cluster # 11325

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Oryza sativa
cluster # 11325 cluster # 11325 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11325#0 length = 847 sequences # 6

consensus_11325#1 length = 609 sequences # 1
consensus_11325#2 length = 140 sequences # 1

consensusID : consensus_11325#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 847
fasta sequence

                              [TAGGACAGAGGCTACAAATTAAAATGACCACACAACTTGTTAAGATCGGGACATGGGGTGGAAATGGAGGAGGTCGTGTAGACCTATCTGTACTCCCAAGGAGCTTGAAAAGCGTGACAATCCGTAGTGGTGCAGCCATTGATGCTATTGCCTTTACATACATTGGCACAGATGGGAAGGAACATCTTGCAGGTCCTTGG---GGTGGT---GGTGGAAATCCAACTACGATTACACTTGGATCTCAGGAATTCGTGAAGGGAATCTCCGGAACATTTACCAACGTCGTGACAAACCTTCAAATTGTCACCAATGTCACCACTTATAATTTTGGACAAGGTGGTGGAACTGCTTTTAGCCTCCCGCTGCAGAGCGGCAGTGTGGTTGG-TTTCTTTGGTCGCTCGGGCGCACTTGTGGACTCTATCGGAGTTTATGTCCACATATGATATATGTCATCTACATATGAATATATCCAATTGGATATATGTTGGATCAGTGCTCATGATAAATTCACCCCTAAAGTCTTGTTTGTATAATCCCTCACACAAGAGGTTGAAGGAGATTTGTAGGAGATTAATTCTACACCTCCCCTCCAATCTCTCTCTTGGGGATGAATCGCACAAGACCTAAGTCCTAAGGGTGACATTTCTTTCAATCACTCTATATACCTATACATATATAGTGTGCATGTGTATGTGGCCTAGGCCCAAAA-GTTTACCTCACTAGTGCCCCGTTATGTTTCTCTCAGTGCTGTATACATTTATGTGTTGTGCTACATTCGCTACATATGTACGTGGNTTATNTNTGATTATATATAAATNAAAGACTACTGGGATGNATTGGGCTTAAATGC]

