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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11291#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 790 fasta sequence
[TAGACATTTTTTTTTTCCTCATGCTCATTACTTCTTCAAAGTTCTCAAAATTGCTATA-TAGGATGGGCCTAAGGCCGAGTTTAGTTAC-AAATTTTTTCTTCAAACTTCCAACTTTTTCATCACATTAAAACTTTCCTACATACACAAACTTCCAACTTTTCCGTCA-CATTGTT--CTAATTTCAACCAAAC-TTTCAATTT-TA-GTGTGAAC-TAAACACACCC-TAATTCA-TGCCCAA-TTGTTATGAAAATTCTAC-AA-GTTTTAC-AGAGATGGGAAAGTAGTAGGA-CCA-TGG-ATTTTTT-TTGTCAAC-AACTCCTTCACTTT-TGTGCTGGAGACGGTC-ATC-A-TGG-CACAAG-TGGACTCCACAC-GGTTTCTATGAG-AA-AAGGAAAACCTTTACA-AGATGAATCATATACACATGGA-CAATAATCTGACCCAGAATGACATAAAATTTGATGGGTCACTGATCATTTGATCAATCAGGTGTTCTTCTCAAGAACAGAGAGAGCTGGTGCCAGGTAATTGTTCGCCTTGTCAGGCAAATGAGCCACAAGTTCATACAACTCATCCCCTT--GCTTTGAGACATGTTCATAGCACACATCAAAGCTTTTGTTTCTTGCTGTTGAATCGTGCAATGCCTTGACACAGATATCTGCTACGTCGGCACAGCTGATACCCTGAGAGATTCTGTTCCCTTGATCAAAGATCAGAGCACGCTGACCGCCAGGTTCTTCCTGCAGAGGACCTGGGCATACAATTGTATATCCGAGGCCGGATCTCCTCAGTGCATCCTCTCCAGCCTTC]
[+] EMBL CB621047 [TAGACAAATGCACTTTCCTCATGCTCATTACTTCTTCAAAGTTCTCAAAATTGCTATA TAGGATGGGCCTAAGGCCGAGTTTAGTTAC AAATTTTTTCTTCAAACTTCCAACTTTTTCATCACATTAAAACTTTCCTACATACACAAACTTCCAACTTTTCCGTCA CATTGTT CTAATTTCAACCAAAC TTTCAATTT TA GTGTGAAC TAAACACACCC TAATTCA TGCCCAA TTGTTATGAAAATTCTAC AA GTTTTAC AGAGATGGGAAAGTAGTAGGA CCA TGG ATTTTTT TTGTCAAC AACTCCTTCACTTT TGTGCTGGAGACGGTC ATC A TGG CACAAG TGGACTCCACAC GGTTTCTATGAG AA AAGGAAAACCTTTACA AGATGAATCATATACACATGGA CAATAATCTGACCCAGAATGACATAAAATTTGATGGGTCACTGATCATTTGATCAATCAGGTGTTCTTCTCAAGAACAGAGAGAGCTGGTGCCAGGTAATTGTTCGCCTTGTCAGGCAAATGAGCCACAAGTTCATACAACTCATCCCCTT GCTTTGAGACATGTTCATAGCACACATCAAAGCTTTTGTTTCTTGCTGTTGAATCGTGCAATGCCTTGACACAGATATCTGCTACGTCGGCACAGCTGATACCCTGAGAGATTCTGTTCCCTTGATCAAAGATCAGAGCACGCTGACCGCCAGGTTCTTCCTGCAGAGGACCT ]
[-] EMBL BI808102 [ TTTTTTTTTTCCTCATGCTCATTACTTCTTCAAAGTTCTCAAAATGGCTATA TAGGATGGGCCTAAGGCCGAGTTTAGTTAC AAATTTTTTCTTCAAACTTCCAACTTTTTCATCACATTAAAACTTTCCTACATACACAAACTTCCAACTTTTCCGTCA CATTGTT CTAATTTCAACCAAAC TTTCAATTT TA GTGTGAAC TAAACACACCC TAATTCA TGCCCAACTGGTTATGAAAATTCTAC AAGGTTTTAC AGAGATGGGAAAGTAGTAGGACCCA TGG ATTTTTT TGGTCAAC AACTCCTTCAC TT TGTGCTGGAGACGGTC ATCTA TGG CACAAGTTGGACTCCACAC GGTTTCTATGAG AA AAGGAGAACCTTTACA AGATGAATCATATACACATGGAGCAATAATCTGACCCAGAATGAC TAAAA TTGATGGGTCCCTGATCATTTGATC ATCAGG GTTCTTCTCAAGAACAG ]
