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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11080#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 533 fasta sequence
[AGTTGGGTCCTTTCCAAANGTCCTTCCTTNTTNTGNGAAAATTNTTTGAATTGNACCACCACNAGCGCCCCGGAACGNGAGAGGGCATTTATTTANTTATTTCCCCNAATCAATGGTTCGCGNCAGGGGAGAGGGAACAAGGGATTCGNGTGAATAATTTNGCNCCNGTTCCTTAATCCGGAATNATATTNNTCGCGGNGGTTTTCGGCATCATCTNCCGCAAGCGGAATGNGAACACNTCATTGTTCTTCCTGCCCATATCTTGATGTGAACATATCATGTATCAATTGATTAGTATCTCATGACTCACAACAGAGCAGTCTCGTACTCTCTTTGGGGGGCCAGTGTGGTTGTGATTAGTTTGGCCCTAGCTTTGATGAGCAAAAAGACATTGATTCTGAATGTCATACATACATATGTGCTGTGAGAATCCCCTCTCTGCTTTGGTTCGTTTTTGATATTATTCATACGGGAGATCGGACAGCTGAAAGCATGATATTCTCATTCTCTTTGTCATTCTTCTGAAAAAAAAA]
[+] EMBL AA753407 [AGTTGGGTCCTTTCCAAANGTCCTTCCTTNTTNTGNGAAAATTNTTTGAATTGNACCACCACNAGCGCCCCGGAACGNGAGAGGGCATTTATTTANTTATTTCCCCNAATCAATGGTTCGCGNCAGGGGAGAGGGAACAAGGGATTCGNGTGAATAATTTNGCNCCNGTTCCTTAATCCGGAATNATATTNNTCGCGGNGGTTTTCGGCATCATCTNCCGCAAGCGGAATGNGAACACNTCATTGTTCTTCCTGCCCATATCTTGATGTGAACATATCATGTATCAATTGATTAGTATCTCATGACTCACAACAGAGCAGTCTCGTACTCTCTTTGGGGGGCCAGTGTGGTTGTGATTAGTTTGGCCCTAGCTTTGATGAGCAAAAAGACATTGATTCTGAATGTCATACATACATATGTGCTGTGAGAATCCCCTCTCTGCTTTGGTTCGTTTTTGATATTATTCATACGGGAGATCGGACAGCTGAAAGCATGATATTCTCATTCTCTTTGTCATTCTTCTGAAAAAAAAA]
consensusID : consensus_11080#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 484 fasta sequence
[GCCTCCTCCTTCGCCTTCGCGGCTTCGCCTCTC-CCCACACATGCATCGCCATCGCCGTCATCGTCAGGACTAAGCTCTGCTCTGCATCTGCACCACCACCCAGCTGCAGCCCGAACAAGAAGACGAGCATCTCATCTCATCTCATCTGCCGATCGATCGATTCGCTGCAGGGAGAGCTGAACAATGGAGTTCGTGTTGATCAT-CTCGCTGCCGCTCCTCATCCTGATCATAATCGTCGCGGTGGTTCTCTGCATCATCTGCCGCTAGCTGAATGGTGACACCTCATTGTTCTTCCTGCCCATATCTTGATGTGAACATATCATGTATCAATTGATTAGTATCTCATGACTCACAACAGAGCAGTCTCGTACTCTCTTTGGGGGGCCAGTGTGGTTGTGATTAGTTTGGCCCTAGCTTTGATGAGCAAAAAGACATTGATTCTGAATGTCATACATACATATGTGCTGTGAGAAAAAAAAAAAAA]
[+] EMBL CF334876 [GCCTCCTCCTTCGCCTTCGCGGCTTCGCCTCTC TCCCCACATGCATCGCCATCGCCGTCATCGTCAGGACTAAGCTCTGCTCTGCATCTGCACCACCACCCAGCTGCAGCCCGAACAAGAAGACGAGCATCTCATCTCATCTCATCTGCCGATCGATCGATTCGCTGCAGGGAGAGCTGAACAATGGAGTTCGTGTTGATCAT CTCGCTGCCGCTCCTCATCCTGATCATAATCGTCGCGGTGGTTCTCTGCATCATCTGCCGCTAGCTGAATGGTGACACCTCATTGTTCTTCCTGCCCATATCTTGATGTGAACATATCATGTATCAATTGATTAGTATCTCATGACTCACAACAGAGCAGTCTCGTACTCTCTTTGGGGGGCCAGTGTGGTTGTGATTAGTTTGGCCCTAGCTTTGATGAGCAAAAAGACATTGATTCTGAATGTCATACATACATATGTGCTGTGAGAAAAAAA ]