[+] EMBL CA755334             [TAGGACAGAGGCTACAAATTAAAATGACCACACAACTTGTTAAGATCGGGACATGGGGTGGAAATGGAGGAGGTCGTGTAGACCTATCTGTACTCCCAAGGAGCTTGAAAAGCGTGACAATCCGTAGTGGTGCAGCCATTGATGCTATTGCCTTTACATACATTGGCACAGATGGGAAGGAACATCTTGCAGGTCCTTGG   GGTGGTGGCGGTGGAAATCCAACTACGATTACACTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB096301             [                                                                                                                                                                                              AGGTCCTTGG   GGTGGT   GGTGGAAATCCAACTACGATTACACTTGGATCTCAGGAATTCGTGAAGGGAATCTCCGGAACATTTACCAACGTCGTGACAAACCTTCAAATTGTCACCAATGTCACCACTTATAATTTTGGACAAGGTGGTGGAACTGCTTTTAGCCTCCCGCTGCAGAGCGGCAGTGTGGTTGG TTTCTTTGGTCGCTCGGGCGCACTTGTGGACTCTATCGGAGTTTATGTCCACATATGATATATGTCATCTACATATGAATATATCCAATTGGATATATGTTGGATCAGTGCTCATGATAAATTCACCCCTAAAGTCTTGTTTGTATAATCCCTCACACAAGAGGTTGAAGGAGATTTGTAGGAGATTAATTCTACACCTCCCCTCCAATCTCTCTCTTGGGGATGAATCGCACAAGACCTAAGTCCTAAGGGTGACATTTCTTTCAATCACTCTATATACCTATACATATATAGTGTGCATGTGTATGTGGCCTAGGCTCAAAA GNTTACCTCACTAGTGCCCCGGTATGNTTCTCTCAGNGCTGNATACATTTATGTGNTGGGCTACATTCGCTACATATGTACGTGGNTTATNTNTGATTATATATAAATNAAAGACTACTGGGATGNATTGGGCTTAAATGC]
[+] EMBL CB096521             [                                                                                                                                                                                              AGGTCCTTGGGGTGGTGGT   GGTGGAAATCCAACTACGATTACACTTGGATCTCAGGAATTCGNGAAGGGAATCTNCGGAACATTTACCAACGTCGNGACAAACCTTCAAATTGTCACCAATGTCACCACTTATAATTTTGGACAAGGNGGAGGAACTGCTTTTAGCCTCCCGCTGCAGAGCGNNAGTGTGGTTGG TTTCTTTGGTCGNTCGGGCGCACTTGTGGACTCTATCGGAGTTTATGNCCACATATGATATATGNCATCTACATATGAATATATCCAATTGGATATATGTTGGATCAGTGCTCATGATAAATTCACCCCTAAAGTCTTGTTTGTATAATCCCTCACACAANAGGTTGAAGGAGATTTGTAGGAGATTAATTCTACACCTCCNCTNCAATCTCTCTCTTGGGGATGAATCGCACAAGACCTAAGTCCTAAGGGTGACATTTCTTTCAATCACTCTATATACCTATACATATATAGTGGGCATGTGTATGTGGCCTAAACCCAAAAGGTTTACCTCACTAGAGCCCCc                                                                                                                        ]
[+] EMBL CF281230             [                                                                                                                                                                                                                                                         AATTCGTGAAGGGAATCTCCGGAACATTTACCAACGTCGTGACAAACCTTCAAATTGTCACCAATGTCACCACTTATAATTTTGGA AAGGTGGTGGAACTGCTTTTAGCCTCCCGCTGCAAAGCGGCAGTGTGGTTGGTTTTCTTTGGTCGCTCGGGCGCACTTGTGGACTCTATCGGAGTTTATGTCCACATATGATATATGTCATCTACATATGAATATATCCAAT                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CB967209             [                                                                                                                                                                                                                                                                         CTCCGGAACATTTACCAACGTCGTGACAAACCTTCAAATTGTCACCAATGTCACCACTTATAATTTTGGACAAGGTGGTGGAACTGCTTTTAGCCTCCCGCTGCAGAGCGGCAGTGTGGTTGG TTTCTTTGGTCGCTCGGGCACACTTGTGGACTCTATCGGAGTTTATGTCCACATATGATATATGTCATCTACATATGAATATATCCAATTGGATATATGTTGGATCAGTGCTCATGATAAATTCACCCCTAAAGTCTTGTTTGTATAATCCCTCACACAAGAGGTTGAAGGAGATTTGTAGGAGATTAATTCTACACCTCCCCTCCGATCTCTCTCTTGGGGATGAATCGCACAAGACCTAAGTCCTAAGGGTGACATTTCTTTCAATCACTCTATATACCTATACATATATAGTGTGCATGTGTATGTGGCCTAGGCCCAAAA GTTTACCTCACTAGTGCCCCGTTATGTTTCTCTCAGTGCTGTATACATTTATGTGTTGTGCTACATTCGCTACATATGTATGTGGTTTA ATATGATTATATATAAATAAAAGACTACTGTGATGt               ]
[-] EMBL CF281231             [                                                                                                                                                                                                                                                                                                                                                                                                                                               TTATGTCCACATATGATATATGTCATCTACATATGAATATATCCAATTGGATATATGTTGGATCAGTGCTCATGATAAATTCACCCGTAAAGTCTTGTTTGTATAATCCCTCACACAAGAGGTTGAAGGAGATTTGTAGGAGATTAATTTTACACCTCCCCTCCAATCTCTCTCTTGGGGATGCATCGCACAAGACCTAAGTCGTAAGGGTGACATTTCTTTAAATAACTGTATATACCTATACATATATAGTGTGCATGTGTATAAAAAAAAGGCCCAAAA GTTTACCTCACTAGTGCCCCGTTATGTTTCTCTCAGTACTGTATACATTTATGTGTTGTGTTACATTCGCTACATATGT                                                              ]