[-] EMBL BM420330 [ TTTTTTTTTTCCTCA GGTCATTACTTCTTCAAAGTTCTCAAAA TGGTATA TAGGATGGGCCTAAGGCCGAGTTTAGTTACAAAATTTTTTCTTCAAACTTCCAACTTTTTCATCACATTAAAACTTTCCTACATACACAAACTTCCAACTTTTCCGTCAGCATGGGTNGCTAATTTCAACCAAACGTTTCAATTTATAGGTGTGAAC TAAACACACCC TAATTCAGTGCCCAA TGGTTATGAAAATTCTAC AA GTTTTAC AGAGATGGGAAAGTAGTAGGA CCAGTGG ATTTTTTCTGGTCAAC AACTCCTTCACTTTGGGTGCTGGAGACGGTC ATC AGTGGCCACAAG TGGACTCCACACGGGTTTCTATGAGCAACAAGGAAAACCTTTACA AGAgtg ]
[-] EMBL BQ907228 [ CAAAGTTCTCAAAA TGCTATAGTAGGATGGGCCTAAGGCCGAGTTTAGTTAC AAATTTTTTCTTCAAACTTCCAACTTTTTCATCACATTAAAACTTTCCTACATACACAAACTTCCAACTTTTCCGTCA CA TGTN CTAATTTCAACCAAAC TTTCAATTT TA GTGTGAACGTAAACACACCCATAATTCA TGCCCAA NTGTTATGAAAATTCTACTAA GTTTTACTAGAGATGGGAAAGTAGTAGGA CCA TGGCATTGGNT TTGTCAACGAACTCCTTCAC TT TGTGCTGGAGACGGTCAATCGA TGG CACAAG TGGACTCCACAC GGTTTCTATGAG AA AAGGAAAACCTTTACANAGATGAATCATATACACATGGA CAATANTCTGAC ]
[+] EMBL CB619068 [ TCTCAAAATTGCTATA TAGGATGGGCCTAAGGCCGAGTTTAGTTAC AAATTTTTTCTTCAAACTTCCAACTTTTTCATCACATTAAAACTTTCCTACATACACAAACTTCCAACTTTTCCGTCA CATTGTT CTAATTTCAACCAAAC TTTCAATTT TA GTGTGAAC TAAACACACCC TAATTCA TGCCCAA TTGTTATGAAAATTCTAC AA GTTTTAC AGAGATGGGAAAGTAGTAGGA CCA TGG ATTTTTT TTGTCAAC AACTCCTTCACTTT TGTGCTGGAGACGGTC ATC A TGG CACAAG TGGACTCCACAC GGTTTCTATGAG AA AAGGAAAACCTTTACA AGATGAATCATATACACATGGA CAATAATCTGACCCAGAATGACATAAAATTTGATGGGTCACTGATCATTTGATCAATCAGGTGTTCTTCTCAAGAACAGAGAGAGCTGGTGCCAGGTAATTGTTCGCCTTGTCAGGCAAATGAGCCACAAGTTCATACAACTCATCCCCTT GCTTTGAGACATGTTCATAGCACACATCAAAGCTTTTGTTTCTTGCTGTTGAATCGTGCAATGCCTTGACACAGATATCTGCTACGTCGGCACAGCTGATACCCTGAGAGATTCTGTTCCCTTGATCAAAGATCAGAGCACGCTGACCGCCAGGTTCTTCCTGCAGAGGACCTGGGCATACAATTGTATATCCGAGGCCGGATCTCCTCAGTGCATCCTCTCCAGCCTTC]
[-] EMBL BI811364 [ TTTTTTCTTCAAACTTCCAACTTTTTCATCACATTAAAACTTTCCTACATACACAAACTTCCAACTTTTCCGTCA CATTGTT CTAATTTCAACCAAAC TTTCAATTT TA GTGTGAAC TAAACACACCC TAATTCA TGCCCAA TGTTATGAAAATTCTAC AA GTTTTAC AGAGATGGGAAAGTAGTAGGA CCA TGG ATTTTTT TTGTCAAC AACTCCTTCAC TT TGTGCTGGAGACGGTC ATC A TGG CACAAG TGGACTCCACAC GGTTTCTATGAG AA AAGGAAAACCTTTACA AGATGAATCATATACACATGGA CAATAATCTGACCCAGAATGACATAAAATTTGATGGGTCACTGATCATTTGATCAATCAGGTGTTCTTCTCAAGAACAGAGAGAGCTGGTGCCAGGTAATTGTTCGCCTTGTCAGGCAAATGAGCCACAAGTTCATACAA TCATCCCCTTTGGGTTTGgagga ]
consensusID : consensus_11291#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence
[TTTTTTTTTTTTTTTTCTTCAAACTTCCAACTTTTTCATCACATTAAAACTTTCCTACATACACAAACTTCCAACTTTTCCGTCACATTGTTCTAATTTCAACCAAACTTTCAATTTTAGGGGGAACTAAACACACCCTAATTCATGCCCAATTGTTATGAAAATTCTACAAGTTTTACAGAGATGGGAAAGTAGTAGGACCATGGATTTTTTTTGTCAACAACTCCTTCACTTTTGTGCTGGAAACGGTCATCATGGCACAAGTGGACTCCACACGGTTTCTATGAGAAAAGGAAAACCTTTACAAGATGAATCATATACACATGGACAATAATCTGACCCAAAATGACATAAAATTTGATGGGTCACTGATCATTTGATCAATCAGGTGTTCTTCTCAAAAACAGAGAGAGCTGGTGCCAGGTAATTGTTCGCCTTGTCAGGCAAATGAGCCACAAGTTCATACAACTCATCCCCTTGCTTTGAGACATGTTCATAGCACACATCAAAGCTTTTGTTTCTTGCTGTTGAATCGTGCAATGCCTTGACACAAATATCTGCTACGTCGGCACAGCTAATACCCTGAGAGATTCTGTTCCCTTGATCAAAGATCAGAGCACGCTGACCGCCAGGTTCTTCCTGCAGAGGACCTGGGCATACAATTGTATATCCCCCCTTGGCTCGCCCTCTGG]
[+] EMBL CA762038 [TTTTTTTTTTTTTTTTCTTCAAACTTCCAACTTTTTCATCACATTAAAACTTTCCTACATACACAAACTTCCAACTTTTCCGTCACATTGTTCTAATTTCAACCAAACTTTCAATTTTAGGGGGAACTAAACACACCCTAATTCATGCCCAATTGTTATGAAAATTCTACAAGTTTTACAGAGATGGGAAAGTAGTAGGACCATGGATTTTTTTTGTCAACAACTCCTTCACTTTTGTGCTGGAAACGGTCATCATGGCACAAGTGGACTCCACACGGTTTCTATGAGAAAAGGAAAACCTTTACAAGATGAATCATATACACATGGACAATAATCTGACCCAAAATGACATAAAATTTGATGGGTCACTGATCATTTGATCAATCAGGTGTTCTTCTCAAAAACAGAGAGAGCTGGTGCCAGGTAATTGTTCGCCTTGTCAGGCAAATGAGCCACAAGTTCATACAACTCATCCCCTTGCTTTGAGACATGTTCATAGCACACATCAAAGCTTTTGTTTCTTGCTGTTGAATCGTGCAATGCCTTGACACAAATATCTGCTACGTCGGCACAGCTAATACCCTGAGAGATTCTGTTCCCTTGATCAAAGATCAGAGCACGCTGACCGCCAGGTTCTTCCTGCAGAGGACCTGGGCATACAATTGTATATCCCCCCTTGGCTCGCCCTCTGG]
consensusID : consensus_11291#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence
[TTTTTTTTTTTTCTTCAAAGTTCTCAAAATTGCTATATAGGATGGGCCTAAGGCCGAGTTTAGTTACAAATTTNTTCTTCAAACTTCCAACTTTTTCATCACATTAAAACTTTCCTACATACACAAACTTCCAACTTTTCCGTCACATTGTTCTAATTTCAACCAAACTTTCAATTTTAGTGTGAACTAAACACACCCTAATTCATGCCCAATTGTTATGAAAATTCTACAAGTTTTACAGAGATGGGAAAGTAGTAGGACCATGGATTTTTTTTGTCAACAACTCCTTCACTTTTGTGCTGGAGACGGTCATCATGGCACAAGTGGACTCCACACGGTTTCTATGAGAAAAGGAAAACCTTTACAAGATGAATCATATACACATGGACAATAATCTGACCCAGAATGACATAAAATTTGATGGGTCACTGATCATTTGATCAATCAGGTGTTCTTCTCAAGAACAGAGAGAGCTGGTGCCAGGTAATTGTTCGCCTTGTCAGGCAAATGAGCCACAAGTTCATACAACTCATCCCCTTGCTTTGAGACATGTTCATAGCACACATCAAAGCTTTTGTTTCTTGCTGTTGAATCGTGCAATGCCTTGACACAGATATCTGCTACGTCGGCACAGCTGATACCCTGAGAGATTCTGTTCCCTTGATCAAAGATCAGGAGCACGCTGACCGCCA]
