|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11662#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 2796 fasta sequence
[AAAAAGAGAGAGTAGTTCTTGCAATCTTGCTTCGCCTGCAAGGAATCCTCTCCGGCTCTCCGCCCTGGAGGAAGTACAGTGATCAAATTAAGCTTTGGGGGTGGAGTAGACTAATCCTGCTGAACAAAATAGCCCAGGAGGAAAAAAACGGTTTATTCTGCTACCATGGAAGTTCTTAATACCAATGATCATGGGACTGCAAGAACACGGGATGGTGAAGAGACAGCATCTGTTCCAGTTGAGAATCCTGATTCATCGCATGAAATGGAGAAGAAGTTAACCCACAATTTGACAGAAAATGGGCAGGCTCCTACAGGTCATACTGTACCTTCATTACCGGATACGGTCTCTAAATTGAAACCAGCTCAGGAATCTGATGATTCTTTGAAAGATAAGACAGACCTTCCTACTTCAACAAGTAAGACCGAAGTGAACAATATATCTGAAAATGGTTCGACCAACCAGAGCACTATGCTATCAGATGAATCGAGAACAAAAGAAGACAAGATGAATCATCAC-GAGAACATTGCTGCCACCACAAACAAAAAGGCAGAAACAGATGCGAGACCTGAAAGTCCATACAGAGGTCTCATTGACACTGCTGCGCCATTTGAGTCAGTTAGAGAGGCTGTCACCAAGTTCGGAGGAATTGTTGATTGGAAAGCATACAGATCTCAGACACTAGAGAGGCGCAGGGTCATGCAGCTTGAACTTGAAAAGGCTCAACAAGAGATTCCACAATTCAAACAAGATTCAGAAGCTTGTGAGATGGCCAAGTTACAAGTGGTTGAGGAGCTAGGGAGAACTAGGAGACTTGTAGAGGAGCTGAAACACAAACTGGAGAGAGCAGAGATTGATGTGGACCAGGCAAAGCAGGATTCCGAACTTGCGCAGCTGCGGGCACAAGAAATGGAGCAGGGGATTGACGATGAAGCTAGCGTAATAGCCCAAACACAATTGGCAGTTGCTAAAGAGAGACATCAGAAGGCTGTTGATGAACTGAAGTTGGTCAAGGAGGAGATGAGATCAACACACGAAAAGCATACCGTTTTAGCTAGCGAAAGGGACATAGCAGCCAAAAGAGCCGAGCAAGCTATTTCTGCTGCAAAGGAGACTGAGAAGAGAGTTGAGGAACTCACTTTAGAACTTATCGCAATCAAAGAGTCTCTCGAGTCAGCCCATGCCGCGCATCATGAAGCAGAAGAACACAAGCTCGGGGCGGCTTTGGCAAAAGAGCAGGATTGCCTGGCTTGGGAGAAGGAACTGCAGCAAGCACAGGAGGAGTTGCAGCAACTCAACATGCAACTTGTATCAAAAACTGATGCAA-AGTCCAAAATTGATGAAAATACGCACATGCTACAAATCCTCAGTAAGGAGCTGGCTGCCTATACAGAAAACAAAATGAGTGAAGAAGCTGGAGTGATCGAGGAGGATGGTTCTGATGAGGCTAAAGAAATTAGCAGGTCAATCAAGCGAGCCCTTGCTTCAACAAGAAAGGAGCTTGAAGGGGTTAGAGGAAATATTGAAAAGGCAAAAGACGAAACCAATTTAATAAGAGCTATTGCAGAATCAATTAAGTCAGAGGTGGATAAAGAGAAAGCTTCACTTGTTACATTGCAGCAGCGAGAAGGTATGGCATCCATAGCCGTCTCTTCTCTGGAAGCTGAGCTCAATAGGACAAAAGAAGAGATAGAAATGGTGTACATCAAGGAAGCGGAAACCCGTGAAAAAATGGCAGAGCTTCCAAAGATGCTGCAGCAAGCAGCTCAGGAAGCAGAAGACGCCAAGGTGGCACCTCATTCTGCACAGGAAGAACTTCGAAAGGCGAAAGAAGAAGCCGAGCAAACCAAGGCCGCTGCCGCGACTGCAGAGATCAGGTTACGCGCCGTTCTGAAAGAAATAGAGGCCTCTAAAGCATCCGAGAAGCTTGCCCTTGTGGCGGCTCAAGCATTGCAAGAGAGCGAGGAGACAAGTAGTGTTGAGGATTCCCCTAGAACCATTACACTTCCTATAAGTGAATATCATTCTCTGAGCAAGAGGGTCTACGAAGCCGAAGAGCTTGCGAATGAGAGGGTGGCCGCGGCATTGGCGCAAATAGAGCTAGCAAAAGAGTCTGAAACAAGGACCCTGGAGAGATTGCAACAAGAAACCAAAGAGATGCACAAGAAGAAGGATGCTCTTCAAATCGCACTGCAGAGGGCTGACAGGGCAAAGGAAGGAAAGCTTGGTGCTGAGCAGGAACTGAGGAAATGGAGAGCAGAGCTTGAGCAGCGTCGGAAAGCCGCAAAACATGTTGCTAATCCTTGGACTGCTCCACCTATAAGATCACCTGAACAGAAGGGCTCTTACAAGGAAGACGATGCAGTTCTTACTGAACCAAATTCACCCATGTCAAATAGTAGCACGGATGACTTTGTTGTGGACCAGAAGTTGAGGAAAAAGAAAACATTCTTCCCACAAATGTCAAGCATTTTGTCTAGAAAGGCACAGACGTAGACCTATAAGATTAGTCCTGTACAGGCATATCTTACTGTACATTGTACACTGCAAAAATGTAAATGGTGTGTTTGAGTACATAAGTTTATTTTCCACAACCCTGTCACTTGGTGTGGATACGTGAGGGCATACTTTTGTATGATAATTTTGGATATTTTTTTATACTATAGTTCCTTCGTTTCCAAAACTCAGAGGCAATATGTATGTCTGTTTCTGATGTTAGTCATGAAAGCAAGAATTTTCTGTAACAAAAATTGTCAATTATGAAAACAGATTGAAGTTTGAATACGTGATTCAAGT]
