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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11710#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2136 fasta sequence
[CGCCGTCCCGATCCACTCACCGCCCGGCGCACCACCCCTCGGCGGCGGATGGCGAGGTCGGCGGCGCGGAGCGCGGGGGACGGTGGGAGCTCCTCCCTTCTCCTTCCACGGACGGCGCTCCTCCTACGTCGCGGCTTCCTCTCTCCTCTCCTCACATCATGGCGGCGGTCAAGAGGCCGGGGACGCGGCGGCGGAGGAGGCCGAGACGGGGGTGGAGCCACCGATTCCCCGCGCCCCGACGAGCTCGGCGGAGTGGCGCGGAGCTCGCCGGCGTGGAGCGGGATGGCACGGAGCTCGGCCAGGTGAGAGAGAGAGCAGAGGCCCTAAGATCTAATAGGTCAGGTCAGGGCGCCGCCGCCGCCACTCCTACCCACCACCTGTTTCTCACTCAGTCCCAGCTCGATCTCATGCAGCCTCCTCTCGCCAGCCACTTCCGTCGCCATCCCTCTGCGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGCGAGGCGATTGAACCCGAGCGAATCGTCAGCAGCAGATCGAGGCGCCGTGCCTGGGTCTCGTCAGATTTCCAGCCCAGCAAGGCAAGGCCCAAGGACCTAAACTGTTGGGCTGTTGGGCTCGATCAAGTCAGTATATGTCCA-GGGATGCGGCGGCCCGACCACGCTGCTTCACGTCGGGCCCACCTGTCCGTCCCTTCTTCGGCTTGAAAACTCCCCGCATCCGCGCGCTCAACGTCCTCCTCCTCTGTTCTCTCCTCTTCTCTCTCGCTGCGCCAAGGATCAAGAAATCCCTTGCCAGTCGCCGCCGTCCGTCTCCTCCTCCTCAACACCACCACACCTTCGGAGCCGCAGCTCATCGGCGGCTACCTCCTCTTCTTGGGTGTCATGCCCCTGCCGGCGACTCCCGCCTACGGCGCCGTCCATCTACCGCGCCACACCGGTGTCTCCATGGACACCAGCGCTGAGGCCATCTTCGTCGGACCATCACCGCCTGTTACGGCTGACATCGAGGAGTCCTTAAGTGATTACACAAGTATGATGGAGGGTTGGACTAAAGAGCATGTATTGGCAGCACGTGGTCTTCGTAATAAGGTTGCGCCTATTCGTGTTGAGGCCATGCGCCTAGGGATTGCTGCTGACAGTGCTGGAATCACATGTTTTTTGGATGCTTTTGATGAGTGTATGAAGCGAGTTGATCTGCATCTAGTTACTCAGAAGAACTCATTTCAAGAATTTCTTGGTAGTCCACTACAGCAAACAGTTCCAGACACTTGTGCGATTGTCTCTTCCACCAAGTGCGTAGAGGTACAGCATAGAAGGGAGTACGAGACTATGCACGGGACTGGCTCCTTCCCCTGCAACGCCGCGGCCCCCCGCAAGCTGCGTAGGGCCTGCTTCTGCCAGAAGGTGTGGAAGCCGAAAGAAGGAGCTCGAGTGGGAGATGTGATTGATATGATACAGAGGTTAGGTGGAGCGAGGACGACAAGCGCACCAGCTCCAGCGCCATATATGCTGCCAGTGCGCTCGTGGCAGCGGCACCGGTGGGACGTTGGTGGTGGCCTGACTGCGGACCGCATCGCCGAGCTTCTTGACACACGCGGGCCTTTCATTGGAACCATATGGGTATGCCCATGGTATGATTTGTTCAACTCGGTTGAAGATGAAGATCTGGTTTACAGGTCAGGCTGTGCACGGAGCAAGATGCTTCAGAGGTTGAGCAAGTTCTGTTTTGGAAAGGATCTCGTCGGCCTTCATTCAGTGTTGTGCTTTGAATACCGCATCTGCGACGGACAACTCCACATACACATCTTGGATAACCACGAGACCACTGGACCGCAGCGATGGATTCATCACTCCGAGTTGGAGGAGGTGCATACCATCACTGTGGAGCGGATCAATCATCTTGGTGACCGCCACATCAGGTATCCACACAGCGGAGTGTCTTGACTTGGAGTGTCTTTGTTCGTTTTCGTTTTCGTTCTCACTCGAAAACGAAAAACAACAAAACTCACGCCCTCTTGTGTTGCGCCTTGTATTTGTTACTGATTCTTCCTTTTGTTAATGTTCTTGTATATATACTCCGTATATCAACTTCCTTGTAACCATATCACTACATTTGTCATCTCCTCGAGAAAAAAAATATTCTAGAC]
[+] EMBL CB665060 [CGCCGTCCCGATCCACTCACCGCCCGGCGCACCACCCCTCGGCGGCGGATGGCGAGGTCGGCGGCGCGGAGCGCGGGGGACGGTGGGAGCTCCTCCCTTCTCCTTCCACGGACGGCGCTCCTCCTACGTCGCGGCTTCCTCTCTCCTCTCCTCACATCATGGCGGCGGTCAAGAGGCCGGGGACGCGGCGGCGGAGGAGGCCGAGACGGGGGTGGAGCCACCGATTCCCCGCGCCCCGACGAGCTCGGCGGAGTGGCGCGGAGCTCGCCGGCGTGGAGCGGGATGGCACGGAGCTCGGCCAGGTGAGAGAGAGAGCAGAGGCCCTAAGATCTAATAGGTCAGGTCAGGGCGCCGCCGCCGCCACTCCTACCCACCACCTGTTTCTCACTCAGTCCCAGCTCGATCTCATGCAGCCTCCTCTCGCCAGCCACTTCCGTCGCCATCCCTCTGCGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGCGAGGCGATTGAACCCGAGCGAATCGTCAGCAGCAGATCGAGGCGCCGTGCCTGGGTCTCGTCAGATTTCCAGCCCAGCAAGGCAAGGCCCAAGGACCTAAACTGTTGGGCTGTTGGGCTCGATCAAGTCAGTATATGTCCAGGGGATGCGGCGGCCCGACCACGCTGCTTCACGTCGGGCCCACCTGTCCGTCCCTTCTTCGGCTTGAAAACTCCCCGCATCCGCGCGCTCAACGTCCTCCTCCTCTGTTCTCTCCTCTTCTCTCTCGCTGCGCCAAGGATCAAGAAATCCCTTGCCAGTCGCCGCCGTC ]
[+] EMBL AK106509 [ CGCCGCCGCCACTCCTACCCACCACCTGTTTCTCACTCAGTCCCAGCTCGATCTCATGCAGCCTCCTCTCGCCAGCCACTTCCGTCGCCATCCCTCTGCGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGCGAGGCGATTGAACCCGAGCGAATCGTCAGCAGCAGATCGAGGCGCCGTGCCTGGGTCTCGTCAGATTTCCAGCCCAGCAAGGCAAGGCCCAAGGACCTAAACTGTTGGGCTGTTGGACTCGATCAAGTCAGTATATGTCCA GGGATGCGGCGGCCCGACCACGCTGCTTCACGTCGGGCCCACCTGTCCGTCCCTTCTTCGGCTTGAAAACTCCCCGCATCCGCGCGCTCAACGTCCTCCTCCTCTGTTCTCTCCTCTTCTCTCTCGCTGCGCCAAGGATCAAGAAATCCCTTGCCAGTCGCCGCCGTCCGTCTCCTCCTCCTCAACACCACCACACCTTCGGAGCCGCAGCTCATCGGCGGCTACCTCCTCTTCTTGGGTGTCATGCCCCTGCCGGCGACTCCCGCCTACGGCGCCGTCCATCTACCGCGCCACACCGGTGTCTCCATGGACACCAGCGCTGAGGCCATCTTCGTCGGACCATCACCGCCTGTTACGGCTGACATCGAGGAGTCCTTAAGTGATTACACAAGTATGATGGAGGGTTGGACTAAAGAGCATGTATTGGCAGCACGTGGTCTTCGTAATAAGGTTGCGCCTATTCGTGTTGAGGCCATGCGCCTAGGGATTGCTGCTGACAGTGCTGGAATCACATGTTTTTTGGATGCTTTTGATGAGTGTATGAAGCGAGTTGATCTGCATCTAGTTACTCAGAAGAACTCATTTCAAGAATTTCTTGGTAGTCCACTACAGCAAACAGTTCCAGACACTTGTGCGATTGTCTCTTCCACCAAGTGCGTAGAGGTACAGCATAGAAGGGAGTACGAGACTATGCACGGGACTGGCTCCTTCCCCTGCAACGCCGCGGCCCCCCGCAAGCTGCGTAGGGCCTGCTTCTGCCAGAAGGTGTGGAAGCCGAAAGAAGGAGCTCGAGTGGGAGATGTGATTGATATGATACAGAGGTTAGGTGGAGCGAGGACGACAAGCGCACCAGCTCCAGCGCCATATATGCTGCCAGTGCGCTCGTGGCAGCGGCACCGGTGGGACGTTGGTGGTGGCCTGACTGCGGACCGCATCGCCGAGCTTCTTGACACACGCGGGCCTTTCATTGGAACCATATGGGTATGCCCATGGTATGATTTGTTCAACTCGGTTGAAGATGAAGATCTGGTTTACAGGTCAGGCTGTGCACGGAGCAAGATGCTTCAGAGGTTGAGCAAGTTCTGTTTTGGAAAGGATCTCGTCGGCCTTCATTCAGTGTTGTGCTTTGAATACCGCATCTGCGACGGACAACTCCACATACACATCTTGGATAACCACGAGACCACTGGACCGCAGCGATGGATTCATCACTCCGAGTTGGAGGAGGTGCATACCATCACTGTGGAGCGGATCAATCATCTTGGTGACCGCCACATCAGGTATCCACACAGCGGAGTGTCTTGACTTGGAGTGTCTTTGTTCGTTTTCGTTTTCGTTCTCACTCGAAAACGAAAAACAACAAAACTCACGCCCTCTTGTGTTGCGCCTTGTATTTGTTACTGATTCTTCCTTTTGTTAATGTTCTTGTATATATACTCCGTATATCAACTTCCTTGTAACCATATCACTACATTTGTCATCTCCTCGAGAAAAAAAATATTCTAGAC]
[-] EMBL CB665061 [ GTGCGATTGTCTCTTCCACCAAGTGCGTAGAGGTACAGCATAGAAGGGAGTACGAGACTATGCACGGGACTGGCTCCTTCCCCTGCAACGCCGCGGCCCCCCGCAAGCTGCGTAGGGCCTGCTTCTGCCAGAAGGTGTGGAAGCCGAAAGAAGGAGCTCGAGTGGGAGATGTGATTGATATGATACAGAGGTTAGGTGGAGCGAGGACGACAAGCGCACCAGCTCCAGCGCCATATATGCTGCCAGTGCGCTCGTGGCAGCGGCACCGGTGGGACGTTGGTGGTGGCCTGACTGCGGACCGCATCGCCGAGCTTCTTGACACACGCGGGCCTTTCATTGGAACCATATGGGTATGCCCATGGTATGATTTGTTCAACTCGGTTGAAGATGAAGATCTGGTTTACAGGTCAGGCTGTGCACGGAGCAAGATGCTTCAGAGGTTGAGCAAGTTCTGTTTTGGAAAGGATCTCGTCGGCCTTCATTCAGTGTTGTGCTTTGAATACCGCATCTGCGACGGACAACTCCACATACACATCTTGGATAACCACGAGACCACTGGACCGCAGCGATGGATTCATCACTCCGAGTTGGAGGAGGTGCATACCATCACTGTGGAGCGGATCAATCATCTTGGTGACCGCCACATCAGGTATCCACACAGCGGAGTGTCTTGACTTGGAGTGTCTTTGTTCGTTTTCGTTTTCGTTCTCACTCGAAAACGAAAAACAACAAAACTCACGCCCTCTTGTGTTGCGCCTTGTATTTGTTACTGATTCTTCCTTTTGTTAATGTTCTTGTATATATACTCCGTATATCAACTTCCTTGTAACCATATCACTACAgt ]
