAATTTTAGTTTAGGCTTTTGTGTAGCGAGTGTCATTTCACGTTCTGACACGATTTCCTTTTCCATTACGGGGAGTTGCGTTGTTTTCTGCAGTAGTATCCCAGGTAACGGTAGAAGAAGTAAATTTGTTGTATCATATGACATCTTGGGGTATATGTGATGATTG ]
[-] EMBL CB670527 [ CAAACAATTGCATTTCTGTCACCTGCAACTTTCATGATGCTTTCCTCTGTGGATCTTGGTGTGCCACCGTGGGAAATTGTTGCTTTTCTTACAAGTGGTCTGGCACTCTCCAGCTTCGCATTGTCAGGTCTTTATTGCACCCATCAAGATATTTCTCGTGAGTATGCAAGCATTCTGCTGGGCATCACAAACACTGTAGGTGCTGTACCTGGAATAGTTGGCGTTGCACTAACAGGCTATCTTCTTGATACAACTCATTCTTGGAGTATATCACTTTTCGCACCTTCGATATTTTTTTACCTGACGGGTACTGCTGTCTGGCTAGCATTTGCCA GCAGTGAGCCTCAGGAGTTTTCGAAGTCAGAACCGGAGTCGTCGTGAGTCATGACTTGGATGGCAAATAGTATATA CAGTTCCCA GAGGGGATCAGTTCAGGAAGAATTTTGTCAGATGTAGTTT CCCTG GCAAAGCGTTGGATTTTTGGACA TTGGACAGGAGAATACAGCTCATTGGATATTGGCAAATTTTTGGCCAATTTTAGTTTAGGCTTTTGTGTAGCGAGTGTCATTTCACGTTCTGACACGATTTCCTTTTCCATTACGGGGAGTTGCGTTGTTTTCTGCAGTAGTATCCCAGGTAACGGTAGAAGAAGTAAATTTGTTGTATCATATGACATCTTTGGGTATATGTGATGATTGATGGAGTTCATTACGACGTGATCCT TGACCATGTATTTAGTGAATTCTTGCCAAAGGGATATTATGGATAAAGTTAGTGTTTTCGTTTA ]
[-] EMBL CB683290 [ ATGCTTTCCTCTGTGGATCTTGGTGTGCCACCGTGGGAAATTGTTGCTTTTCTTACAAGTGGTCTGGCACTCTCCAGCTTCGCATTGTCAGGTCTTTATTGCACCCATCAAGATATTTCTCGTGAGTATGCAAGCATTCTGCTGGGCATCACAAACACTGTAGGTGCTGTACCTGGAATAGTTGGCGTTGCACTAACAGGCTATCTTCTTGATACAACTCATTCTTGGAGTATATCACTTTTCGCACCTTCGATATTTTTTTACCTGACGGGTACTGCTGTCTGGCTAGCATTTGCCA GCAGTGAGCCTCAGGAGTTTTCGAAGTCAGAACCGGAGTCGTCGTGAGTCATGACTTGGATGGCAAATAGTATATA CAGTTCCCA GAGGGGATCAGTTCAGGAAGAATTTTGTCAGATGTAGTTT CCCTG GCAAAGCGTTGGATTTTTGGACA TTGGACAGGAGAATACAGCTCATTGGATATTGGCAAATTTTTGGCCAATTTTAGTTTAGGCTTTTGTGTAGCGAGTGTCATTTCACGTTCTGACACGATTTCCTTTTCCATTACGGGGAGTTGCGTTGTTTTCTGCAGTAGTATCCCAGGTAACGGTAGAAGAAGTAAATTTGTTGTATCATATGACATCTTTGGGTATATGTGATGATTGATGGAGTTCATTACGACGTGATCCT TGACCATGTATTTAGTGAATTCTTGCCAGTTCGATATTATGGATAAAGTTAGTGTTTTCGTTTTTTTTCAAAAAAGA]
[-] EMBL CB683340 [ TTGCTTTTCTTACAAGTGGTCTGGCACTCTCCAGCTTCGCATTGTCAGGTCTTTATTGCACCCATCAAGATATTTCTCGTGAGTATGCAAGCATTCTGCTGGGCATCACAAACACTGTAGGTGCTGTACCTGGAATAGTTGGCGTTGCACTAACAGGCTATCTTCTTGATACAACTCATTCTTGGAGTATATCACTTTTCGCACCTTCGATATTTTTTTACCTGACGGGTACTGCTGTCTGGCTAGCATTTGCCA GCAGTGAGCCTCAGGAGTTTTCGAAGTCAGAACCGGAGTCGTCGTGAGTCATGACTTGGATGGCAAATAGTATATA CAGTTCCCA GAGGGGATCAGTTCAGGAAGAATTTTGTCAGATGTAGTTT CCCTG GCAAAGCGTTGGATTTTTGGACA TTGGACAGGAGAATACAGCTCATTGGATATTGGCAAATTTTTGGCCAATTTTAGTTTAGGCTTTTGTGTAGCGAGTGTCATTTCACGTTCTGACACGATTTCCTTTTCCATTACGGGGAGTTGCGTTGTTTTTTGCAGTAGTATCCCAGGTAACGGTAGAAGAAGTAAATTTGTTGTATCATATGACATCTTTGGGTATATGTGATGATTGATGGAGTTCATTACGACGTGATCCT TGACCATGTATTTAGTGAATTCTTGCCAGTTCGATGTTATGGATAAAGTTAGTGTTTTCGTTTTTTTTCAAAAAggg]