[+] EMBL AK100564 [AAAAAGAGAGAGTAGTTCTTGCAATCTTGCTTCGCCTGCAAGGAATCCTCTCCGGCTCTCCGCCCTGGAGGAAGTACAGTGATCAAATTAAGCTTTGGGGGTGGAGTAGACTAATCCTGCTGAACAAAATAGCCCAGGAGGAAAAAAACGGTTTATTCTGCTACCATGGAAGTTCTTAATACCAATGATCATGGGACTGCAAGAACACGGGATGGTGAAGAGACAGCATCTGTTCCAGTTGAGAATCCTGATTCATCGCATGAAATGGAGAAGAAGTTAACCCACAATTTGACAGAAAATGGGCAGGCTCCTACAGGTCATACTGTACCTTCATTACCGGATACGGTCTCTAAATTGAAACCAGCTCAGGAATCTGATGATTCTTTGAAAGATAAGACAGACCTTCCTACTTCAACAAGTAAGACCGAAGTGAACAATATATCTGAAAATGGTTCGACCAACCAGAGCACTATGCTATCAGATGAATCGAGAACAAAAGAAGACAAGATGAATCATCAC GAGAACATTGCTGCCACCACAAACAAAAAGGCAGAAACAGATGCGAGACCTGAAAGTCCATACAGAGGTCTCATTGACACTGCTGCGCCATTTGAGTCAGTTAGAGAGGCTGTCACCAAGTTCGGAGGAATTGTTGATTGGAAAGCATACAGATCTCAGACACTAGAGAGGCGCAGGGTCATGCAGCTTGAACTTGAAAAGGCTCAACAAGAGATTCCACAATTCAAACAAGATTCAGAAGCTTGTGAGATGGCCAAGTTACAAGTGGTTGAGGAGCTAGGGAGAACTAGGAGACTTGTAGAGGAGCTGAAACACAAACTGGAGAGAGCAGAGATTGATGTGGACCAGGCAAAGCAGGATTCCGAACTTGCGCAGCTGCGGGCACAAGAAATGGAGCAGGGGATTGACGATGAAGCTAGCGTAATAGCCCAAACACAATTGGCAGTTGCTAAAGAGAGACATCAGAAGGCTGTTGATGAACTGAAGTTGGTCAAGGAGGAGATGAGATCAACACACGAAAAGCATACCGTTTTAGCTAGCGAAAGGGACATAGCAGCCAAAAGAGCCGAGCAAGCTATTTCTGCTGCAAAGGAGACTGAGAAGAGAGTTGAGGAACTCACTTTAGAACTTATCGCAATCAAAGAGTCTCTCGAGTCAGCCCATGCCGCGCATCATGAAGCAGAAGAACACAAGCTCGGGGCGGCTTTGGCAAAAGAGCAGGATTGCCTGGCTTGGGAGAAGGAACTGCAGCAAGCACAGGAGGAGTTGCAGCAACTCAACATGCAACTTGTATCAAAAACTGATGCAA AGTCCAAAATTGATGAAAATACGCACATGCTACAAATCCTCAGTAAGGAGCTGGCTGCCTATACAGAAAACAAAATGAGTGAAGAAGCTGGAGTGATCGAGGAGGATGGTTCTGATGAGGCTAAAGAAATTAGCAGGTCAATCAAGCGAGCCCTTGCTTCAACAAGAAAGGAGCTTGAAGGGGTTAGAGGAAATATTGAAAAGGCAAAAGACGAAACCAATTTAATAAGAGCTATTGCAGAATCAATTAAGTCAGAGGTGGATAAAGAGAAAGCTTCACTTGTTACATTGCAGCAGCGAGAAGGTATGGCATCCATAGCCGTCTCTTCTCTGGAAGCTGAGCTCAATAGGACAAAAGAAGAGATAGAAATGGTGTACATCAAGGAAGCGGAAACCCGTGAAAAAATGGCAGAGCTTCCAAAGATGCTGCAGCAAGCAGCTCAGGAAGCAGAAGACGCCAAGGTGGCACCTCATTCTGCACAGGAAGAACTTCGAAAGGCGAAAGAAGAAGCCGAGCAAACCAAGGCCGCTGCCGCGACTGCAGAGATCAGGTTACGCGCCGTTCTGAAAGAAATAGAGGCCTCTAAAGCATCCGAGAAGCTTGCCCTTGTGGCGGCTCAAGCATTGCAAGAGAGCGAGGAGACAAGTAGTGTTGAGGATTCCCCTAGAACCATTACACTTCCTATAAGTGAATATCATTCTCTGAGCAAGAGGGTCTACGAAGCCGAAGAGCTTGCGAATGAGAGGGTGGCCGCGGCATTGGCGCAAATAGAGCTAGCAAAAGAGTCTGAAACAAGGACCCTGGAGAGATTGCAACAAGAAACCAAAGAGATGCACAAGAAGAAGGATGCTCTTCAAATCGCACTGCAGAGGGCTGACAGGGCAAAGGAAGGAAAGCTTGGTGCTGAGCAGGAACTGAGGAAATGGAGAGCAGAGCTTGAGCAGCGTCGGAAAGCCGCAAAACATGTTGCTAATCCTTGGACTGCTCCACCTATAAGATCACCTGAACAGAAGGGCTCTTACAAGGAAGACGATGCAGTTCTTACTGAACCAAATTCACCCATGTCAAATAGTAGCACGGATGACTTTGTTGTGGACCAGAAGTTGAGGAAAAAGAAAACATTCTTCCCACAAATGTCAAGCATTTTGTCTAGAAAGGCACAGACGTAGACCTATAAGATTAGTCCTGTACAGGCATATCTTACTGTACATTGTACACTGCAAAAATGTAAATGGTGTGTTTGAGTACATAAGTTTATTTTCCACAACCCTGTCACTTGGTGTGGATACGTGAGGGCATACTTTTGTATGATAATTTTGGATATTTTTTTATACTATAGTTCCTTCGTTTCCAAAACTCAGAGGCAATATGTATGTCTGTTTCTGATGTTAGTCATGAAAGCAAGAATTTTCTGTAACAAAAATTGTCAATTATGAAAACAGATTG ]