[-] EMBL CF334877 [ TCCTCCTTCGCCTTCGCGGCTTCGCCTCTCTCCCACACATGCATCGCCATCGCCGTCATCGTCAGGANTAAGCTCTGCTCTGCATTTGCACCACCACCCAGCTGCAGCCCGAACAAGAAGACGAGCATCTCATCTCATCTCATCTGCCGATCGATCGATTCGCTGCAGGGAGAGCTGAACAATGGAGTTCGTGTTGATCAT CTCGCTGCCGCTCCTCATCCTGATCATAATCGTCGCGGTGGTTCTCTGCATCATCTGCCGCTAGCTGAATGGTGACACCTCATTGTTCTTCCTGCCCATATCTTGATGTGAACATATCATGTATCAATTGATTAGTATCTCATGACTCACAACAGAGCAGTCTCGTACTCTCTTTGGGGGGCCAGTGTGGTTGTGATTAGTTTGGCCCTAGCTTTGATGAGCAAAAAGACATTGATTCTGAATGTCATACATACATATGTGCTG GAGAAAAAAAA ]
[+] EMBL AU222660 [ CCCACACATGCATCGCCATCGCCGTCATCGTCAGGACTAAGCTCTGCTCTGCATCTGCACCACCACCCAGCTGCAGCCCGAACAAGAAGACGAGCATCTCATCTCATCTCATCTGCCGATCGATCGATTCGCTGCAGGGAGAGCTGAACAATGGAGTTCGTGTTGATCAT CTCGCTGCCGCTCCTCATCCTGATCATAATCGTCGCGGTGGTTCTCTGCATCATCTGCCGCTAGCTGAATGGTGACACCTCATTGTTCTTCCTGCCCATATCTTGATGTGAACATATCATGTATCAATTGATTAGTATCTCATGACTCACAACAGAGCAGTCTCGTACTCTCTTTGGGGGGCCAGTGTGGTTGTGATTAGTTTGGCCCTAGCCTTGATGAGCAAAAAGACATTGATTCTGAATGTCATACATACATATGTGCTGTGAGAAAAAAAAAA ]
[+] EMBL AU057706 [ GCAGCCCGAACAAGAAGACGAGCATCTCATCTCATCTCATCTGCCGATCGATCGATTCGCTGCAGGGAGAGCTGAACAATGGAGTTCGTGTTGATCATCCTCG TGCCGCTCCTCATCCTGATCATAATCGTCGCGGTGGTTCTCTGCATCATCTGCCGCTAGCTGAATGGTGACACCTCATTGTTCTTCCTGCCCATATCTTGATGTGAACATATCATGTATCAATTGATTAGTATCTCATGACTCACAACAGAGCAGTCTCGTACTCTCTTTGGGGGGCCAGTGTGGTTGTGATTAGTTTGGCCCTAGCCTTGATGAGCAAAAAGACATTGATTCTGAATGTCATACATACATATGTGCTGTGAGAAAAAAAAAAAAA]
consensusID : consensus_11080#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence
[CGATTCGCTGCAGGGAGAGCTGAACAATGGAGTTCGTGTTGATCATCTCGCTGCCGCTCCTCATCCGTGATCATAATCGTCGCCGGTGGTTCNTCTGCATCATTCTGCCGCATAGCTGATATGGTGACACCTACATTGTTCNTTCCTGCACCATATCTTTGATNGTGAACATAATCATGTATCAATTGATNTAGTATCTTCATGACTCACACACAGAGCAGTNCTCGTACTCTTCTTTGGGGGGCCACGTGTGGTNTGTGATTNAGTTTGGCCCTAGCNTTTGATGAGCACAAAAGACATTGATTCNTGAATGTCGATACATACATATGTGCGTGTGAGAATCCCCTCTTCTGCTTTGGTTCGTTTNTTGATATTATTCATACCGGGAGATCGGACACGCTGAAAGCATGATATTCTCATTCTCTTTGTCATTCTTCTGAAGATC]
[-] EMBL CB967241 [CGATTCGCTGCAGGGAGAGCTGAACAATGGAGTTCGTGTTGATCATCTCGCTGCCGCTCCTCATCCGTGATCATAATCGTCGCCGGTGGTTCNTCTGCATCATTCTGCCGCATAGCTGATATGGTGACACCTACATTGTTCNTTCCTGCACCATATCTTTGATNGTGAACATAATCATGTATCAATTGATNTAGTATCTTCATGACTCACACACAGAGCAGTNCTCGTACTCTTCTTTGGGGGGCCACGTGTGGTNTGTGATTNAGTTTGGCCCTAGCNTTTGATGAGCACAAAAGACATTGATTCNTGAATGTCGATACATACATATGTGCGTGTGAGAATCCCCTCTTCTGCTTTGGTTCGTTTNTTGATATTATTCATACCGGGAGATCGGACACGCTGAAAGCATGATATTCTCATTCTCTTTGTCATTCTTCTGAAGATC]
consensusID : consensus_11080#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence
[TGCAAGGGAGAGCTGAACAATGGGAGTTCGTGTTGATCATCTCGCTGCCGCTCCTCATCCTGAWCATAATCGTCGCGGTGGKTCTCTGCATCATCTGCCGCTAGCTGAATGGTGACACCTCATTGTTCTTCCTGCCCATATCTTGATGTGAACATATCATGTATCAATTGATTAGTATCTCATGACTCACAACAGAGCAGTCTCGTACTCTCTTTGGGGGGGCCAGTGTGGTTGTGATTAGTTTSGCCCTAGCTTTKATGAGCAAAAAGACATTGATTCTGAATGTCATACATACATATGTGCTGTGAGAMTCCCCTCTCTGCTTTGGTTCGTTTTTGATATTATWCATACGGGVGATCGGACAGCTGAAAGSATGATATTCTCAAAAAAAAA]
[+] EMBL BE229576 [TGCAAGGGAGAGCTGAACAATGGGAGTTCGTGTTGATCATCTCGCTGCCGCTCCTCATCCTGAWCATAATCGTCGCGGTGGKTCTCTGCATCATCTGCCGCTAGCTGAATGGTGACACCTCATTGTTCTTCCTGCCCATATCTTGATGTGAACATATCATGTATCAATTGATTAGTATCTCATGACTCACAACAGAGCAGTCTCGTACTCTCTTTGGGGGGGCCAGTGTGGTTGTGATTAGTTTSGCCCTAGCTTTKATGAGCAAAAAGACATTGATTCTGAATGTCATACATACATATGTGCTGTGAGAMTCCCCTCTCTGCTTTGGTTCGTTTTTGATATTATWCATACGGGVGATCGGACAGCTGAAAGSATGATATTCTCAAAAAAAAA]
consensusID : consensus_11080#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 354 fasta sequence
[CGAGACAAGGGGGGAGTTCGTGTTGATCTCTCGCTGCCGCTCCTCATCCTGATCTAATCGTCGCGGTGGTTCTCTGCATCATCTGCCGCTAGCTGAATGGTGACACCTCATTGTTCTTCCTGCCCATATCTTGATGTGAACATATCATGTATCAATTGATTAGTATCTCATGACTCACAACAGAGCAGTCTCGTACTCTCTTTGGGGGGCCAGTGTGGTTGTGATTAGTTTGGCCCTAGCTTTGATGAGCAAAAAGACATTGATTCTGAATGTCATACATACATATGTGCTGTGAGAATCCCCTCTCTGCTTTGGTTCGTTTTTGATATTATTATTAAAAAAAAAAAAAAAAAA]
[+] EMBL CA764784 [CGAGACAAGGGGGGAGTTCGTGTTGATCTCTCGCTGCCGCTCCTCATCCTGATCTAATCGTCGCGGTGGTTCTCTGCATCATCTGCCGCTAGCTGAATGGTGACACCTCATTGTTCTTCCTGCCCATATCTTGATGTGAACATATCATGTATCAATTGATTAGTATCTCATGACTCACAACAGAGCAGTCTCGTACTCTCTTTGGGGGGCCAGTGTGGTTGTGATTAGTTTGGCCCTAGCTTTGATGAGCAAAAAGACATTGATTCTGAATGTCATACATACATATGTGCTGTGAGAATCCCCTCTCTGCTTTGGTTCGTTTTTGATATTATTATTAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11080#2 ------------------------------------------------------------
consensus_11080#3 ------------------------------------------------------------