>consensus_11325#0
TAGGACAGAGGCTACAAATTAAAATGACCACACAACTTGTTAAGATCGGGACATGGGGTG
GAAATGGAGGAGGTCGTGTAGACCTATCTGTACTCCCAAGGAGCTTGAAAAGCGTGACAA
TCCGTAGTGGTGCAGCCATTGATGCTATTGCCTTTACATACATTGGCACAGATGGGAAGG
AACATCTTGCAGGTCCTTGGGGTGGTGGTGGAAATCCAACTACGATTACACTTGGATCTC
AGGAATTCGTGAAGGGAATCTCCGGAACATTTACCAACGTCGTGACAAACCTTCAAATTG
TCACCAATGTCACCACTTATAATTTTGGACAAGGTGGTGGAACTGCTTTTAGCCTCCCGC
TGCAGAGCGGCAGTGTGGTTGGTTTCTTTGGTCGCTCGGGCGCACTTGTGGACTCTATCG
GAGTTTATGTCCACATATGATATATGTCATCTACATATGAATATATCCAATTGGATATAT
GTTGGATCAGTGCTCATGATAAATTCACCCCTAAAGTCTTGTTTGTATAATCCCTCACAC
AAGAGGTTGAAGGAGATTTGTAGGAGATTAATTCTACACCTCCCCTCCAATCTCTCTCTT
GGGGATGAATCGCACAAGACCTAAGTCCTAAGGGTGACATTTCTTTCAATCACTCTATAT
ACCTATACATATATAGTGTGCATGTGTATGTGGCCTAGGCCCAAAAGTTTACCTCACTAG
TGCCCCGTTATGTTTCTCTCAGTGCTGTATACATTTATGTGTTGTGCTACATTCGCTACA
TATGTACGTGGNTTATNTNTGATTATATATAAATNAAAGACTACTGGGATGNATTGGGCT
TAAATGC

consensusID : consensus_11325#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 609
fasta sequence

                              [GGTCCTTGGGGTGGTGGTGGTGGAAATCCAACTACGATTACACTTGGATCTCAGGAATTCGTGAAGGGAATCTCCGGAACATTTACCAACGTCGTGACAAACCTTCAAATTGTCACCAATGTCACCCCTTATAATTTTGGACAAGGTGGTGGAACTGCTTTTAGCCTCCCGCTGCAGAGCGGCAGTGTGGTTGGTTTCTTTGGTCGCTCGGGCGCACTTGTGGACTCTATCGGAGTTTATGTCCACATATGATATATGTCATCTACATATGAATATATCCAATTGGATATATGTTGGATCAGTGCTCATGATAAATTCACCCCTAAAGTCTTGTTTGTATAATCCCTCACCCAAGAGGTTGAAGGAGATTTGTAGGAGATTAATTTTACACCTCCCCTCCAATCTCTCTCTTGGGGATGAATCGCCCAAGACCTAAGTCCTAAGGGTGACATTTCTTTCAATCCCTCTATATACCTATACATATATAGTGTGCATGTGTATGTGGCCTAGGCCCAAAAGTTTACCTCCCTAGTGCCCCGTTATGTTTCTCTCAGTGCTGTATACATTTATGTGTTGTGCTACATTCGCTCCAAAAAAAAAAAAAAAAAA]

[-] EMBL CA760036             [GGTCCTTGGGGTGGTGGTGGTGGAAATCCAACTACGATTACACTTGGATCTCAGGAATTCGTGAAGGGAATCTCCGGAACATTTACCAACGTCGTGACAAACCTTCAAATTGTCACCAATGTCACCCCTTATAATTTTGGACAAGGTGGTGGAACTGCTTTTAGCCTCCCGCTGCAGAGCGGCAGTGTGGTTGGTTTCTTTGGTCGCTCGGGCGCACTTGTGGACTCTATCGGAGTTTATGTCCACATATGATATATGTCATCTACATATGAATATATCCAATTGGATATATGTTGGATCAGTGCTCATGATAAATTCACCCCTAAAGTCTTGTTTGTATAATCCCTCACCCAAGAGGTTGAAGGAGATTTGTAGGAGATTAATTTTACACCTCCCCTCCAATCTCTCTCTTGGGGATGAATCGCCCAAGACCTAAGTCCTAAGGGTGACATTTCTTTCAATCCCTCTATATACCTATACATATATAGTGTGCATGTGTATGTGGCCTAGGCCCAAAAGTTTACCTCCCTAGTGCCCCGTTATGTTTCTCTCAGTGCTGTATACATTTATGTGTTGTGCTACATTCGCTCCAAAAAAAAAAAAAAAAAA]