[+] EMBL OSS1764A [ TGTTCCAGTTGAGAATCCTGATTCATCGCATGAAATGGAGAAGAAGTTAACCCACAATTTGACAGAAAATGGGCAGGCTCCTACAGGTCATACTGTACCTTCATTACCGGATACGGTCTCTAAATTGAAACCAGCTCAGGAATCTGATGATTCTTTGAAAGATAAGACAGACCTTCCTACTTCAACAAGTAAGACCGAAGTGAACAATATATCTGAAAATGGTTCGACCAACCAGAGCACTATGCTATCAGATGAATCGAGACCAAAGGAGGACAAGATGAATCATCACGGGGACCATTGCTGCCACCACAAACAAAAGGGCAGGAACAGATGCGAGNCTT AAGTCCATACAGNGGTCTCATTGAC ]
[+] EMBL CB629426 [ AAACAAGATTCAGAAGCTTGTGAGATGGCCAAGTTACAAGTGGTTGAGGAGCTAGGGAGAACTAGGAGACTTGTAGAGGAGCTGAAACACAAACTGGAGAGAGCAGAGATTGATGTGGACCAGGCAAAGCAGGATTCCGAACTTGCGCAGCTGCGGGCACAAGAAATGGAGCAGGGGATTGACGATGAAGCTAGCGTAATAGCCCAAACACAATTGGCAGTTGCTAAAGAGAGACATCAGAAGGCTGTTGATGAACTGAAGTTGGTCAAGGAGGAGATGAGATCAACACACGAAAAGCATACCGTTTTAGCTAGCGAAAGGGACATAGCAGCCAAAAGAGCCGAGCAAGCTATTTCTGCTGCAAAGGAGACTGAGAAGAGAGTTGAGGAACTCACTTTAGAACTTATCGCAATCAAAGAGTCTCTCGAGTCAGCCCATGCCGCGCATCATGAAGCAGAAGAACACAAGCTCGGGGCGGCTTTGGCAAAAGAGCAGGATTGCCTGGCTTGGGAGAAGGAACTGCAGCAAGCACAGGAGGAGTTGCAGCAACTCAACATGCAACTTGTATCAAAAACTGATGCAA AGTCCAAAATTGATGAAAATACGCACATGCTACAAATCCTCAGTAAGGAGCTGGCTGCCTATACAGAAAACAAAATGAGTGAAGAAGCTGGAGTGATCGAGGAGGATGGTTCTGATGAGGCTAAAGAAATTAGCAGGTCAATCAAGCGAGCCCTTGCTTC ACAAGAAAGGAGCTTGAAGGGGTTAGAGGAAATATTGAA ]
[+] EMBL CB676794 [ ATGCAACAGTCCTTAATTGATGAAAATACGCACATGCTACAAATCCTCAGTAAGGAGCTGGCTGCCTATACAGAAAACAAAATGAGTGAAGAAGCTGGAGTGATCGAGGAGGATGGTTCTGATGAGGCTAAAGAAATTAGCAGGTCAATCAAGCGAGCCCTTGCTTCAACAAGAAAGGAGCTTGAAGGGGTTAGAGGAAATATTGAAAAGGCAAAAGACGAAACCAATTTAATAAGAGCTATTGCAGAATCAATTAAGTCAGAGGTGGATAAAGAGAAAGCTTCACTTGTTACATTGCAGCAGCGAGAAGGTATGGCATCCATAGCCGTCTCTTCTCTGGAAGCTGAGCTCAATAGGACAAAAGAAGAGATAGAAATGGTGTACATCAAGGAAGCGGAAACCCGTGAAAAAATGGCAGAGCTTCCAAAGATGCTGCAGCAAGCAGCTCAGGAAGCAGAAGACGCCAAGGTGGCACCTCATTCTGCACAGGAAGAACTTCGAAAGGCGAAAGAAGAAGCCGAGCAAACCAAGGCCGCTGCCGCGACTGCAGAGATCAGGTTACGCGCCGTTCTGAAAGAAATAGAGGCCTCTAAAGCATCCGAGAAGCTTGCCCTTGTGGCGGCTCAAGCATTGCAAGAGAGCGAGGAGACAAGTAGTGTTGAGGATTCCCCTAGAACCATTACACTTCCTATAAGTGAATATCATTCTCTGAGCAAGAGGGTCTACGAAGCCGAAGAGCTTGCGAATGAGAGGGTGGCC ]
[-] EMBL CB676795 [ AGCAAACCAAGGCCGCTGCCGCGACTGCAGAGATCAGGTTACGCGCCGTTCTGAAAGAAATAGAGGCCTCTAAAGCATCCGAGAAGCTTGCCCTTGTGGCGGCTCAAGCATTGCAAGAGAGCGAGGAGACAAGTAGTGTTGAGGATTCCCCTAGAACCATTACACTTCCTATAAGTGAATATCATTCTCTGAGCAAGAGGGTCTACGAAGCCGAAGAGCTTGCGAATGAGAGGGTGGCCGCGGCATTGGCGCAAATAGAGCTAGCAAAAGAGTCTGAAACAAGGACCCTGGAGAGATTGCAACAAGAAACCAAAGAGATGCACAAGAAGAAGGATGCTCTTCAAATCGCACTGCAGAGGGCTGACAGGGCAAAGGAAGGAAAGCTTGGTGCTGAGCAGGAACTGAGGAAATGGAGAGCAGAGCTTGAGCAGCGTCGGAAAGCCGCAAAACATGTTGCTAATCCTTGGACTGCTCCACCTATAAGATCACCTGAACAGAAGGGCTCTTACAAGGAAGACGATGCAGTTCTTACTGAACCAAATTCACCCATGTCAAATAGTAGCACGGATGACTTTGTTGTGGACCAGAAGTTGAGGAAAAAGAAAACATTCTTCCCACAAATGTCAAGCATTTTGTCTAGAAAGGCACAGACGTAGACCTATAAGATTAGTCCTGTACAGGCATATCTTACTGTACATTGTACACTGCAAAAATGTAAATGGTGTGTTTGAGTACATAAGTTTATTTTCCACAAaaaaagga ]
