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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10870#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1027 fasta sequence
[CGCCTTCCCTTCGCCTCGTCTTCTCCTCCACCTCCACCAAACTCCTCCCCCCCCCCCCCCCAACCAATCTTCCTCGAATCCTCCGGCTGCGCCACCACCCACCCCGCGCGCGTCGTCGTCGTCTTCGTCGTCTCCGCCGCCGGCTGCTCGATTGGCGCCGGCCAAGGAAGCGGCGAGGCGGATTCACTGCGAAGGCGATATGGCGGCAGCAGCAACGGCGGCCGACGCCGGCTCCGATCCCTCCGCGGCCCTCGCCGCCGCCGCCGCCACATCCACCTGCGCCCACTGCCAGCGAGAAATTCCATCGTCAAACATTGAC-TTACATTCGGCACACTGCGCACGTAACCTTCAAAAGTGTGAACACTGTGGAGAAATGGTGGCCAGAAAGCTTATGGACGAGCACTACAATGAAAGCCATGCTCCAGTAAATTGCACTCTTTGCAAGGAAATTGTAACACGCGAGATCTGGGATCTTCATAAAAGTGAACAGTGCCCACAAAGGATTGTTGCATGTGAATATTGTGAGTTTGAGTTGCCTGCGGTTGAGCTTCATGAACATCAGGATGTATGCGGAAACCGAACAGAATTTTGTCAAACATGCAAGAAGTATGTTAGACTACGTGAATGGATTGGGCATGAAATACAGTGTCATGCAAATGCAAATGCAAATGCTTCTGCACAGACATCAAGTGCCCGAATCATTCCAGAGAGAGAAGTGCGTCCTCCTCCACCAGTAAGACCGCCACGGCCTATGCATGGTGCACAGCACAAGCGTCTGCTCTTCACAATTGCGGTGACTGGAATCGCAGTTATGATTGGTTCGATACTTTTTCAGAGGGAGGAGAGTTTCTAAGTCCAGTGTCTATGGTCTCTCCCCATCGAGTTGATTCCAACAGCAACAGCATAAAGAGTTACCTTGATGTATAATTTACCCCTCATAATCAGTCTATAAAATCACTTTGTTTGTTTGATAGTACAGTCCCTGGCATGGCTTTGTTAAAAGAATTGAAATAACCATGAAGATGCC]
[+] EMBL AU094733 [CGCCTTCCCTTCGCCTCGTCTTCTCCTCCACCTCCACCAAACTCCTCCCCCCCCCCCCCCCAACCAATCTTCCTCGAATCCTCCGGCTGCGCCACCACCCACCCCGCGCGCGTCGTCGTCGTCTTCGTCGTCTCCGCCGCCGGCTGCTCGATTGGCGCCGGCCAAGGAAGCGGCGAGGCGGATTCACTGCGAAGGCGATATGGCGGCAGCAGCAACGGCGGCCGACGCCGGCTCCGATCCCTCCGCGGCCCTCGCCGCCGCCGCCGCCACATCCACCTGCGCCCACTGCCAGCGAGAAATTCCATCGTCAAACATTGAC TTACATTCGGCACACTGCGCACGTAACCTTCAAAAGTGTGAACACTGTGGAGAAATGGTGGCCAGAAAGCTTATGGACGAGCACTACAATGAAAGCCATGCTCCAGTAAATTGCACTCTTTGCAAGGAAATTGTAACACGCGAGATCTGGGATCTTCATAAAAGTGAACAGTGCCCACAAAGGATTGTTGCATGTGAATATTGTGAGTTTGAGTTGCC ]
[+] EMBL AK100833 [ TTCGCCTCGTCTTCTCCTCCACCTCCACCAAACTCCTCCCCCCCCCCCCCCCAACCAATCTTCCTCGAATCCTCCGGCTGCGCCACCACCCACCCCGCGCGCGTCGTCGTCGTCTTCGTCGTCTCCGCCGCCGGCTGCTCGATTGGCGCCGGCCAAGGAAGCGGCGAGGCGGATTCACTGCGAAGGCGATATGGCGGCAGCAGCAACGGCGGCCGACGCCGGCTCCGATCCCTCCGCGGCCCTCGCCGCCGCCGCCGCCACATCCACCTGCGCCCACTGCCAGCGAGAAATTCCATCGTCAAACATTGAC