consensus_11080#0 --------------------------------------------AGTTGGGTCCTTTCCA 16
consensus_11080#4 ------------------------------------------------------------
consensus_11080#1 GCCTCCTCCTTCGCCTTCGCGGCTTCGCCTCTCCCCACACATGCATCGCCATCGCCGTCA 60
consensus_11080#2 ------------------------------------------------------------
consensus_11080#3 ------------------------------------------------------------
consensus_11080#0 AANGTCCTTCCTTNTTNTGNGAAAATTNTTTGAATTGNACCACCACNAGCGCCCCGGAAC 76
consensus_11080#4 ------------------------------------------------------------
consensus_11080#1 TCGTCAGGACTAAGCTCTGCTCTGCATCTGCACCACCACCCAGCTGCAGCCCGAACAAGA 120
consensus_11080#2 -------------------------------------CGATTCGCTGCA-GGGAGAGCTG 22
consensus_11080#3 ---------------------------------------------TGCAAGGGAGAGCTG 15
consensus_11080#0 GNGAGAGGGCATTTATTTANTTATTTCCCCNAATCAATGGTTCGCGNCAGGGGAGAGG-G 135
consensus_11080#4 -----------------------------------------------------CGAGACA 7
consensus_11080#1 AGACGAGCATCTCATCTCATCTCATCTGCCGATCGATCGATTCGCTGCA-GGGAGAGCTG 179
***
consensus_11080#2 AACAATGG-AGTTCGTGTTGATCATCTCGCTGCCGCTCCTCA-TCCGTGATCATAATCGT 80
consensus_11080#3 AACAATGGGAGTTCGTGTTGATCATCTCGCTGCCGCTCCTCA-TCC-TGAWCATAATCGT 73
consensus_11080#0 AACAAGGG--ATTCGNGTGAATAATTTNGCNCCNGTTCCTTAATCCGGAATNATATTNNT 193
consensus_11080#4 AGGGGGGA--GTTCGTGTTGATC-TCTCGCTGCCGCTCCTCA-TCC-TGATC-TAATCGT 61
consensus_11080#1 AACAATGG-AGTTCGTGTTGATCATCTCGCTGCCGCTCCTCA-TCC-TGATCATAATCGT 236
* * **** ** ** * * ** * * **** * *** * ** * *
consensus_11080#2 CGCCGGTGGTTCNTCTGCATCATTCTGCCGCATAGCTGATATGGTGACACCTACATTGTT 140
consensus_11080#3 CGC-GGTGGKTCT-CTGCATCAT-CTGCCGC-TAGCTGA-ATGGTGACACCT-CATTGTT 127
consensus_11080#0 CGC-GGNGGTTTT-CGGCATCAT-CTNCCGC-AAGCGGA-ATGNGAACACNT-CATTGTT 247
consensus_11080#4 CGC-GGTGGTTCT-CTGCATCAT-CTGCCGC-TAGCTGA-ATGGTGACACCT-CATTGTT 115
consensus_11080#1 CGC-GGTGGTTCT-CTGCATCAT-CTGCCGC-TAGCTGA-ATGGTGACACCT-CATTGTT 290
*** ** ** * * ******* ** **** *** ** *** **** * *******
consensus_11080#2 CNTTCCTGCACCATATCTTTGATNGTGAACATAATCATGTATCAATTGATNTAGTATCTT 200
consensus_11080#3 CTT-CCTGC-CCATATCTTGA--TGTGAACATA-TCATGTATCAATTGATT-AGTATCT- 180
consensus_11080#0 CTT-CCTGC-CCATATCTTGA--TGTGAACATA-TCATGTATCAATTGATT-AGTATCT- 300