[-] EMBL CB629427 [ GAGGATTCCCCTAGAACCATTACACTTCCTATAAGTGAATATCATTCTCTGAGCAAGAGGGTCTACGAAGCCGAAGAGCTTGCGAATGAGAGGGTGGCCGCGGCATTGGCGCAAATAGAGCTAGCAAAAGAGTCTGAAACAAGGACCCTGGAGAGATTGCAACAAGAAACCAAAGAGATGCACAAGAAGAAGGATGCTCTTCAAATCGCACTGCAGAGGGCTGACAGGGCAAAGGAAGGAAAGCTTGGTGCTGAGCAGGAACTGAGGAAATGGAGAGCAGAGCTTGAGCAGCGTCGGAAAGCCGCAAAACATGTTGCTAATCCTTGGACTGCTCCACCTATAAGATCACCTGAACAGAAGGGCTCTTACAAGGAAGACGATGCAGTTCTTACTGAACCAAATTCACCCATGTCAAATAGTAGCACGGATGACTTTGTTGTGGACCAGAAGTTGAGGAAAAAGAAAACATTCTTCCCACAAATGTCAAGCATTTTGTCTAGAAAGGCACAGACGTAGACCTATAAGATTAGTCCTGTACAGGCATATCTTACTGTACATTGTACACTGCAAAAATGTAAATGGTGTGTTTGAGTACATAAGTTTATTTTCCACAACCCTGTCACTTGGTGTGGATACGTGAGGGCATACTTTTGTATGATAATTTTGGATATTTTTTTATACTATAGTTCCTTCGTTTCCAAAACTCAGAGGCAATATGTATGTCTGTTTCTGATGTTAGTCATGAAAGCAAGAATTTTCTGTAACAAAAATTGTCAATTATGAGAACAGATTGAAGTTTGAATACGTGATTCAAGT]
[+] EMBL CB096799 [ aAGGGCAAAGGAAGGAAAGCTTGGTGCTGAGCAGGAACTGAGGAAATGGAGAGCAGAGCTTGAGCAGCGTCGGAAAGCCGCAAAACATGTTGCTAATCCTTGGACTGCTCCACCTATAAGATCACCTGAACAGAAGGGCTCTTACAAGGAAGACGATGCAGTTCTTACTGAACCAAATTCACCCATGTCAAATAGTAGCACGGATGACTTTGTTGTGGACCAGAAGTTGAGGAAAAAGAAAACATTCTTCCCACAAATGTCAAGCATTTTGTCTAGAAAGGCACAGACGTAGACCTATAAGATTAGTCCTGTACAGGCATATCTTACTGTACATTGTACACTGCAAAAATGTAAATGGTGTGTTTGAGTACATAAGTTTATTTTCCACAACCCTGTCACTTGGTGTGGATACGTGAGGGCATACTTTTGTATGATAATTTTGGATATTTTTTTATACTATAGTTCCTTCGTTTCCAAAACTCAGAGGCAATATGTATGTCTGTTTCTGATGTTAGTCATGAAAGCAAGAATTTTCTGTAACAAAAATTGTCAATTATGAAAACAGATTGAAGTTT ]
consensusID : consensus_11662#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 578 fasta sequence
[AGAGGACGAGACAAGGGGGGGCTGACAGGGCAAAGGAAGGAAAGCTTGGTGCTGAGCAGGAACTGAGGAAATGGAGAGCAGAGCTTGAGCAGCGTTGGAAAGCCGCAAAACATGTTGCTAATCCTTGGACTGCTCCACCTATAAGATCACCTGAACAGAAGGGCTCTTACAAGGAAGACGATGCAGTTCTTACTGAACCAAATTCACCCATGTCAAATAGTAGCACGGATGACTTTGTTGTGGACCAGAAGTTGAGGAAAAAGAAAACATTCTTCCCACAAATGTCAAGCATTTTGTCTAGAAAGGCACAGACGTAGACCTATAAGATTAGTCCTGTACAGGCATATCTTACTGTACATTGTACACTGCAAAAATGTAAATGGTGTGTTTGAGTACATAAGTTTATTTTCCACAACCCTGTCACTTGGTGTGGATACGTGAGGGCATACTTTTGTATGATAATTTTGGATATTTTTTTATACTATAGTTCCTTCGTTTCCAAAACTCAGAGGCAATATGTATGTCTGTTTCTGATGTTAGTCATGAAAGCAAGAATTTTCTGTAAAAAAAAAAAAAAA]
[-] EMBL CA759145 [AGAGGACGAGACAAGGGGGGGCTGACAGGGCAAAGGAAGGAAAGCTTGGTGCTGAGCAGGAACTGAGGAAATGGAGAGCAGAGCTTGAGCAGCGTTGGAAAGCCGCAAAACATGTTGCTAATCCTTGGACTGCTCCACCTATAAGATCACCTGAACAGAAGGGCTCTTACAAGGAAGACGATGCAGTTCTTACTGAACCAAATTCACCCATGTCAAATAGTAGCACGGATGACTTTGTTGTGGACCAGAAGTTGAGGAAAAAGAAAACATTCTTCCCACAAATGTCAAGCATTTTGTCTAGAAAGGCACAGACGTAGACCTATAAGATTAGTCCTGTACAGGCATATCTTACTGTACATTGTACACTGCAAAAATGTAAATGGTGTGTTTGAGTACATAAGTTTATTTTCCACAACCCTGTCACTTGGTGTGGATACGTGAGGGCATACTTTTGTATGATAATTTTGGATATTTTTTTATACTATAGTTCCTTCGTTTCCAAAACTCAGAGGCAATATGTATGTCTGTTTCTGATGTTAGTCATGAAAGCAAGAATTTTCTGTAAAAAAAAAAAAAAA]