>consensus_11325#1
GGTCCTTGGGGTGGTGGTGGTGGAAATCCAACTACGATTACACTTGGATCTCAGGAATTC
GTGAAGGGAATCTCCGGAACATTTACCAACGTCGTGACAAACCTTCAAATTGTCACCAAT
GTCACCCCTTATAATTTTGGACAAGGTGGTGGAACTGCTTTTAGCCTCCCGCTGCAGAGC
GGCAGTGTGGTTGGTTTCTTTGGTCGCTCGGGCGCACTTGTGGACTCTATCGGAGTTTAT
GTCCACATATGATATATGTCATCTACATATGAATATATCCAATTGGATATATGTTGGATC
AGTGCTCATGATAAATTCACCCCTAAAGTCTTGTTTGTATAATCCCTCACCCAAGAGGTT
GAAGGAGATTTGTAGGAGATTAATTTTACACCTCCCCTCCAATCTCTCTCTTGGGGATGA
ATCGCCCAAGACCTAAGTCCTAAGGGTGACATTTCTTTCAATCCCTCTATATACCTATAC
ATATATAGTGTGCATGTGTATGTGGCCTAGGCCCAAAAGTTTACCTCCCTAGTGCCCCGT
TATGTTTCTCTCAGTGCTGTATACATTTATGTGTTGTGCTACATTCGCTCCAAAAAAAAA
AAAAAAAAA

consensusID : consensus_11325#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 140
fasta sequence

                              [CATTCGCTACATATGTATGTGGTTTATATATGATTATATATAAATAAAAGACTACTGTGATGTATTGTGCTTAAATGCACGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF307619             [CATTCGCTACATATGTATGTGGTTTATATATGATTATATATAAATAAAAGACTACTGTGATGTATTGTGCTTAAATGCACGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_11325#2
CATTCGCTACATATGTATGTGGTTTATATATGATTATATATAAATAAAAGACTACTGTGA
TGTATTGTGCTTAAATGCACGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11325#0      TAGGACAGAGGCTACAAATTAAAATGACCACACAACTTGTTAAGATCGGGACATGGGGTG 60
consensus_11325#1      ------------------------------------------------------------
consensus_11325#2      ------------------------------------------------------------
                                                                                   

consensus_11325#0      GAAATGGAGGAGGTCGTGTAGACCTATCTGTACTCCCAAGGAGCTTGAAAAGCGTGACAA 120
consensus_11325#1      ------------------------------------------------------------
consensus_11325#2      ------------------------------------------------------------
                                                                                   

consensus_11325#0      TCCGTAGTGGTGCAGCCATTGATGCTATTGCCTTTACATACATTGGCACAGATGGGAAGG 180
consensus_11325#1      ------------------------------------------------------------
consensus_11325#2      ------------------------------------------------------------
                                                                                   

consensus_11325#0      AACATCTTGCAGGTCCTTGGGGTGGTGGTGG---AAATCCAACTACGATTACACTTGGAT 237
consensus_11325#1      -----------GGTCCTTGGGGTGGTGGTGGTGGAAATCCAACTACGATTACACTTGGAT 49
consensus_11325#2      ------------------------------------------------------------
                                                                                   

consensus_11325#0      CTCAGGAATTCGTGAAGGGAATCTCCGGAACATTTACCAACGTCGTGACAAACCTTCAAA 297
consensus_11325#1      CTCAGGAATTCGTGAAGGGAATCTCCGGAACATTTACCAACGTCGTGACAAACCTTCAAA 109
consensus_11325#2      ------------------------------------------------------------
                                                                                   