[-] EMBL AU032797 [TTTTTTTTTTTTCTTCAAAGTTCTCAAAATTGCTATATAGGATGGGCCTAAGGCCGAGTTTAGTTACAAATTTNTTCTTCAAACTTCCAACTTTTTCATCACATTAAAACTTTCCTACATACACAAACTTCCAACTTTTCCGTCACATTGTTCTAATTTCAACCAAACTTTCAATTTTAGTGTGAACTAAACACACCCTAATTCATGCCCAATTGTTATGAAAATTCTACAAGTTTTACAGAGATGGGAAAGTAGTAGGACCATGGATTTTTTTTGTCAACAACTCCTTCACTTTTGTGCTGGAGACGGTCATCATGGCACAAGTGGACTCCACACGGTTTCTATGAGAAAAGGAAAACCTTTACAAGATGAATCATATACACATGGACAATAATCTGACCCAGAATGACATAAAATTTGATGGGTCACTGATCATTTGATCAATCAGGTGTTCTTCTCAAGAACAGAGAGAGCTGGTGCCAGGTAATTGTTCGCCTTGTCAGGCAAATGAGCCACAAGTTCATACAACTCATCCCCTTGCTTTGAGACATGTTCATAGCACACATCAAAGCTTTTGTTTCTTGCTGTTGAATCGTGCAATGCCTTGACACAGATATCTGCTACGTCGGCACAGCTGATACCCTGAGAGATTCTGTTCCCTTGATCAAAGATCAGGAGCACGCTGACCGCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11291#0 TAGACATTTTTTTTTTCCTCATGCTCATTACTTCTTCAAAGTTCTCAAAATTGCTATATA 60
consensus_11291#2 ---------------------TTTTTTTTTTTTCTTCAAAGTTCTCAAAATTGCTATATA 39
consensus_11291#1 ------------------------------------------------------------
consensus_11291#0 GGATGGGCCTAAGGCCGAGTTTAGTTACAAATTTTTTCTTCAAACTTCCAACTTTTTCAT 120
consensus_11291#2 GGATGGGCCTAAGGCCGAGTTTAGTTACAAATTTNTTCTTCAAACTTCCAACTTTTTCAT 99
consensus_11291#1 ---------------------TTTTTTTTTTTTTTTTCTTCAAACTTCCAACTTTTTCAT 39
* ** *** *************************
consensus_11291#0 CACATTAAAACTTTCCTACATACACAAACTTCCAACTTTTCCGTCACATTGTTCTAATTT 180
consensus_11291#2 CACATTAAAACTTTCCTACATACACAAACTTCCAACTTTTCCGTCACATTGTTCTAATTT 159
consensus_11291#1 CACATTAAAACTTTCCTACATACACAAACTTCCAACTTTTCCGTCACATTGTTCTAATTT 99
************************************************************
consensus_11291#0 CAACCAAACTTTCAATTTTAGTGTGAACTAAACACACCCTAATTCATGCCCAATTGTTAT 240
consensus_11291#2 CAACCAAACTTTCAATTTTAGTGTGAACTAAACACACCCTAATTCATGCCCAATTGTTAT 219
consensus_11291#1 CAACCAAACTTTCAATTTTAGGGGGAACTAAACACACCCTAATTCATGCCCAATTGTTAT 159
********************* * ************************************
consensus_11291#0 GAAAATTCTACAAGTTTTACAGAGATGGGAAAGTAGTAGGACCATGGATTTTTTTTGTCA 300
consensus_11291#2 GAAAATTCTACAAGTTTTACAGAGATGGGAAAGTAGTAGGACCATGGATTTTTTTTGTCA 279
consensus_11291#1 GAAAATTCTACAAGTTTTACAGAGATGGGAAAGTAGTAGGACCATGGATTTTTTTTGTCA 219
************************************************************
consensus_11291#0 ACAACTCCTTCACTTTTGTGCTGGAGACGGTCATCATGGCACAAGTGGACTCCACACGGT 360
consensus_11291#2 ACAACTCCTTCACTTTTGTGCTGGAGACGGTCATCATGGCACAAGTGGACTCCACACGGT 339
consensus_11291#1 ACAACTCCTTCACTTTTGTGCTGGAAACGGTCATCATGGCACAAGTGGACTCCACACGGT 279