consensusID : consensus_11662#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 326 fasta sequence
[ACCGTTANGGACCCTTATTAAAGGATTAAGTTCCCTGTACCAGGCCAATTATCCTTTACTGNTTACATTTGTTACCACTGCAAAAATGTAAATGGTGTGTTTGAGTACATAAGTTTATTTTCCACAACCCTGTCACTTNGGTGTGGATACGTNGAGGGCATACTTTTGTATGATAATTTTGGATATTTTTTTATACTATAGTTCCTTCGTTTCCAAAACTCAGAGGCAATNATNGTATGTCTGTTTCTGATGTTANGTCATGAAAGCAAGAATTTTCTGTAACAAAAATTGTCAATTATGAAAACAGATTGAAGTTTGAAAAAAAA]
[+] EMBL AU161623 [ACCGTTANGGACCCTTATTAAAGGATTAAGTTCCCTGTACCAGGCCAATTATCCTTTACTGNTTACATTTGTTACCACTGCAAAAATGTAAATGGTGTGTTTGAGTACATAAGTTTATTTTCCACAACCCTGTCACTTNGGTGTGGATACGTNGAGGGCATACTTTTGTATGATAATTTTGGATATTTTTTTATACTATAGTTCCTTCGTTTCCAAAACTCAGAGGCAATNATNGTATGTCTGTTTCTGATGTTANGTCATGAAAGCAAGAATTTTCTGTAACAAAAATTGTCAATTATGAAAACAGATTGAAGTTTGAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11662#0 AAAAAGAGAGAGTAGTTCTTGCAATCTTGCTTCGCCTGCAAGGAATCCTCTCCGGCTCTC 60
consensus_11662#1 ------------------------------------------------------------
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 CGCCCTGGAGGAAGTACAGTGATCAAATTAAGCTTTGGGGGTGGAGTAGACTAATCCTGC 120
consensus_11662#1 ------------------------------------------------------------
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 TGAACAAAATAGCCCAGGAGGAAAAAAACGGTTTATTCTGCTACCATGGAAGTTCTTAAT 180
consensus_11662#1 ------------------------------------------------------------
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 ACCAATGATCATGGGACTGCAAGAACACGGGATGGTGAAGAGACAGCATCTGTTCCAGTT 240
consensus_11662#1 ------------------------------------------------------------
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 GAGAATCCTGATTCATCGCATGAAATGGAGAAGAAGTTAACCCACAATTTGACAGAAAAT 300
consensus_11662#1 ------------------------------------------------------------
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 GGGCAGGCTCCTACAGGTCATACTGTACCTTCATTACCGGATACGGTCTCTAAATTGAAA 360
consensus_11662#1 ------------------------------------------------------------
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 CCAGCTCAGGAATCTGATGATTCTTTGAAAGATAAGACAGACCTTCCTACTTCAACAAGT 420
consensus_11662#1 ------------------------------------------------------------
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 AAGACCGAAGTGAACAATATATCTGAAAATGGTTCGACCAACCAGAGCACTATGCTATCA 480
consensus_11662#1 ------------------------------------------------------------
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 GATGAATCGAGAACAAAAGAAGACAAGATGAATCATCACGAGAACATTGCTGCCACCACA 540
consensus_11662#1 ------------------------------------------------------------