consensus_11325#0      TTGTCACCAATGTCACCACTTATAATTTTGGACAAGGTGGTGGAACTGCTTTTAGCCTCC 357
consensus_11325#1      TTGTCACCAATGTCACCCCTTATAATTTTGGACAAGGTGGTGGAACTGCTTTTAGCCTCC 169
consensus_11325#2      ------------------------------------------------------------
                                                                                   

consensus_11325#0      CGCTGCAGAGCGGCAGTGTGGTTGGTTTCTTTGGTCGCTCGGGCGCACTTGTGGACTCTA 417
consensus_11325#1      CGCTGCAGAGCGGCAGTGTGGTTGGTTTCTTTGGTCGCTCGGGCGCACTTGTGGACTCTA 229
consensus_11325#2      ------------------------------------------------------------
                                                                                   

consensus_11325#0      TCGGAGTTTATGTCCACATATGATATATGTCATCTACATATGAATATATCCAATTGGATA 477
consensus_11325#1      TCGGAGTTTATGTCCACATATGATATATGTCATCTACATATGAATATATCCAATTGGATA 289
consensus_11325#2      ----------CATTCGCTACATATGTATGTGGTTTATATATGATTATATATAAATAAAAG 50
                                   * * *     ** *****  * ** ****** *****  ** *  *  

consensus_11325#0      TATGTTGGATCAGTGCTCATGATAAATTCACCCCTAAAGTCTTGTTTGTATAATCCCTCA 537
consensus_11325#1      TATGTTGGATCAGTGCTCATGATAAATTCACCCCTAAAGTCTTGTTTGTATAATCCCTCA 349
consensus_11325#2      ACTACTGTGAT-GTATTGTGCTTAAATGCACGAAAAAAAAAAAAAAAAAAAAAAAAAAAA 109
                         *  **     **  *     ***** ***    ***           * **      *

consensus_11325#0      CACAAGAGGTTGAAGGAGATTTGTAGGAGATTAATTCTACACCTCCCCTCCAATCTCTCT 597
consensus_11325#1      CCCAAGAGGTTGAAGGAGATTTGTAGGAGATTAATTTTACACCTCCCCTCCAATCTCTCT 409
consensus_11325#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------------------- 140
                          ** *     **  * *     *  * *                              

consensus_11325#0      CTTGGGGATGAATCGCACAAGACCTAAGTCCTAAGGGTGACATTTCTTTCAATCACTCTA 657
consensus_11325#1      CTTGGGGATGAATCGCCCAAGACCTAAGTCCTAAGGGTGACATTTCTTTCAATCCCTCTA 469
consensus_11325#2      ------------------------------------------------------------
                                                                                   

consensus_11325#0      TATACCTATACATATATAGTGTGCATGTGTATGTGGCCTAGGCCCAAAAGTTTACCTCAC 717
consensus_11325#1      TATACCTATACATATATAGTGTGCATGTGTATGTGGCCTAGGCCCAAAAGTTTACCTCCC 529
consensus_11325#2      ------------------------------------------------------------
                                                                                   

consensus_11325#0      TAGTGCCCCGTTATGTTTCTCTCAGTGCTGTATACATTTATGTGTTGTGCTACATTCGCT 777
consensus_11325#1      TAGTGCCCCGTTATGTTTCTCTCAGTGCTGTATACATTTATGTGTTGTGCTACATTCGCT 589
consensus_11325#2      ------------------------------------------------------------
                                                                                   

consensus_11325#0      ACATATGTACGTGGNTTATNTNTGATTATATATAAATNAAAGACTACTGGGATGNATTGG 837
consensus_11325#1      CCAAAAAAAAAAAAAAAAAA---------------------------------------- 609
consensus_11325#2      ------------------------------------------------------------
                                                                                   

consensus_11325#0      GCTTAAATGC 847
consensus_11325#1      ----------
consensus_11325#2      ----------