************************* **********************************
consensus_11291#0 TTCTATGAGAAAAGGAAAACCTTTACAAGATGAATCATATACACATGGACAATAATCTGA 420
consensus_11291#2 TTCTATGAGAAAAGGAAAACCTTTACAAGATGAATCATATACACATGGACAATAATCTGA 399
consensus_11291#1 TTCTATGAGAAAAGGAAAACCTTTACAAGATGAATCATATACACATGGACAATAATCTGA 339
************************************************************
consensus_11291#0 CCCAGAATGACATAAAATTTGATGGGTCACTGATCATTTGATCAATCAGGTGTTCTTCTC 480
consensus_11291#2 CCCAGAATGACATAAAATTTGATGGGTCACTGATCATTTGATCAATCAGGTGTTCTTCTC 459
consensus_11291#1 CCCAAAATGACATAAAATTTGATGGGTCACTGATCATTTGATCAATCAGGTGTTCTTCTC 399
**** *******************************************************
consensus_11291#0 AAGAACAGAGAGAGCTGGTGCCAGGTAATTGTTCGCCTTGTCAGGCAAATGAGCCACAAG 540
consensus_11291#2 AAGAACAGAGAGAGCTGGTGCCAGGTAATTGTTCGCCTTGTCAGGCAAATGAGCCACAAG 519
consensus_11291#1 AAAAACAGAGAGAGCTGGTGCCAGGTAATTGTTCGCCTTGTCAGGCAAATGAGCCACAAG 459
** *********************************************************
consensus_11291#0 TTCATACAACTCATCCCCTTGCTTTGAGACATGTTCATAGCACACATCAAAGCTTTTGTT 600
consensus_11291#2 TTCATACAACTCATCCCCTTGCTTTGAGACATGTTCATAGCACACATCAAAGCTTTTGTT 579
consensus_11291#1 TTCATACAACTCATCCCCTTGCTTTGAGACATGTTCATAGCACACATCAAAGCTTTTGTT 519
************************************************************
consensus_11291#0 TCTTGCTGTTGAATCGTGCAATGCCTTGACACAGATATCTGCTACGTCGGCACAGCTGAT 660
consensus_11291#2 TCTTGCTGTTGAATCGTGCAATGCCTTGACACAGATATCTGCTACGTCGGCACAGCTGAT 639
consensus_11291#1 TCTTGCTGTTGAATCGTGCAATGCCTTGACACAAATATCTGCTACGTCGGCACAGCTAAT 579
********************************* *********************** **
consensus_11291#0 ACCCTGAGAGATTCTGTTCCCTTGATCAAAGATCAG-AGCACGCTGACCGCCAGGTTCTT 719
consensus_11291#2 ACCCTGAGAGATTCTGTTCCCTTGATCAAAGATCAGGAGCACGCTGACCGCCA------- 692
consensus_11291#1 ACCCTGAGAGATTCTGTTCCCTTGATCAAAGATCAG-AGCACGCTGACCGCCAGGTTCTT 638
************************************ ****************
consensus_11291#0 CCTGCAGAGGACCTGGGCATACAATTGTATATCCGAGGCCGGATCTCCTCAGTGCATCCT 779
consensus_11291#2 ------------------------------------------------------------
consensus_11291#1 CCTGCAGAGGACCTGGGCATACAATTGTATATCCCCCCTTGGCTCGCCCTCTGG------ 692
consensus_11291#0 CTCCAGCCTTC 790
consensus_11291#2 -----------
consensus_11291#1 -----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||