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 AACAAAAAGGCAGAAACAGATGCGAGACCTGAAAGTCCATACAGAGGTCTCATTGACACT 600
consensus_11662#1 ------------------------------------------------------------
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 GCTGCGCCATTTGAGTCAGTTAGAGAGGCTGTCACCAAGTTCGGAGGAATTGTTGATTGG 660
consensus_11662#1 ------------------------------------------------------------
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 AAAGCATACAGATCTCAGACACTAGAGAGGCGCAGGGTCATGCAGCTTGAACTTGAAAAG 720
consensus_11662#1 ------------------------------------------------------------
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 GCTCAACAAGAGATTCCACAATTCAAACAAGATTCAGAAGCTTGTGAGATGGCCAAGTTA 780
consensus_11662#1 ------------------------------------------------------------
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 CAAGTGGTTGAGGAGCTAGGGAGAACTAGGAGACTTGTAGAGGAGCTGAAACACAAACTG 840
consensus_11662#1 ------------------------------------------------------------
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 GAGAGAGCAGAGATTGATGTGGACCAGGCAAAGCAGGATTCCGAACTTGCGCAGCTGCGG 900
consensus_11662#1 ------------------------------------------------------------
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 GCACAAGAAATGGAGCAGGGGATTGACGATGAAGCTAGCGTAATAGCCCAAACACAATTG 960
consensus_11662#1 ------------------------------------------------------------
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 GCAGTTGCTAAAGAGAGACATCAGAAGGCTGTTGATGAACTGAAGTTGGTCAAGGAGGAG 1020
consensus_11662#1 ------------------------------------------------------------
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 ATGAGATCAACACACGAAAAGCATACCGTTTTAGCTAGCGAAAGGGACATAGCAGCCAAA 1080
consensus_11662#1 ------------------------------------------------------------
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 AGAGCCGAGCAAGCTATTTCTGCTGCAAAGGAGACTGAGAAGAGAGTTGAGGAACTCACT 1140
consensus_11662#1 ------------------------------------------------------------
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 TTAGAACTTATCGCAATCAAAGAGTCTCTCGAGTCAGCCCATGCCGCGCATCATGAAGCA 1200
consensus_11662#1 ------------------------------------------------------------
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 GAAGAACACAAGCTCGGGGCGGCTTTGGCAAAAGAGCAGGATTGCCTGGCTTGGGAGAAG 1260
consensus_11662#1 ------------------------------------------------------------
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 GAACTGCAGCAAGCACAGGAGGAGTTGCAGCAACTCAACATGCAACTTGTATCAAAAACT 1320
consensus_11662#1 ------------------------------------------------------------
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 GATGCAAAGTCCAAAATTGATGAAAATACGCACATGCTACAAATCCTCAGTAAGGAGCTG 1380
consensus_11662#1 ------------------------------------------------------------
