Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 11277 cluster # 11277       Sequences # 8       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11277#0 length = 1242 sequences # 8  
consensusID : consensus_11277#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1242
fasta sequence 
                              [CAGCGAAGCCAACGCGTCACCTCCTCTCCCCGAACCCCCAACCCTCCAGAACCTTCCGCCTCCCGCCGGCGCCGGCGCCGCCGACTCGGCCGCGGAAACCCTAGCGTGCGCTCGCGCCCGCCCTCGCTCGCCGGCCACCTCCGGACTCCGCCTCCTCCGCCTGCTCCTCGTCTCCGGCCCCTCCGCCGCCGTCGACCGGTCAGATCTCGACGCCGTCAAGCCGCGATGGAGGACTGGGATTCTGAAGACTTTCAGCCCGCAGTGCCTAGTGCAAAAGCTGAGCCGCTTAAAAGTAAGTGGGCAGATGAAGATGTGGAAGAAGATGATGTAAAAGAATCATGGGAAGAAGAGGAGGAGGAGAAACCTAAACCACCACCTGTAGAAAAGACTGCACCAAAACCTAGTGGGAAAGGTGCTGCGAAGAAAGGAAAACAACAAGCATCAACTAGTTCTGAAGTAGTTCAAGATGAGGCTCTGGATGATCCTGCTCTAGAGAAACTTCGTCAACAAAGGCTTGTGGAAGAAGCTGACTTTAAGTCAACTACGGAACTTTTTGGAAAGAAGGACGGCAGTGAAAAGTCCCTAGATACCTTCATCCCAAAGTCTGAGAGTGACTTTGCGGAATATGCAGAGCTTATTGCAAACAAACTGCGTCCCTATGAGAAAAGCTTCCACTATATGGGTCTACTCAAGAATGTCATGAGACTTTCCATGGCATCATTGAAAGGTGCGGATGCGAAAGATATATCGTCCTCCATTGCAGCAATTGCTAATGAAAAGATCAAGGCT-GAGAAAGAAGCTGCAGCAGGCA-AAAAGAAACAAGGGGC-AAAAAAGAAGCAGCTACACATTGAGAATAAAGACGATGATTTCATCCCTGGAAAGGGTAATTTTGATGATCCGGATGAGTACGATTTCATGTGATCGGCTGTGAGGGAAC-CGTCATCTTCTATGTATACCTTGGCAAGCAGAGATTAGAGTTTGCGGCATAGTTGGTATTTTCATTCAGAGGCACCTGAACACTTGAAACGATTGCATGGGAAC-AATGCCCATTTGTTCGACGTTGATTTTGACTCTCACAGAATAGGGAAGAGCACCTGTGTGCTCGAGCTCGACACATAGGCGTTTTTTCTTATTCTTAATCCACATTGTGTTTTTGGTCTGTTCATGGGTTGGGATCTATATTTTTTTGCCAACTGTAGTATAATGTGTATCTGGTTTATATTGGAGTCCTGCAAAAAAAAA]

[+] EMBL AK106553             [CAGCGAAGCCAACGCGTCACCTCCTCTCCCCGAACCCCCAACCCTCCAGAACCTTCCGCCTCCCGCCGGCGCCGGCGCCGCCGACTCGGCCGCGGAAACCCTAGCGTGCGCTCGCGCCCGCCCTCGCTCGCCGGCCACCTCCGGACTCCGCCTCCTCCGCCTGCTCCTCGTCTCCGGCCCCTCCGCCGCCGTCGACCGGTCAGATCTCGACGCCGTCAAGCCGCGATGGAGGACTGGGATTCTGAAGACTTTCAGCCCGCAGTGCCTAGTGCAAAAGCTGAGCCGCTTAAAAGTAAGTGGGCAGATGAAGATGTGGAAGAAGATGATGTAAAAGAATCATGGGAAGAAGAGGAGGAGGAGAAACCTAAACCACCACCTGTAGAAAAGACTGCACCAAAACCTAGTGGGAAAGGTGCTGCGAAGAAAGGAAAACAACAAGCATCAACTAGTTCTGAAGTAGTTCAAGATGAGGCTCTGGATGATCCTGCTCTAGAGAAACTTCGTCAACAAAGGCTTGTGGAAGAAGCTGACTTTAAGTCAACTACGGAACTTTTTGGAAAGAAGGACGGCAGTGAAAAGTCCCTAGATACCTTCATCCCAAAGTCTGAGAGTGACTTTGCGGAATATGCAGAGCTTATTGCAAACAAACTGCGTCCCTATGAGAAAAGCTTCCACTATATGGGTCTACTCAAGAATGTCATGAGACTTTCCATGGCATCATTGAAAGGTGCGGATGCGAAAGATATATCGTCCTCCATTGCAGCAATTGCTAATGAAAAGATCAAGGCT