TTACATTCGGCACACTGCGCACGTAACCTTCAAAAGTGTGAACACTGTGGAGAAATGGTGGCCAGAAAGCTTATGGACGAGCACTACAATGAAAGCCATGCTCCAGTAAATTGCACTCTTTGCAAGGAAATTGTAACACGCGAGATCTGGGATCTTCATAAAAGTGAACAGTGCCCACAAAGGATTGTTGCATGTGAATATTGTGAGTTTGAGTTGCCTGCGGTTGAGCTTCATGAACATCAGGATGTATGCGGAAACCGAACAGAATTTTGTCAAACATGCAAGAAGTATGTTAGACTACGTGAATGGATTGGGCATGAAATACAGTGTCATGCAAATGCAAATGCAAATGCTTCTGCACAGACATCAAGTGCCCGAATCATTCCAGAGAGAGAAGTGCGTCCTCCTCCACCAGTAAGACCGCCACGGCCTATGCATGGTGCACAGCACAAGCGTCTGCTCTTCACAATTGCGGTGACTGGAATCGCAGTTATGATTGGTTCGATACTTTTTCAGAGGGAGGAGAGTTTCTAAGTCCAGTGTCTATGGTCTCTCCCCATCGAGTTGATTCCAACAGCAACAGCATAAAGAGTTACCTTGATGTATAATTTACCCCTCATAATCAGTCTATAAAATCACTTTGTTTGTTTGATAGTACAGTCCCTGGCATGGCTTTGTTAAAAGAATTGAAATAACCATGAAGATGCC]
[+] EMBL AU101199 [ TCCACNTCCACCAAACNCCNNNNNNNCCCCCCCCCAACCAATCTTCCTCGAATCCTCCGGCTGCGCCACNACCCACNCCGCGCGCGTCGTCGTCGTCTTCGTCGTCTCCGCCGCCGGCTGCTCGATTGGCGCCGGCCAAGGAAGCGGCGAGGCGGATTCACTGCGAAGGCGATATGGCGGCA NAGCAACGGCGGCCGACG CGGCTCCGATCCCTCCGCGGCCCTCGCCGNCGCCGCCGCCA ]
[+] EMBL AU094734 [ CATTGACTTTACATTGGGCACANTGGGCANGTACCCTTCAAAAGTGTGAACACTGTGAAGAAATGGTGGCCAGAAAGCTTATGGACGAGCACTACAATGAAAGCCATGCTCCAGTAAATTGCACTCTTTGCAAGGAAATTGTAACACGCGAGATCTGGGATCTTCATAAAAGTGAACAGTGCCCACAAAGGATTGTTGCATGTGAATATTGTGAGTTTGAGTTGCCTGCGGTTGAGCTTCATGAACATCAGGATGTATGCGGAAACCGAACAGAATTTTGTCAAACATGCAAGAAGTATGTTAGACTACGTGAATGGATTGGGCATGAAATACAGTGTCATGCAAATGCAAATGCAAATGCTTCTGCACAGACATCAAGTGCCCGAATCATTCCAGAGAGAGAAGTGCGTCCTCCTCCACCAGTAAGATCGCCACGGCCTATGCATGGTGCACAGCACAAGCGTCTGCTCTTCACAATTGCGGTGACTGGAATCGCAGTTATGATTGGTTCGATACTTTTTCAGAGGGAGGAGAGTTTCTAAGTCCAGTGTCTATGGTCTCTCCCCATCGAGTTGATTCCAACAGCAACAGCATAAAGAGTTACCTTGATGTATAATTTACCCCTCATAATCAGTCTATAAAATCACTTTGTTTGTTTGAaaaa ]
consensusID : consensus_10870#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence
[ACAGTATGCCCCGTGCCTTCGATTTATAACAANTAATATNCTATAAGATCTAGAGCTAATTGCAAAAATAATTGCCCCTTAATTCTGAAAATTATACACAAGACTATATGGCATCAACCAAATACCTTATAATACACACAATATGTAAGGAATACATCTTTTTTTTTAAGTCGTAGATATATGTTTTAATCGTACTAGTTTGAGATGCAGGATGTATGCGGAAACCGAACAGAATTTTGTCAAACATGCAAGAAGTATGTTAGACTACGTGAATGGATTGGGCATGAAATACAGTGTCATGCAAATGCAAATGCAAATGCTTCTGCACAGACATCAAGTGCCCGAATCATTCCAGAGAGAGAAGTGCGTCCTCCTCCACCAGTAAGACCGCCACGGCCTATGCATGGTGCACAGNACAAGCGTCTGCTCTTCACAATTGCGGTGACTGGAATCGCAGTTATGATTGGTTCGATACTTTTTCAGAGGGAGGAGAGTTTCTAAGTCCAGTGTCTATGGTCTCTCCCCATCGAGTTGATTCCAACAGCAACAGCATAAAGAGTTACCTTGATGTATAATTTACCCCTCATAATCAGTCTATAAAATCACTTTGTTTGTTTGATAGTACAGTCCCTGGCATGGCTTTGTTAAAAGAATTGAAATAACCATGAAGATGCCNATTATTCTCAAAAAA]
