cluster # 11231

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Oryza sativa
cluster # 11231 cluster # 11231 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11231#0 length = 446 sequences # 3

consensus_11231#1 length = 375 sequences # 5

consensusID : consensus_11231#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 446
fasta sequence

                              [AGGCCGAGGAATAACAGCAACTTCAACAACAACCGGAATTGGTCAAGATGAGGCACCAATTCCATCATCCAGCACCAAGGGATCATAGACTCCCATCTCCCAATTCCATCCAAATTTTTCTTCTTTTTTCGGCTAAAGTTAGTCCAGCCAAGTACATAAACAGCAATAAGGCTTTCCTTCAAAACTTGCTTCCAGTGCCACACACACACACCACAAACACTTCTTGAGAGCTGTGTTGCTGGTTTGCACTCTCTTTTAACCTTTTGATCACGATGGCTGGTTTTTTTTTCCTAGTGGTTTGTCAAAAAAACTTGTAAAGATAGTGCTACTGCCAATCCGAGATGAGTTTCTGCAATACCGATCCTGATCTTGAGCCCCTAAATTTGCTGTTTGTGTTGGTGTTTCCTCGGTTGAAATGCAAATTGCTTTCTACCCTAACAAAAAAA]

[+] EMBL AU092606             [AGGCCGAGGAATAACAGCAACTTCAACAACAACCGGAATTGGTCAAGATGAGGCACCAATTCCATCATCCAGCACCAAGGGATCATAGACTCCCATCTCCCAATTCCATCCAAATTTTTCTTCTTTTTTCGGCTAAAGTTAGTCCAGCCAAGTACATAAACAGCAATAAGGCTTTCCTTCAAAACTTGCTTCCAGTGCCACACACACACACCACAAACACTTCTTGAGAGCTGTGTTGCTGGTTTGCACTCTCTTTTAACCTTTTGATCACGATGGCTGGTTTTTTTTTCCTAGTGGTTTGTCAAAAAAACTTGTAAAGATAGTGCTACTGCCAATCCGAGATGAGTTTCTGCAATACCGATCCTGATCTTGAGCCCCTAAATTTGCTGTTTGTGTTGGTGTTTCCTCGGTTGAAATGCAAATTGCTTTCTACCCTAACAAAAAAA]
[+] EMBL AU068822             [AGGCCGAGGAATAACNGCAACTTCAACAACAACCGGAATTGGTCAAGATGAGGCACCAATNCCATCATCCAGCNCCAAGGGATCATAGACTCCNATCTCCCAATTCCATCCAAATTTTTCTTCTTTTTTCGGCTAAAGTTAGTCCAGCCAAGTACATAAACAGCAATAAGGCTTTCCTTCAAAACTTGCTTCCAGTGCCACACACACACACCACAAACACTTCTTGAGAGCTGTGTTGCTGGTTTGCACTCTCTTTTAACCTTTTGATCACGATGGCTGGTTTTTTTTTCCTAGTGGTTTGTCAAAAANACTTGTAAAGATAGTGCTACTGCCAATCCGAGATGAGTTTCTGCAATACCGATCCaaaaaaaa                                                                          ]
[-] EMBL CB627444             [ GGCCGAGGAATAACAGCAACTTCAACAACAACCGGAATTGGTCAAGATGAGGCACCAATTCCATCATCCAGCACCAAGGGATCATAGACTCCCTCCTCCCAATTCCATCCAAATTTTTCCTCTTTTTCCGGCTAAAGTTAGTCCAGCCAAGTACATAAACAGCAATAAGGCTTTCCTTCAAAACTTGCTTCCAGTGC  CACACACACACCACAAACACTTATTGAGAGCTGTGTTGCTGGTTTGCACTCTCTTTTAACCTTTTGATCATGATGGCTGG TTTTTTTTCCTAGTGGTTTGTCAAAAAAACTTGTAAAGATAGTGCTACTGCCAATCCGAGATGAGTTTCTGCAATACCGATCCTGATCTTGAGCCCC                                                                    ]