consensusID : consensus_11710#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1571 fasta sequence
[CCTCTCCCTCACGTTCTCCGTCGCCGTCCCGATCCACTCACCGCCCGGCGCACCACCCCTCGGCGGCGGATGGCGAGGTCGGCGGCGCGGAGCGCGGGGGACGGTGGGAGCTCCTCCCTTCTCCTTCCACGGACGGCGCTCCTCCTACGTCGCGGCTTCCTCTCTCCTCTCCTCACATCATGGCGGCTTGAAAACTCCCCGCATCCGCGCGCTCAACGTCCTCCTCCTCTGTTCTCTCCTCTTCTCTCTCGCTGCGCCAAGGATCAAGAAATCCCTTGCCAGTCGCCGCCGTCCGTCTCCTCCTCCTCAACACCACCACACCTTCGGAGCCGCAGCTCATCGGCGGCTACCTCCTCTTCTTGGGTGTCATGCCCCTGCCGGCGACTCCCGCCTACGGCGCCGTCCATCTACCGCGCCACACCGGTGTCTCCATGGACACCAGCGCTGAGGCCATCTTCGTCGGACCATCACCGCCTGTTACGGCTGACATCGAGGAGTCCTTAAGTGATTACACAAGTATGATGGAGGGTTGGACTAAAGAGCATGTATTGGCAGCACGTGGTCTTCGTAATAAGGTTGCGCCTATTCGTGTTGAGGCCATGCGCCTAGGGATTGCTGCTGACAGTGCTGGAATCACATGTTTTTTGGATGCTTTTGATGAGTGTATGAAGCGAGTTGATCTGCATCTAGTTACTCAGAAGAACTCATTTCAAGAATTTCTTGGTAGTCCACTACAGCAAACAGTTCCAGTGCGTAGAGGTACAGCATAGAAGGGAGTACGAGACTATGCACGGGACTGGCTCCTTCCCCTGCAACGCCGCGGCCCCCCGCAAGCTGCGTAGGGCCTGCTTCTGCCAGAAGGTGTGGAAGCCGAAAGAAGGAGCTCGAGTGGGAGATGTGATTGATATGATACAGAGGTTAGGTGGAGCGAGGACGACAAGCGCACCAGCTCCAGCGCCATATATGCTGCCAGTGCGCTCGTGGCAGCGGCACCGGTGGGACGTTGGTGGTGGCCTGACTGCGGACCGCATCGCCGAGCTTCTTGACACACGCGGGCCTTTCATTGGAACCATATGGGTATGCCCATGGTATGATTTGTTCAACTCGGTTGAAGATGAAGATCTGGTTTACAGGTCAGGCTGTGCACGGAGCAAGATGCTTCAGAGGTTGAGCAAGTTCTGTTTTGGAAAGGATCTCGTCGGCCTTCATTCAGTGTTGTGCTTTGAATACCGCATCTGCGACGGACAACTCCACATACACATCTTGGATAACCACGAGACCACTGGACCGCAGCGATGGATTCATCACTCCGAGTTGGAGGAGGTGCATACCATCACTGTGGAGCGGATCAATCATCTTGGTGACCGCCACATCAGGTATCCACACAGCGGAGTGTCTTGACTTGGAGTGTCTTTGTTCGTTTTCGTTTTCGTTCTCACTCGAAAACGAAAAACAACAAAACTCACGCCCTCTTGTGTTGCGCCTTGTATTTGTTACTGATTCTTCCTTTTGTTAATGTTCTTGTATATATACTCCNGTATATCAACTTCCTTGTAACCATATCACTACAT]