[+] EMBL AU101200 [ACAGTATGCCCCGTGCCTTCGATTTATAACAANTAATATNCTATAAGATCTAGAGCTAATTGCAAAAATAATTGCCCCTTAATTCTGAAAATTATACACAAGACTATATGGCATCAACCAAATACCTTATAATACACACAATATGTAAGGAATACATCTTTTTTTTTAAGTCGTAGATATATGTTTTAATCGTACTAGTTTGAGATGCAGGATGTATGCGGAAACCGAACAGAATTTTGTCAAACATGCAAGAAGTATGTTAGACTACGTGAATGGATTGGGCATGAAATACAGTGTCATGCAAATGCAAATGCAAATGCTTCTGCACAGACATCAAGTGCCCGAATCATTCCAGAGAGAGAAGTGCGTCCTCCTCCACCAGTAAGACCGCCACGGCCTATGCATGGTGCACAGNACAAGCGTCTGCTCTTCACAATTGCGGTGACTGGAATCGCAGTTATGATTGGTTCGATACTTTTTCAGAGGGAGGAGAGTTTCTAAGTCCAGTGTCTATGGTCTCTCCCCATCGAGTTGATTCCAACAGCAACAGCATAAAGAGTTACCTTGATGTATAATTTACCCCTCATAATCAGTCTATAAAATCACTTTGTTTGTTTGATAGTACAGTCCCTGGCATGGCTTTGTTAAAAGAATTGAAATAACCATGAAGATGCCNATTATTCTCAAAAAA]
consensusID : consensus_10870#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 518 fasta sequence
[GGATTTTTGCCATGTGAATATTGTGACGTTTGAGTTGCCCTGCGGCTTGAGCTTCATGAACCATCCACGGATGTATGCCGGAAACCCGAACAGAACTTTTGTCAAACCACTGCCAAGAAGTATGTTAGACTACCGTGAATGGACTTGGGCACTGACAATACCACGTGTCACTGCACAATGCAAATCCACAATGCTTCTGCACCAGACATCAAGTGCCCGAATCATTCCAGAGAGAGAAGTCGCGTCCTCCTCCACCAGTAAGACCGCCA-CGGCCTATG-CATGGTGCA-CAGCACAAGCGTCTGCTCTTCACA-ATTGCGGTGACTGGAATCGCAG-TTATGATTGGTTCGATACTTTTTCAGAGGGAGGAGAGTTTCTAAGTCCA-GTGTCTATGGTCTCTCCCCA-TCGA-GTTGATTCCAACAGCAACAGCATAAAGAGTTACCTTGATGTATAAT-TTACCCCTCATAA-TCAGTCTATAAAATCACTTTGTTTGTTTGAAAAAAAAATAATAAAAAAAAAAA]
[+] EMBL BI799498 [GGATTTTTGCCATGTGAATATTGTGACGTTTGAGTTGCCCTGCGGCTTGAGCTTCATGAACCATCCACGGATGTATGCCGGAAACCCGAACAGAACTTTTGTCAAACCACTGCCAAGAAGTATGTTAGACTACCGTGAATGGACTTGGGCACTGACAATACCACGTGTCACTGCACAATGCAAATCCACAATGCTTCTGCACCAGACATCAAGTGCCCGAATCATTCCAGAGAGAGAAGTCGCGTCCTCCTCCACCAGTAAGACCGCCACCGGCCTATGCCATGGTGCACCAGCACAAGCGTCTGCTCTTCACACATTGCGGTGACTGGAATCGCAGCTTATGATTGGTTCGATACTTTTTCAGAGGGAGGAGAGTTTCTAAGTCCACGTGTCTATGGTCTCTCCCCACTCGACGTTGATTCCAACAGCACCAGCATAAAGAGTTACCTTGATGTATAATCTTACCCCTCATAACTCAGTCTATAAAATCACTTTGTTTGTTTGATAAAAAAAAAA ]
[+] EMBL AT003500 [ ACCAGTAAGACCGCCA CGGCCTATG CATGGTGCA CAGCACAAGCGTCTGCTCTTCACA ATTGCGGTGACTGGAATCGCAG TTATGATTGGTTCGATACTTTTTCAGAGGGAGGAGAGTTTCTAAGTCCA GTGTCTATGGTCTCTCCCCA TCGA GTTGATTCCAACAGCAACAGCATAAAGAGTTACCTTGATGTATAAT TTACCCCTCATAA TCAGTCTATAAAATCACTTTGTTTGTTTGAAAAAAAAATAATAAAAAAAAAAA]
[+] EMBL AT003667 [ GACCGCCA CGGCCTATG CATGGTGCA CAGCACAAGCGTCTGCTCTTCACA ATTGCGGTGACTGGAATCGCAG TTATGATTGGTTCGATACTTTTTCAGAGGGAGGAGAGTTTCTAAGTCCA GTGTCTATGGTCTCTCCCCA TCGA GTTGATTCCAACAGCAACAGCATAAAGAGTTCCCTTGATGTATAAT TTACCCCTCATAA TCAGTCTATAAAATCACTTTGTTTGTTTGAAAAAAAAATAATAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10870#0 CGCCTTCCCTTCGCCTCGTCTTCTCCTCCACCTCCACCAAACTCCTCCCCCCCCCCCCCC 60
consensus_10870#2 ------------------------------------------------------------