[+] EMBL BI812957 [ ACTAACAGGCTATCTTCTTGATAC ACTCATTCTTGGAGTATATCACTTTTC CACCTTCGATATTTTTTTACCTGACGGGTACTGCTGTCTGGCTA CATTTGCCA CAGTGAGCCTCAGGAGTTTTCGAAGTCAGAACCGGAGTCGTCGTGAGTCATGACTTGGATGGC AATAGTATATACCAGTTCCCACGAGGGGATCCGTTCAGGAAGAATTTTGTCAGATGTAGTTT CCCTGCGC AAGCGTTGGATTTTTGGACACTTGGACCGGAGAATACAGCTCATTGGATATT GCCAATTTTTGGCCCATTTTAGTTTAGGCTTTTGTGTAGCGAGTGTCATTTCACGTTCTGACACGATTTCCTTTTCCATTACGGGGAGTTGCGTTGTTTTCTGCAGTAGTATCCCAGGTAACGGTAGAAGAAGTAAATTTGTTGTATCATATGACATCTTTGGGTATATGTGATGATTGATGGAGTTCATTACGACGTGATCCTCTGACCATGTATTTAGTGAATTCTTGCCCGTTCGATATTATGGATAAAGTTAGTGTTTTCGTTTAaaaa ]
[+] EMBL BI812961 [ ACA GCTATCTTCTTGATACAACTCATTCTTGGAGTATATCACTTTTC CACCTTCGATATTTTTTTACCTGACGGGTACTGCTGTCTGGCTAGCATTTGCCACCCAGTGAGCCTCAGGAGTTTTCGAAGTCAGAACCGGAGTCGTCGTGAGTCATGACTTGGATGGCAAATAGTATATA CCGTTCCCACGAGGGGATCAGTTCAGGAAGAATTTTGTCAGATGTAGTTTCCCCTG GCAAAGCGTTGGATTTTTGGACA TTGGACAGGAGAATACAGCTCATTGGATATT GCAA TTTTGGCCCATTTTAGTTTAGGCTTTTGTGTAGCGAGTGTCATTTCACGTTCTGACACGATTTCCTTTTCCATTACGGGGAGTTGCGTTGTTTTCTGCAGTAGTATCCCAGGTAACGGTAGAAGAAGTAAATTTGTTGTATCATATGACATCTTTGGGTATATGTGATGATTGATGGAGTTCATTACGACGTGATCCT TGACCATGTATTTAGTGAATTCTTGCC GTTCGATATTATGGATAAAGTTAGTGTTTTCGTTTAaaaa ]
consensusID : consensus_10864#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 361 fasta sequence
[CAACTTGATATCAAATGGAGTAGACCCCACAAAGGTACGAAAGATATGTCAAACAATTGCATTTCTGTCACCTGCAACTTTCATGATGCTTTCCTCTGTGGATCTTGGTGTGCCACCGTGGGAAATTGTTGCTTTTCTTACAAGTGGTCTGGCACTCTCCAGCTTCGCATTGTCAGGTCTTTATTGCACCCATCAAGATATTTCTCGTGAGTATGCAAGCATTCTGCTGGGCATCACAAACACTGTAGGTGCTGTACCTGGAATAGTTGGCGTTGCACTAACAGGCTATCTTTCCCATCTCCTCCCCATCCTCCTCCTCCGCCACCACCCCCATAACCGGACGCTTCTCCAGGGCGCCCGC]
[-] EMBL CB660782 [CAACTTGATATCAAATGGAGTAGACCCCACAAAGGTACGAAAGATATGTCAAACAATTGCATTTCTGTCACCTGCAACTTTCATGATGCTTTCCTCTGTGGATCTTGGTGTGCCACCGTGGGAAATTGTTGCTTTTCTTACAAGTGGTCTGGCACTCTCCAGCTTCGCATTGTCAGGTCTTTATTGCACCCATCAAGATATTTCTCGTGAGTATGCAAGCATTCTGCTGGGCATCACAAACACTGTAGGTGCTGTACCTGGAATAGTTGGCGTTGCACTAACAGGCTATCTTTCCCATCTCCTCCCCATCCTCCTCCTCCGCCACCACCCCCATAACCGGACGCTTCTCCAGGGCGCCCGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10864#0 AAGGATTCTGGTAGGTATTGGAGAAGGTGTATCACCATCAGCTGCTACAGATTTGATTGC 60