GAGAAAGAAGCTGCAGCAGGCA AAAAGAAACAAGGGGC AAAAAAGAAGCAGCTACACATTGAGAATAAAGACGATGATTTCATCCCTGGAAAGGGTAATTTTGATGATCCGGATGAGTACGATTTCATGTGATCGGCTGTGAGGGAAC CGTCATCTTCTATGTATACCTTGGCAAGCAGAGATTAGAGTTTGCGGCATAGTTGGTATTTTCATTCAGAGGCACCTGAACACTTGAAACGATTGCATGGGAAC AATGCCCATTTGTTCGACGTTGATTTTGACTCTCACAGAATAGGGAAGAGCACCTGTGTGCTCGAGCTCGACACATAGGCGTTTTTTCTTATTCTTAATCCACATTGTGTTTTTGGTCTGTTCATGGGTTGGGATCTATATTTTTTTGCCAACTGTAGTATAATGTGTATCTGGTTTATATTGGAGTCCTGCAAgtga   ]
[+] EMBL AU070160             [            CGCGTCACCTCCTCTCCCCGAACCCCCAACCCTCCAGAACCTTCCGCCTCCCGCCGGCGCCGGCGCCGCCGACTCGGCCGCGGAAACCCTAGCGTGCGCTCGCGCCCGCCCTCGCTCGCCGGCCACCTCCGGACTCCGCCTCCTCCGCCTGCTCCTCGTCTCCGGCCCCTCCGCCGCCGTCGACCGGTCAGATCTCGACGCCGTCAAGCCGCGATGGAGGACTGGGATTCTGAAGACTTTCAGCCCGCAGTGCCTAGTGCAAAAGCTGAGCCGCTTAAAAGTAAGTGGGCAGATGAAGATGTGGAAGAAGATGATGTAAAAGAATCATGGGAAGAAGAGGAGGAGGAGAAACCTAAACCACCACCTGTAGAAAAGACTGCACCAAAACCTAGTGGGAAAGGTGCTGCGAAGAAAGGAAAACAACAAGCATCAACTAGTTCTGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AK073059             [                          TCCCCGAACCCCCAACCCTCCAGAACCTTCCGCCTCCCGCCGGCGCCGGCGCCGCCGACTCGGCCGCGGAAACCCTAGCGTGCGCTCGCGCCCGCCCTCGCTCGCCGGCCACCTCCGGACTCCGCCTCCTCCGCCTGCTCCTCGTCTCCGGCCCCTCCGCCGCCGTCGACCGGTCAGATCTCGACGCCGTCAAGCCGCGATGGAGGACTGGGATTCTGAAGACTTTCAGCCCGCAGTGCCTAGTGCAAAAGCTGAGCCGCTTAAAAGTAAGTGGGCAGATGAAGATGTGGAAGAAGATGATGTAAAAGAATCATGGGAAGAAGAGGAGGAGGAGAAACCTAAACCACCACCTGTAGAAAAGACTGCACCAAAACCTAGTGGGAAAGGTGCTGCGAAGAAAGGAAAACAACAAGCATCAACTAGTTCTGAAGTAGTTCAAGATGAGGCTCTGGATGATCCTGCTCTAGAGAAACTTCGTCAACAAAGGCTTGTGGAAGAAGCTGACTTTAAGTCAACTACGGAACTTTTTGGAAAGAAGGACGGCAGTGAAAAGTCCCTAGATACCTTCATCCCAAAGTCTGAGAGTGACTTTGCGGAATATGCAGAGCTTATTGCAAACAAACTGCGTCCCTATGAGAAAAGCTTCCACTATATGGGTCTACTCAAGAATGTCATGAGACTTTCCATGGCATCATTGAAAGGTGCGGATGCGAAAGATATATCGTCCTCCATTGCAGCAATTGCTAATGAAAAGATCAAGGCT GAGAAAGAAGCTGCAGCAGGCA AAAAGAAACAAGGGGC AAAAAAGAAGCAGCTACACATTGAGAATAAAGACGATGATTTCATCCCTGGAAAGGGTAATTTTGATGATCCGGATGAGTACGATTTCATGTGATCGGCTGTGAGGGAAC CGTCATCTTCTATGTATACCTTGGCAAGCAGAGATTAGAGTTTGCGGCATAGTTGGTATTTTCATTCAGAGGCACCTGAACACTTGAAACGATTGCATGGGAAC AATGCCCATTTGTTCGACGTTGATTTTGACTCTCACAGAATAGGGAAGAGCACCTGTGTGCTCGAGCTCGACACATAGGCGTTTTTTCTTATTCTTAATCCACATTGTGTTTTTGGTCTGTTCATGGGTTGGGATCTATATTTTTTTGCCAACTGTAGTATAATGTGTATCTGGTTTATATT                   ]