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 GCTGCCTATACAGAAAACAAAATGAGTGAAGAAGCTGGAGTGATCGAGGAGGATGGTTCT 1440
consensus_11662#1 ------------------------------------------------------------
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 GATGAGGCTAAAGAAATTAGCAGGTCAATCAAGCGAGCCCTTGCTTCAACAAGAAAGGAG 1500
consensus_11662#1 ------------------------------------------------------------
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 CTTGAAGGGGTTAGAGGAAATATTGAAAAGGCAAAAGACGAAACCAATTTAATAAGAGCT 1560
consensus_11662#1 ------------------------------------------------------------
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 ATTGCAGAATCAATTAAGTCAGAGGTGGATAAAGAGAAAGCTTCACTTGTTACATTGCAG 1620
consensus_11662#1 ------------------------------------------------------------
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 CAGCGAGAAGGTATGGCATCCATAGCCGTCTCTTCTCTGGAAGCTGAGCTCAATAGGACA 1680
consensus_11662#1 ------------------------------------------------------------
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 AAAGAAGAGATAGAAATGGTGTACATCAAGGAAGCGGAAACCCGTGAAAAAATGGCAGAG 1740
consensus_11662#1 ------------------------------------------------------------
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 CTTCCAAAGATGCTGCAGCAAGCAGCTCAGGAAGCAGAAGACGCCAAGGTGGCACCTCAT 1800
consensus_11662#1 ------------------------------------------------------------
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 TCTGCACAGGAAGAACTTCGAAAGGCGAAAGAAGAAGCCGAGCAAACCAAGGCCGCTGCC 1860
consensus_11662#1 ------------------------------------------------------------
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 GCGACTGCAGAGATCAGGTTACGCGCCGTTCTGAAAGAAATAGAGGCCTCTAAAGCATCC 1920
consensus_11662#1 ------------------------------------------------------------
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 GAGAAGCTTGCCCTTGTGGCGGCTCAAGCATTGCAAGAGAGCGAGGAGACAAGTAGTGTT 1980
consensus_11662#1 ------------------------------------------------------------
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 GAGGATTCCCCTAGAACCATTACACTTCCTATAAGTGAATATCATTCTCTGAGCAAGAGG 2040
consensus_11662#1 ------------------------------------------------------------
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 GTCTACGAAGCCGAAGAGCTTGCGAATGAGAGGGTGGCCGCGGCATTGGCGCAAATAGAG 2100
consensus_11662#1 ------------------------------------------------------------
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 CTAGCAAAAGAGTCTGAAACAAGGACCCTGGAGAGATTGCAACAAGAAACCAAAGAGATG 2160
consensus_11662#1 ------------------------------------------------------------
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 CACAAGAAGAAGGATGCTCTTCAAATCGCACTGCAGAGGGCTGACAGGGCAAAGGAAGGA 2220