consensus_10864#1 ------------------------------------------------------------
consensus_10864#0 AAGGTCCATCCCTGTTCAAGAACGATCAAGAGCAGTTGCTGTTGTGTTTGGTGGTTTGAG 120
consensus_10864#1 ------------------------------------------------------------
consensus_10864#0 CTTTGGAAGCGTATTAGGACTATTGTTCGCCCCACCTATTATTCAGAACCTTGGCTGGGA 180
consensus_10864#1 ------------------------------------------------------------
consensus_10864#0 ATCTGTCTTTTACATATTTGGACTTCTTGGAATTATTTGGTGTCTAGGGTTTCAATCTCT 240
consensus_10864#1 ------------------------------------------------------------
consensus_10864#0 TAAAGAACAACAGTTAAGGGGCAATGAAGATATACAAGTAATACAAGATTTGGGGCAGAG 300
consensus_10864#1 ------------------------------------------------------------
consensus_10864#0 TCCTTCTGGATCAAGTGACCTCATCTCGTCCTCTGTGTCTCCAAAATCATCGGAGTCATC 360
consensus_10864#1 ------------------------------------------------------------
consensus_10864#0 ATTGGGAGAGCTGATGAATTCACTAAAGGATGTTCCTTGGAGAGAATTTTTCAAAAGCAA 420
consensus_10864#1 ------------------------------------------------------------
consensus_10864#0 GGCAGTGTGGGCAATGATATATGCTCACTTTTGTGGAAGCTGGGGGCACTATACTTGCTT 480
consensus_10864#1 ------------------------------------------------------------
consensus_10864#0 GTCTTGGCTACCAACATTCTTTAGTGAGGAGCTGGACCTGAATTTGACTGAAGCATCATG 540
consensus_10864#1 ------------------------------------------------------------
consensus_10864#0 GGTGTCAGTCCTTCCTCCTTTGGGCTCAATGATCATTACATCTATTGCTGCACCTTTTGC 600
consensus_10864#1 ------------------------------------------------------------
consensus_10864#0 AGACAACTTGATATCAAATGGAGTAGACACCACAAAGGTACGAAAGATATGTCAAACAAT 660
consensus_10864#1 ---CAACTTGATATCAAATGGAGTAGACCCCACAAAGGTACGAAAGATATGTCAAACAAT 57
************************* *******************************
consensus_10864#0 TGCATTTCTGTCACCTGCAACTTTCATGATGCTTTCCTCTGTGGATCTTGGTGTGCCACC 720
consensus_10864#1 TGCATTTCTGTCACCTGCAACTTTCATGATGCTTTCCTCTGTGGATCTTGGTGTGCCACC 117
************************************************************
consensus_10864#0 GTGGGAAATTGTTGCTTTTCTTACAAGTGGTCTGGCACTCTCCAGCTTCGCATTGTCAGG 780