consensus_10870#1 ------------------------------------------------------------
consensus_10870#0 CAACCAATCTTCCTCGAATCCTCCGGCTGCGCCACCACCCACCCCGCGCGCGTCGTCGTC 120
consensus_10870#2 ------------------------------------------------------------
consensus_10870#1 ------------------------------------------------------------
consensus_10870#0 GTCTTCGTCGTCTCCGCCGCCGGCTGCTCGATTGGCGCCGGCCAAGGAAGCGGCGAGGCG 180
consensus_10870#2 ------------------------------------------------------------
consensus_10870#1 ------------------------------------------------------------
consensus_10870#0 GATTCACTGCGAAGGCGATATGGCGGCAGCAGCAACGGCGGCCGACGCCGGCTCCGATCC 240
consensus_10870#2 ------------------------------------------------------------
consensus_10870#1 ------------------------------------------------------------
consensus_10870#0 CTCCGCGGCCCTCGCCGCCGCCGCCGCCACATCCACCTGCGCCCACTGCCAGCGAGAAAT 300
consensus_10870#2 ------------------------------------------------------------
consensus_10870#1 ------------------------------------------------------------
consensus_10870#0 TCCATCGTCAAACATTGACTTACATTCGGCACACTGCGCACGTAACCTTCAAAAGTGTGA 360
consensus_10870#2 ------------------------------------------------------------
consensus_10870#1 ---------------------------------------------------ACAGTATGC 9
consensus_10870#0 ACACTGTGGAGAAATGGTGGCCAGAAAGCTTATGGACGAGCACTACAATGAAAGCCATGC 420
consensus_10870#2 ------------------------------------------------------------
consensus_10870#1 CCCGTGCCTTCGATTTATAACAANTAATATNCT--ATAAGATCTAGAGCTAAT----TGC 63
consensus_10870#0 TCCAGTAAATTGCACTCTTTGCAAGGAAATTGTAACACGCGAGATCTGGGATCTTCATAA 480
consensus_10870#2 ------------------------------------------------------------
consensus_10870#1 AAAAATAA-TTGCCCCTTAATTCTGAAAATTATACACAAGACTATATGGCATCAACCAAA 122
consensus_10870#0 AAGTGAACAGTGCCCACAAAGGATTGTTGC-ATGTGAATATTGTGA-GTTTGAGTTGC-C 537
consensus_10870#2 --------------------GGATTTTTGCCATGTGAATATTGTGACGTTTGAGTTGC-C 39
consensus_10870#1 TACCTTATAATACACACAATATGTAAGGAATACATCTTTTTTTTTAAGTCGTAGATATAT 182
* * * * ** * * ** ** *
consensus_10870#0 -TGCGG-TTGAGCTTCATGAAC-ATCA--GGATGTATGCGGAAA--CCGAACAGAA-TTT 589
consensus_10870#2 CTGCGGCTTGAGCTTCATGAACCATCCACGGATGTATGCCGGAAACCCGAACAGAACTTT 99
consensus_10870#1 GTTTTAATCGTACTAGTTTGAGATGCA--GGATGTATGCGGAAA--CCGAACAGAA-TTT 237
* * * ** * * * ********** * ** ********** ***