>consensus_11231#0
AGGCCGAGGAATAACAGCAACTTCAACAACAACCGGAATTGGTCAAGATGAGGCACCAAT
TCCATCATCCAGCACCAAGGGATCATAGACTCCCATCTCCCAATTCCATCCAAATTTTTC
TTCTTTTTTCGGCTAAAGTTAGTCCAGCCAAGTACATAAACAGCAATAAGGCTTTCCTTC
AAAACTTGCTTCCAGTGCCACACACACACACCACAAACACTTCTTGAGAGCTGTGTTGCT
GGTTTGCACTCTCTTTTAACCTTTTGATCACGATGGCTGGTTTTTTTTTCCTAGTGGTTT
GTCAAAAAAACTTGTAAAGATAGTGCTACTGCCAATCCGAGATGAGTTTCTGCAATACCG
ATCCTGATCTTGAGCCCCTAAATTTGCTGTTTGTGTTGGTGTTTCCTCGGTTGAAATGCA
AATTGCTTTCTACCCTAACAAAAAAA

consensusID : consensus_11231#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 375
fasta sequence

                              [AGGCCGAGGAATAACAGCAACTTCAACAACAACCGGAATTGGTCAAGATGAGGCACCAATTCCATCATCCAGCACCAAGGGATCATAGACTCCCATCTCCCAATTCCATCCAAATTTTTCTTCTTTTTTCGGCTAAAGTTAGTCCAGCCAAGTACATAAACAGCAATAAGGCTTTCCTTCAAAACTTGCTTCCAGTGCCACACACACACACCACAAACA-C-TT-CTT-GAGAGCTGTGTTGCTGGTTTGCACTCTCTTTTAACCTTTTGATCACGATGGCTGG-TTTTTTTTTCCTAGTGGTTTGTCAAAAAAACTT-GTAAAGATA-GTGCTACT-GCCAATCCGAGAT-GAGTTTCTGCAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU063213             [AGGCCGAGGAATAACAGCAACTTCAACAACAACCGGAATTGGTCAAGATGAGGCACCAATTCCATCATCCAGCACCAAGGGATCATAGACTCCCATCTCCCAATTCCATCCAAATTTTTNTTCTTTTTTCGGCTAAAGTTAGTCCAGCCAAGTACATAAACAGCAATAAGGCTTTCCTTCAAAACTTGCTTCCAGTGCCACACACACACACCACAAACA CTTT CTTGGAGAGCTGTGTTGCTGGTTTGCACTCTCTTTTAACCTTTTGATCACGATGGCTGGTTTTTTTTTTCCTAGTGGGTTGTCAAAAAAACTT GTAAAGATAGGTGCTACTGGCCAATCCGNGATGGNGTTTCTGGAAAAAAA               ]
[-] EMBL CF325795             [ GGCCGAGGAATAACAGCAACTTCAACAACAACCGGAATTGGTCAAGATGAGGCACCAATTCCATCATCCAGCACCAAGGGATCATAGACTCCCATCTCCCAATTCCATCCAAATTTTTCTTCTTTTTTCGGCTAAAGTTAGTCCAGCCAAGTACATAAACAGCAATAAGGCTTTCCTTCAAAACTTGCTTCCAGTGCCACACACACACACCACAAACA C TT CTT GAGAGCTGTGTTGCTGGTTTGCACTCTCTTTTAACCTTTTGATCACGATGGCTGG TTTTTTTTTCCTAGTGGTTTGTCAAAAAAACTT GTAAAGATA GTGCTACT GCCAATCCGAGAT GAGTTTCTGCAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF325063             [ GGCCGAGGAATAACAGCAACTTCAACAACAACCGGAATTGGTCAAGATGAGGCACCAATTCCATCATCCAGCACCAAGGGATCATAGACTCCCATCTCCCAATTCCATCCAAATTTTTCTTCTTTTTTCGGCTAAAGTTAGTCCAGCCAAGTACATAAACAGCAATAAGGCTTTCCTTCAAAACTTGCTTCCAGTGCCACACACACACACCACAAACA C TT CTT GAGAGCTGTGTTGCTGGTTTGCACTCTCTTTTAACCTTTTGATCACGATGGCTGG TTTTTTTTTCCTAGTGGTTTGTCAAAAAAACTT GTAAAGATA GTGCTACT GCCAATCCGAGAT GAGTTTCTGCAAAAAAAAAAAAAAAAAAAAA ]
[+] EMBL BI796631             [                                                                                                                                                                                                        CACACACACACCACATACACC TTGATT GAGAGCTGTGTTGCTGGTTTGCACTCTCTTTTAACCTTTTGATCATGATGGCTGG  TTTTTTTTCCTAGTGGTTTGTC AAAAAACTTGGTAAAGATA GTGCTACT GCC ATCCGAGAT GAGTTTCT CAAAAAAAAAA            ]
[-] EMBL CF325038             [                                                                                                                                                                                                                                        AGCTGTGTTGCTGGTTTGCACTCTCTTTTAACCTTTTGATCACGATGGCTGG TTTTTTTTTCCTAGTGGTTTGTCAAAAAAACTT GTAAAGATA GTGCTACT GCCAATCCGAGAT GAGTTTCTGCAAAAAAAAAAAAAAAAAAAAA ]