consensus_10864#1 GTGGGAAATTGTTGCTTTTCTTACAAGTGGTCTGGCACTCTCCAGCTTCGCATTGTCAGG 177
************************************************************
consensus_10864#0 TCTTTATTGCACCCATCAAGATATTTCTCGTGAGTATGCAAGCATTCTGCTGGGCATCAC 840
consensus_10864#1 TCTTTATTGCACCCATCAAGATATTTCTCGTGAGTATGCAAGCATTCTGCTGGGCATCAC 237
************************************************************
consensus_10864#0 AAACACTGTAGGTGCTGTACCTGGAATAGTTGGCGTTGCACTAACAGGCTATCTTCTTGA 900
consensus_10864#1 AAACACTGTAGGTGCTGTACCTGGAATAGTTGGCGTTGCACTAACAGGCTATCTTTCCCA 297
******************************************************* *
consensus_10864#0 TA--CAACTCATTCTTGGAGTATATCACTTTTCGCACCTTCGATATTTTTTTACCTGACG 958
consensus_10864#1 TCTCCTCCCCATCCTCCTCCTCCGCCACCACCCCCATAACCGG-ACGCTTCTCCAGGGCG 356
* * * *** ** * *** * ** ** * ** * * * **
consensus_10864#0 GGTACTGCTGTCTGGCTAGCATTTGCCAGCAGTGAGCCTCAGGAGTTTTCGAAGTCAGAA 1018
consensus_10864#1 CCCGC------------------------------------------------------- 361
*
consensus_10864#0 CCGGAGTCGTCGTGAGTCATGACTTGGATGGCAAATAGTATATACAGTTCCCAGAGGGGA 1078
consensus_10864#1 ------------------------------------------------------------
consensus_10864#0 TCAGTTCAGGAAGAATTTTGTCAGATGTAGTTTCCCTGGCAAAGCGTTGGATTTTTGGAC 1138
consensus_10864#1 ------------------------------------------------------------
consensus_10864#0 ATTGGACAGGAGAATACAGCTCATTGGATATTGGCAAATTTTTGGCCAATTTTAGTTTAG 1198
consensus_10864#1 ------------------------------------------------------------
consensus_10864#0 GCTTTTGTGTAGCGAGTGTCATTTCACGTTCTGACACGATTTCCTTTTCCATTACGGGGA 1258
consensus_10864#1 ------------------------------------------------------------
consensus_10864#0 GTTGCGTTGTTTTCTGCAGTAGTATCCCAGGTAACGGTAGAAGAAGTAAATTTGTTGTAT 1318
consensus_10864#1 ------------------------------------------------------------
consensus_10864#0 CATATGACATCTTTGGGTATATGTGATGATTGATGGAGTTCATTACGACGTGATCCTTGA 1378
consensus_10864#1 ------------------------------------------------------------
consensus_10864#0 CCATGTATTTAGTGAATTCTTGCCAGTTCGATATTATGGATAAAGTTAGTGTTTTCGTTT 1438
consensus_10864#1 ------------------------------------------------------------
consensus_10864#0 ATTTTCAAAAAAGA 1452
consensus_10864#1 --------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||