consensus_11080#4 CTT-CCTGC-CCATATCTTGA--TGTGAACATA-TCATGTATCAATTGATT-AGTATCT- 168
consensus_11080#1 CTT-CCTGC-CCATATCTTGA--TGTGAACATA-TCATGTATCAATTGATT-AGTATCT- 343
* * ***** ********* ********* **************** *******
consensus_11080#2 CATGACTCACACACAGAGCAGTNCTCGTACTCTTCTTTGGGGGGCCACGTGTGGTNTGTG 260
consensus_11080#3 CATGACTCACA-ACAGAGCAGTC-TCGTACTCTCTTTGGGGGGGCCA-GTGTGGTT-GTG 236
consensus_11080#0 CATGACTCACA-ACAGAGCAGTC-TCGTACTCT-CTTTGGGGGGCCA-GTGTGGTT-GTG 355
consensus_11080#4 CATGACTCACA-ACAGAGCAGTC-TCGTACTCT-CTTTGGGGGGCCA-GTGTGGTT-GTG 223
consensus_11080#1 CATGACTCACA-ACAGAGCAGTC-TCGTACTCT-CTTTGGGGGGCCA-GTGTGGTT-GTG 398
*********** ********** ********* ** ********* ******* ***
consensus_11080#2 ATTNAGTTTGGCCCTAGCNTTTGATGAGCACAAAAGACATTGATTCNTGAATGTCGATAC 320
consensus_11080#3 ATTA-GTTTSGCCCTAGCTTTK-ATGAGCA-AAAAGACATTGATTCT-GAATGTC-ATAC 291
consensus_11080#0 ATTA-GTTTGGCCCTAGCTTTG-ATGAGCA-AAAAGACATTGATTCT-GAATGTC-ATAC 410
consensus_11080#4 ATTA-GTTTGGCCCTAGCTTTG-ATGAGCA-AAAAGACATTGATTCT-GAATGTC-ATAC 278
consensus_11080#1 ATTA-GTTTGGCCCTAGCTTTG-ATGAGCA-AAAAGACATTGATTCT-GAATGTC-ATAC 453
*** **** ******** ** ******* *************** ******* ****
consensus_11080#2 ATACATATGTGCGTGTGAGAATCCCCTCTTCTGCTTTGGTTCGTTTNTTGATATTATTCA 380
consensus_11080#3 ATACATATGTGC-TGTGAGAMTCCCCTCT-CTGCTTTGGTTCGTTTTT-GATATTATWCA 348
consensus_11080#0 ATACATATGTGC-TGTGAGAATCCCCTCT-CTGCTTTGGTTCGTTTTT-GATATTATTCA 467
consensus_11080#4 ATACATATGTGC-TGTGAGAATCCCCTCT-CTGCTTTGGTTCGTTTTT-GATATTATTAT 335
consensus_11080#1 ATACATATGTGC-TGTGAGAAAAAAAAAAAAA---------------------------- 484
************ *******
consensus_11080#2 TACCGGGAGATCGGACACGCTGAAAGCATGATATTCTCATTCTCTTTGTCATTCTTCTGA 440
consensus_11080#3 TAC-GGGVGATCGGACA-GCTGAAAGSATGATATTCTCAAAAAAAAA------------- 393
consensus_11080#0 TAC-GGGAGATCGGACA-GCTGAAAGCATGATATTCTCATTCTCTTTGTCATTCTTCTGA 525
consensus_11080#4 TAAAAAAAAAAAAAAAAAA----------------------------------------- 354
consensus_11080#1 ------------------------------------------------------------
consensus_11080#2 AGATC--- 445
consensus_11080#3 --------
consensus_11080#0 AAAAAAAA 533
consensus_11080#4 --------
consensus_11080#1 --------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||