[+] EMBL BI802045             [                                                                                                                                                                                                                                                                                          CCGCTTAAAAGTAAGTGGCCAGATGAAGATGTGGAAGAAGATGATGTAAAAGAATCATGGGAAGAAGAGGAGGAGGAGAAACCTAAACCACCACCTGTAGAAAAGACTGCACCAAAACCTAGTGGGAAAGGTGCTGCGAAGAAAGGAAAACAACAAGCATCAACTAGTTCTGAAGTAGTTCAAGATGAGGCTCTGGATGATCCTGCTCTAGAGAAACTTCGTCAAC AAGGCTTGTGGAAGAAGCTGACTTTAAGTCAACTACGGAACTTTTTGGAAAGAAGGACGGCAGTGAAAAGTCCCTAGATACCTTCATCCCAAAGTCTGAGAGTGACTTTGCGGAATATGCAGAGCTTATTGCAAACCAACTGCGTCCCTATGAGAAAAGCTTCCACTATATGGGTCTACTCAAGAATGTCATGAGACTTTCCATGGCATCATTGAAAGGTGCGGATGCGAAAGATATATCGTCCTCC TTGCAGC ATTGCTAATGAAAAGATCAAGGCT GAGAAAGAAGCTGCAGCAGGCA AAA                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CF323426             [                                                                                                                                                                                                                                                                                                                                                                   gGGAGAAACCTAAACCACCACCTGTAGAAAAGACTGCACCAAAACCTAGTGGGAAAGGTGCTGCGAAGAAAGGAAAACAACAAGCATCAACTAGTTCTGAAGTAGTTCAAGATGAGGCTCTGGATGATCCTGCTCTAGAGAAACTTCGTCAACAAAGGCTTGTGGAAGAAGCTGACTTTAAGTCAACTACGGAACTTTTTGGAAAGAAGGACGGCAGTGAAAAGTCCCTAGATACCTTCATCCCAAAGTCTGAGAGTGACTTTGCGGAATATGCAGAGCTTATTGCAAACAAACTGCGTCCCTATGAGAAAAGCTTCCACTATATGGGTCTACTCAAGAATGTCATGAGACTTTCCATGGCATCATTGAAAGGTGCGGATGCGAAAGATATATCGTCCTCCATTGCAGCAATTGCTAATGAAAAGATCAAGGCT GAGAAAGAAGCTGCAGCAGGCA AAAAGAAACAAGGGGCAAAAAAAGAAGCAGCTACACATTGAGAATAAAGACGATGATTTCATCCCTGG                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BI809254             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AAAGATCAAGCCTGGAGAAAGAA CTGCAGCAGGCACAAAAGAAACAAGGGGC AATAAAGAAGCAGCTACACATTGAGAATAAAGACGATGATTTCATCCCTGGAAAGGGTAATTTTGATGATCCGGATGAGTACGATTTCATGTGATC GCTGTGAGGGAACACGTCATCTTCTAGGTATACCTTGGCAAGCAGAGATTAGAGTTTGCGGCATAGTTGGTATTTTCATTCAGAGGCACCTGAACACTTGAAACGATTGCATGGGAACAAATGCCCATTTGTTCGACGTTGATTTTGACTCTCACAGAATAGGGAAGAGCACCTGTGTGCTCGAGCTCGACACATAGGCGTTTTTTCTTATTCTTAATCCCCCTTGTGTTTTTGGTCTGTTCATGGGTTGGGATCTATATTTTTTTGCCAACTGTAGTATAATGTGTATCTGGTTTAaaaaaaaa               ]