>consensus_11231#1
AGGCCGAGGAATAACAGCAACTTCAACAACAACCGGAATTGGTCAAGATGAGGCACCAAT
TCCATCATCCAGCACCAAGGGATCATAGACTCCCATCTCCCAATTCCATCCAAATTTTTC
TTCTTTTTTCGGCTAAAGTTAGTCCAGCCAAGTACATAAACAGCAATAAGGCTTTCCTTC
AAAACTTGCTTCCAGTGCCACACACACACACCACAAACACTTCTTGAGAGCTGTGTTGCT
GGTTTGCACTCTCTTTTAACCTTTTGATCACGATGGCTGGTTTTTTTTTCCTAGTGGTTT
GTCAAAAAAACTTGTAAAGATAGTGCTACTGCCAATCCGAGATGAGTTTCTGCAAAAAAA
AAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11231#0      AGGCCGAGGAATAACAGCAACTTCAACAACAACCGGAATTGGTCAAGATGAGGCACCAAT 60
consensus_11231#1      AGGCCGAGGAATAACAGCAACTTCAACAACAACCGGAATTGGTCAAGATGAGGCACCAAT 60
                       ************************************************************

consensus_11231#0      TCCATCATCCAGCACCAAGGGATCATAGACTCCCATCTCCCAATTCCATCCAAATTTTTC 120
consensus_11231#1      TCCATCATCCAGCACCAAGGGATCATAGACTCCCATCTCCCAATTCCATCCAAATTTTTC 120
                       ************************************************************

consensus_11231#0      TTCTTTTTTCGGCTAAAGTTAGTCCAGCCAAGTACATAAACAGCAATAAGGCTTTCCTTC 180
consensus_11231#1      TTCTTTTTTCGGCTAAAGTTAGTCCAGCCAAGTACATAAACAGCAATAAGGCTTTCCTTC 180
                       ************************************************************

consensus_11231#0      AAAACTTGCTTCCAGTGCCACACACACACACCACAAACACTTCTTGAGAGCTGTGTTGCT 240
consensus_11231#1      AAAACTTGCTTCCAGTGCCACACACACACACCACAAACACTTCTTGAGAGCTGTGTTGCT 240
                       ************************************************************

consensus_11231#0      GGTTTGCACTCTCTTTTAACCTTTTGATCACGATGGCTGGTTTTTTTTTCCTAGTGGTTT 300
consensus_11231#1      GGTTTGCACTCTCTTTTAACCTTTTGATCACGATGGCTGGTTTTTTTTTCCTAGTGGTTT 300
                       ************************************************************

consensus_11231#0      GTCAAAAAAACTTGTAAAGATAGTGCTACTGCCAATCCGAGATGAGTTTCTGCAATACCG 360
consensus_11231#1      GTCAAAAAAACTTGTAAAGATAGTGCTACTGCCAATCCGAGATGAGTTTCTGCAAAAAAA 360
                       ******************************************************* *   

consensus_11231#0      ATCCTGATCTTGAGCCCCTAAATTTGCTGTTTGTGTTGGTGTTTCCTCGGTTGAAATGCA 420
consensus_11231#1      AAAAAAAAAAAAAAA--------------------------------------------- 375
                       *     *     *                                               

consensus_11231#0      AATTGCTTTCTACCCTAACAAAAAAA 446
consensus_11231#1      --------------------------