consensus_10870#0 TGTCAAACA--TGC-AAGAAGTATGTTAGACTAC-GTGAATGGA-TTGGGCA-TGA-AAT 642
consensus_10870#2 TGTCAAACCACTGCCAAGAAGTATGTTAGACTACCGTGAATGGACTTGGGCACTGACAAT 159
consensus_10870#1 TGTCAAACA--TGC-AAGAAGTATGTTAGACTAC-GTGAATGGA-TTGGGCA-TGA-AAT 290
******** *** ******************* ********* ******* *** ***
consensus_10870#0 ACA--GTGTCA-TGCA-AATGCAAATGCA-AATGCTTCTGCAC-AGACATCAAGTGCCCG 696
consensus_10870#2 ACCACGTGTCACTGCACAATGCAAATCCACAATGCTTCTGCACCAGACATCAAGTGCCCG 219
consensus_10870#1 ACA--GTGTCA-TGCA-AATGCAAATGCA-AATGCTTCTGCAC-AGACATCAAGTGCCCG 344
** ****** **** ********* ** ************* ****************
consensus_10870#0 AATCATTCCAGAGAGAGAAGT-GCGTCCTCCTCCACCAGTAAGACCGCCACGGCCTATGC 755
consensus_10870#2 AATCATTCCAGAGAGAGAAGTCGCGTCCTCCTCCACCAGTAAGACCGCCACGGCCTATGC 279
consensus_10870#1 AATCATTCCAGAGAGAGAAGT-GCGTCCTCCTCCACCAGTAAGACCGCCACGGCCTATGC 403
********************* **************************************
consensus_10870#0 ATGGTGCACAGCACAAGCGTCTGCTCTTCACAATTGCGGTGACTGGAATCGCAGTTATGA 815
consensus_10870#2 ATGGTGCACAGCACAAGCGTCTGCTCTTCACAATTGCGGTGACTGGAATCGCAGTTATGA 339
consensus_10870#1 ATGGTGCACAGNACAAGCGTCTGCTCTTCACAATTGCGGTGACTGGAATCGCAGTTATGA 463
*********** ************************************************
consensus_10870#0 TTGGTTCGATACTTTTTCAGAGGGAGGAGAGTTTCTAAGTCCAGTGTCTATGGTCTCTCC 875
consensus_10870#2 TTGGTTCGATACTTTTTCAGAGGGAGGAGAGTTTCTAAGTCCAGTGTCTATGGTCTCTCC 399
consensus_10870#1 TTGGTTCGATACTTTTTCAGAGGGAGGAGAGTTTCTAAGTCCAGTGTCTATGGTCTCTCC 523
************************************************************
consensus_10870#0 CCATCGAGTTGATTCCAACAGCAACAGCATAAAGAGTTACCTTGATGTATAATTTACCCC 935
consensus_10870#2 CCATCGAGTTGATTCCAACAGCAACAGCATAAAGAGTTACCTTGATGTATAATTTACCCC 459
consensus_10870#1 CCATCGAGTTGATTCCAACAGCAACAGCATAAAGAGTTACCTTGATGTATAATTTACCCC 583
************************************************************
consensus_10870#0 TCATAATCAGTCTATAAAATCACTTTGTTTGTTTGATAGTACAGTCCCTGGCATGGCTTT 995
consensus_10870#2 TCATAATCAGTCTATAAAATCACTTTGTTTGTTTGAAAAAAAAATAATAAAAAAAAAAA- 518
consensus_10870#1 TCATAATCAGTCTATAAAATCACTTTGTTTGTTTGATAGTACAGTCCCTGGCATGGCTTT 643
************************************ * * * * *
consensus_10870#0 GTTAAAAGAATTGAAATAACCATGAAGATGCC---------------- 1027
consensus_10870#2 ------------------------------------------------
consensus_10870#1 GTTAAAAGAATTGAAATAACCATGAAGATGCCNATTATTCTCAAAAAA 691
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||