[+] EMBL AT003479             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CAAGGGGC NAAAAAGAAGCAGCTACNCATTGAGAATAAAGACGATGATTTCATCCCTGGAAAGGGTAATTTTGATGATCCGGATGAGTACGATTTCATGTNATCGGCTGTNAGGNAAC CGTCATNTTNTATGTATACCTTGGCAAGCANAGATTAGAGTTTGCGGCATAGTTGGTATTTTCATTCAGAGGCACCTGAACACTTGAAACGATTGCATGGGAAC AATGCCCATTTGTTCGACGTTGATTTTGACTCTCNCAGAATAGGGAAGAGCACCTGTGTGNTCGAGCTCGACACATAGGCGNTTTTTNTTATTNTTAATCCACATTGTGTTTTTGGTCTGTTCATGGGTTGGGATCTATATTTTTTTGCCAACTGTAGTATAATGTGTATCTGGTTTATATTGGAGTCCTGCAAAAAAAAA]
[+] EMBL AT003643             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CAAGGGGC AAAAAAGAAGCAGCTACACATTGAGAATAAAGACGATGATTTCATCCCTGGAAAGGGTAATTTTGATGATCCGGATGAGTACGATTTCATGTGATCGGCTGTGAGGGAAC CGTCATCTTCTATGTATACCTTGGCAAGCAGAGATTAGAGTTTGCGGCATAGTTGGTATTTTCATTCAGAGGCACCTGAACACTTGAAACGATTGCATGGGAAC AATGCCCATTTGTTCGACGTTGATTTTGACTCTCACAGAATAGGGAAGAGCACCTGTGTGCTCGAGCTCGACACATAGGCGTTTTTTCTTATTCTTAATCCACATTGTGTTTTTGGTCTGTTCATGGGTTGGGATCTATATTTTTTTGCCAACTGTAGTATAATGTGTATCTGGTTTATATTGGAGTCCTGCAAAAAAAAA]




>consensus_11277#0
CAGCGAAGCCAACGCGTCACCTCCTCTCCCCGAACCCCCAACCCTCCAGAACCTTCCGCC
TCCCGCCGGCGCCGGCGCCGCCGACTCGGCCGCGGAAACCCTAGCGTGCGCTCGCGCCCG
CCCTCGCTCGCCGGCCACCTCCGGACTCCGCCTCCTCCGCCTGCTCCTCGTCTCCGGCCC
CTCCGCCGCCGTCGACCGGTCAGATCTCGACGCCGTCAAGCCGCGATGGAGGACTGGGAT
TCTGAAGACTTTCAGCCCGCAGTGCCTAGTGCAAAAGCTGAGCCGCTTAAAAGTAAGTGG
GCAGATGAAGATGTGGAAGAAGATGATGTAAAAGAATCATGGGAAGAAGAGGAGGAGGAG
AAACCTAAACCACCACCTGTAGAAAAGACTGCACCAAAACCTAGTGGGAAAGGTGCTGCG
AAGAAAGGAAAACAACAAGCATCAACTAGTTCTGAAGTAGTTCAAGATGAGGCTCTGGAT
GATCCTGCTCTAGAGAAACTTCGTCAACAAAGGCTTGTGGAAGAAGCTGACTTTAAGTCA
ACTACGGAACTTTTTGGAAAGAAGGACGGCAGTGAAAAGTCCCTAGATACCTTCATCCCA
AAGTCTGAGAGTGACTTTGCGGAATATGCAGAGCTTATTGCAAACAAACTGCGTCCCTAT
GAGAAAAGCTTCCACTATATGGGTCTACTCAAGAATGTCATGAGACTTTCCATGGCATCA
TTGAAAGGTGCGGATGCGAAAGATATATCGTCCTCCATTGCAGCAATTGCTAATGAAAAG
ATCAAGGCTGAGAAAGAAGCTGCAGCAGGCAAAAAGAAACAAGGGGCAAAAAAGAAGCAG
CTACACATTGAGAATAAAGACGATGATTTCATCCCTGGAAAGGGTAATTTTGATGATCCG
GATGAGTACGATTTCATGTGATCGGCTGTGAGGGAACCGTCATCTTCTATGTATACCTTG
GCAAGCAGAGATTAGAGTTTGCGGCATAGTTGGTATTTTCATTCAGAGGCACCTGAACAC
TTGAAACGATTGCATGGGAACAATGCCCATTTGTTCGACGTTGATTTTGACTCTCACAGA
ATAGGGAAGAGCACCTGTGTGCTCGAGCTCGACACATAGGCGTTTTTTCTTATTCTTAAT
CCACATTGTGTTTTTGGTCTGTTCATGGGTTGGGATCTATATTTTTTTGCCAACTGTAGT
ATAATGTGTATCTGGTTTATATTGGAGTCCTGCAAAAAAAAA

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)