consensus_11662#1 -------------------AGAGGACGAGACAAGGGGGGGCTGACAGGGCAAAGGAAGGA 41
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 AAGCTTGGTGCTGAGCAGGAACTGAGGAAATGGAGAGCAGAGCTTGAGCAGCGTCGGAAA 2280
consensus_11662#1 AAGCTTGGTGCTGAGCAGGAACTGAGGAAATGGAGAGCAGAGCTTGAGCAGCGTTGGAAA 101
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 GCCGCAAAACATGTTGCTAATCCTTGGACTGCTCCACCTATAAGATCACCTGAACAGAAG 2340
consensus_11662#1 GCCGCAAAACATGTTGCTAATCCTTGGACTGCTCCACCTATAAGATCACCTGAACAGAAG 161
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 GGCTCTTACAAGGAAGACGATGCAGTTCTTACTGAACCAAATTCACCCATGTCAAATAGT 2400
consensus_11662#1 GGCTCTTACAAGGAAGACGATGCAGTTCTTACTGAACCAAATTCACCCATGTCAAATAGT 221
consensus_11662#2 ------------------------------------------------------------
consensus_11662#0 AGCACGGATGACTTTGTTGTGGACCAGAAGTTGAGGAAAAAGAAAACATTCTTCCCACAA 2460
consensus_11662#1 AGCACGGATGACTTTGTTGTGGACCAGAAGTTGAGGAAAAAGAAAACATTCTTCCCACAA 281
consensus_11662#2 -----------------------------------------------------------A 1
*
consensus_11662#0 ATGTCAAGCATTTTGTCTAGAAAGGCACAGACGTAGACCTATAAGATTAGTCCTGTACAG 2520
consensus_11662#1 ATGTCAAGCATTTTGTCTAGAAAGGCACAGACGTAGACCTATAAGATTAGTCCTGTACAG 341
consensus_11662#2 CCGTTANGGACCCTTATTAAAGGATTAAGTTCCCTGTACCAGGCCAATTATCCTTTACTG 61
** * * * * ** * * * * * * * * **** *** *
consensus_11662#0 GCATATCTTACTGTACATTGTACACTGCAAAAATGTAAATGGTGTGTTTGAGTACATAAG 2580
consensus_11662#1 GCATATCTTACTGTACATTGTACACTGCAAAAATGTAAATGGTGTGTTTGAGTACATAAG 401
consensus_11662#2 N------TTAC-ATTTGTTAC-CACTGCAAAAATGTAAATGGTGTGTTTGAGTACATAAG 113
**** * ** **************************************
consensus_11662#0 TTTATTTTCCACAACCCTGTCACTTGG-TGTGGATACGTG-AGGGCATACTTTTGTATGA 2638
consensus_11662#1 TTTATTTTCCACAACCCTGTCACTTGG-TGTGGATACGTG-AGGGCATACTTTTGTATGA 459
consensus_11662#2 TTTATTTTCCACAACCCTGTCACTTNGGTGTGGATACGTNGAGGGCATACTTTTGTATGA 173
************************* * *********** *******************
consensus_11662#0 TAATTTTGGATATTTTTTTATACTATAGTTCCTTCGTTTCCAAAACTCAGAGGCAATA-- 2696
consensus_11662#1 TAATTTTGGATATTTTTTTATACTATAGTTCCTTCGTTTCCAAAACTCAGAGGCAATA-- 517
consensus_11662#2 TAATTTTGGATATTTTTTTATACTATAGTTCCTTCGTTTCCAAAACTCAGAGGCAATNAT 233
*********************************************************
consensus_11662#0 TGTATGTCTGTTTCTGATGTTAG-TCATGAAAGCAAGAATTTTCTGTAACAAAAATTGTC 2755
consensus_11662#1 TGTATGTCTGTTTCTGATGTTAG-TCATGAAAGCAAGAATTTTCTGTAAAAAAAAAAAAA 576
consensus_11662#2 NGTATGTCTGTTTCTGATGTTANGTCATGAAAGCAAGAATTTTCTGTAACAAAAATTGTC 293
********************* ************************* *****
consensus_11662#0 AATTATGAAAACAGATTGAAGTTTGAATACGTGATTCAAGT 2796
consensus_11662#1 AA--------------------------------------- 578
consensus_11662#2 AATTATGAAAACAGATTGAAGTTTGAAAAAAAA-------- 326
**
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||