[+] EMBL CB643427 [CCTCTCCCTCACGTTCTCCGTCGCCGTCCCGATCCACTCACCGCCCGGCGCACCACCCCTCGGCGGCGGATGGCGAGGTCGGCGGCGCGGAGCGCGGGGGACGGTGGGAGCTCCTCCCTTCTCCTTCCACGGACGGCGCTCCTCCTACGTCGCGGCTTCCTCTCTCCTCTCCTCACATCATGGCGGCTTGAAAACTCCCCGCATCCGCGCGCTCAACGTCCTCCTCCTCTGTTCTCTCCTCTTCTCTCTCGCTGCGCCAAGGATCAAGAAATCCCTTGCCAGTCGCCGCCGTCCGTCTCCTCCTCCTCAACACCACCACACCTTCGGAGCCGCAGCTCATCGGCGGCTACCTCCTCTTCTTGGGTGTCATGCCCCTGCCGGCGACTCCCGCCTACGGCGCCGTCCATCTACCGCGCCACACCGGTGTCTCCATGGACACCAGCGCTGAGGCCATCTTCGTCGGACCATCACCGCCTGTTACGGCTGACATCGAGGAGTCCTTAAGTGATTACACAAGTATGATGGAGGGTTGGACTAAAGAGCATGTATTGGCAGCACGTGGTCTTCGTAATAAGGTTGCGCCTATTCGTGTTGAGGCCATGCGCCTAGGGATTGCTGCTGACAGTGCTGGAATCACATGTTTTTTGGATGCTTTTGATGAGTGTATGAAGCGAGTTGATCTGCATCTAGTTACTCAGAAGAACTCATTTCAAGAATTTCTTGGTAGTCCACTACAGCAAACAGTTCCAGTGCGTAGAGGTACAGCATAGAAGGGAGTACGAGACTATGCACGGGACTGGCTCCTT CCCTGCAACGCCGC ]
[+] EMBL CB657139 [ GCGCGCTCAACGTCCTCCTCCTCTGTTCTCTCCTCTTCTCTCTCGCTGCGCCAAGGATCAAGAAATCCCTTGCCAGTCGCCGCCGTCCGTCTCCTCCTCCTCAACACCACCACACCTTCGGAGCCGCAGCTCATCGGCGGCTACCTCCTCTTCTTGGGTGTCATGCCCCTGCCGGCGACTCCCGCCTACGGCGCCGTCCATCTACCGCGCCACACCGGTGTCTCCATGGACACCAGCGCTGAGGCCATCTTCGTCGGACCATCACCGCCTGTTACGGCTGACATCGAGGAGTCCTTAAGTGATTACACAAGTATGATGGAGGGTTGGACTAAAGAGCATGTATTGGCAGCACGTGGTCTTCGTAATAAGGTTGCGCCTATTCGTGTTGAGGCCATGCGCCTAGGGATTGCTGCTGACAGTGCTGGAATCACATGTTTTTTGGATGCTTTTGATGAGTGTATGAAGCGAGTTGATCTGCATCTAGTTACTCAGAAGAACTCATTTCAAGAATTTCTTGGTAGTCCACTACAGCAAACAGTTCCAGTGCGTAGAGGTACAGCATAGAAGGGAGTACGAGACTATGCACGGGACTGGCTCCTTCCCCTGCAACGCCGCGGCCCCCCGCAAGCTGCGTAGGGCCTGCTTCTGCCAGAAGGTGTGGAAGCCGAAAGAAGGAGCTCGAGTGGGAGATGTGATTGATATGATACAGAGGTTAGGTGGAGCGAGGACGACAAGCGCACCAGCTCCAGCGCCAT ]
[-] EMBL CB657140 [ TTCAAGAATTTCTTGGTAGTCCACTACAGCAAACAGTTCCAGTGCGTAGAGGTACAGCATAGAAGGGAGTACGAGACTATGCACGGGACTGGCTCTTTCCCCTGCAACGCCGCGGCCCCCCGCAAGCTGCGTAGGGCCTGCTTCTGCCAGAAGGTGTGGAAGCCGAAAGAAGGAGCTCGAGTGGGAGATGTGATTGATATGATACAGAGGTTAGGTGGAGCGAGGACGACAAGCGCACCAGCTCCAGCGCCATATATGCTGCCAGTGCGCTCGTGGCAGCGGCACCGGTGGGACGTTGGTGGTGGCCTGACTGCGGACCGCATCGCCGAGCTTCTTGACACACGCGGGCCTTTCATTGGAACCATATGGGTATGCCCATGGTATGATTTGTTCAACTCGGTTGAAGATGAAGATCTGGTTTACAGGTCAGGCTGTGCACGGAGCAAGATGCTTCAGAGGTTGAGCAAGTTCTGTTTTGGAAAGGATCTCGTCGGCCTTCATTCAGTGTTGTGCTTTGAATACCGCATCTGCGACGGACAACTCCACATACACATCTTGGATAACCACGAGACCACTGGACCGCAGCGATGGATTCATCACTCCGAGTTGGAGGAGGTGCATACCATCACTGTGGAGCGGATCAATCATCTTGGTGACCGCCACATCAGGTATCCACACAGCGGAGTGTCTTGACTTGGAGTGTCTTTGTTCGTTTTCGTTTTCGTTCTCACTCGAAAACGAAAAACAACAAAACTCACGCCCTCTTGTGTTGCGCCTTGTATTTGTTACTGATTCTTCCTTTTGTTAATGTTCTTGTATATATACTCCNGTATATCAACTTCCTTGTAACCATATCACTACAT]
[-] EMBL CB643428 [ TCCAGTGCGTAGAGGTACAGCATAGAAGGGAGTACGAGACTATGCACGGGACTGGCTCCTTCCCCTGCAACGCCGCGGCCCCCCGCAAGCTGCGTAGGGCCTGCTTCTGCCAGAAGGTGTGGAAGCCGAAAGAAGGAGCTCGAGTGGGAGATGTGATTGATATGATACAGAGGTTAGGTGGAGCGAGGACGACAAGCGCACCAGCTCCAGCGCCATATATGCTGCCAGTGCGCTCGTGGCAGCGGCACCGGTGGGACGTTGGTGGTGGCCTGACTGCGGACCGCATCGCCGAGCTTCTTGACACACGCGGGCCTTTCATTGGAACCATATGGGTATGCCCATGGTATGATTTGTTCAACTCGGTTGAAGATGAAGATCTGGTTTACAGGTCAGGCTGTGCACGGAGCAAGATGCTTCAGAGGTTGAGCAAGTTCTGTTTTGGAAAGGATCTCGTCGGCCTTCATTCAGTGTTGTGCTTTGAATACCGCATCTGCGACGGACAACTCCACATACACATCTTGGATAACCACGAGACCACTGGACCGCAGCGATGGATTCATCACTCCGAGTTGGAGGAGGTGCATACCATCACTGTGGAGCGGATCAATCATCTTGGTGACCGCCACATCAGGTATCCACACAGCGGAGTGTCTTGACTTGGAGTGTCTTTGTTCGTTTTCGTTTTCGTTCTCACTCGAAAACGAAAAACAACAAAACTCACGCCCTCTTGTGTTGCGCCTTGTATTTGTTACTGATTCTTCCTTTTGTTAATGTTCTTGTATATATAGTCCNGTATATCAACTTCCTTGTAACCATATCACTACAT]
[-] EMBL CB652136 [ GCATAGAAGGGAGTACGAGACTATGCACGGGACTGGCTCCTTCCCCTGCAACGCCGCGGCCCCCCGCAAGCTGCGTAGGGCCTGCTTCTGCCAGAAGGTGTGGAAGCCGAAAGAAGGAGCTCGAGTGGGAGATGTGATTGATATGATACAGAGGTTAGGTGGAGCGAGGACGACAAGCGCACCAACTCCAGCGCCATATATGCTGCCAGTGCGCTCGTGGCAGCGGCACCGGTGGGACGTTGGTGGTGGCCTGACTGCGGACCGCATCGCCGAGCTTCTTGACACACGCGGGCCTTTCATTGGAACCATATGGGTATGCCCATGGTATGATTTGTTCAACTCGGTTGAAGATGAAGATCTGGTTTACAGGTCAGGCTGTGCACGGAGCAAGATGCTTCAGAGGTTGAGCAAGTTCTGTTTTGGAAAGGATCTCGTCGGCCTTCATTCAGTGTTGTGCTTTGAATACCGCATCTGCGACGGACAACTCCACATACACATCTTGGATAACCACGAGACCACTGGACCGCAGCGATGGATTCATCACTCCGAGTTGGAGGAGGTGCATACCATCACTGTGGAGCGGATCAATCATCTTGGTGACCGCCACATCAGGTATCCACACAGCGGAGTGTCTTGACTTGGAGTGTCTTTGTTCGTTTTCGTTTTCGTTCTCACTCGAAAACGAAAAACAACAAAACTCACGCCCTCTTGTGTTGCGCCTTGTATTTGTTACTGATTCTTCCTTTTGTTAATGTTTTTGAAGATATAC ]
consensusID : consensus_11710#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 394 fasta sequence
[GCCGCTATTTTCAGTTATTAAGCTTCCTTATCTAATATTGTAACTGGTGGTTTCCAAAAATTCTATGGTACATTTTGGGATAATGTTTGAAGTTTCACCTGTCAAAGTTGTGCTCTGTCTGGGCTTGCTCCCTGGGAACAGTAGTCTATTGTGATATGCTTATTATGAATTGGGTTAGCATCAGATTCTCTGGATGAGCGTCGAGTTATGTTAGAATCTGCTTGTCATGTTGTATTACACATTGTGTGATGTGATTGTAAGTTGTAACAGGAGTCCTTAAGTGATTACACAAGTATGATGGAGGGTTGGACTAAAGAGCATGTATTGGCAGCACGTGGTCTTCGTAATAAGGTCGCGCCTATTCGTGATGAGGCCATGCGCCTAGGGATTGCTG]
[+] EMBL AU225512 [GCCGCTATTTTCAGTTATTAAGCTTCCTTATCTAATATTGTAACTGGTGGTTTCCAAAAATTCTATGGTACATTTTGGGATAATGTTTGAAGTTTCACCTGTCAAAGTTGTGCTCTGTCTGGGCTTGCTCCCTGGGAACAGTAGTCTATTGTGATATGCTTATTATGAATTGGGTTAGCATCAGATTCTCTGGATGAGCGTCGAGTTATGTTAGAATCTGCTTGTCATGTTGTATTACACATTGTGTGATGTGATTGTAAGTTGTAACAGGAGTCCTTAAGTGATTACACAAGTATGATGGAGGGTTGGACTAAAGAGCATGTATTGGCAGCACGTGGTCTTCGTAATAAGGTCGCGCCTATTCGTGATGAGGCCATGCGCCTAGGGATTGCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11710#0 CGCCGTCCCGATCCACTCACCGCCCGGCGCACCACCCCTCGGCGGCGGATGGCGAGGTCG 60
consensus_11710#1 ------------------------------------------------------------
consensus_11710#2 ------------------------------------------------------------
consensus_11710#0 GCGGCGCGGAGCGCGGGGGACGGTGGGAGCTCCTCCCTTCTCCTTCCACGGACGGCGCTC 120
consensus_11710#1 ------------------------------------------------------------
consensus_11710#2 ------------------------------------------------------------
consensus_11710#0 CTCCTACGTCGCGGCTTCCTCTCTCCTCTCCTCACATCATGGCGGCGGTCAAGAGGCCGG 180
consensus_11710#1 ------------------------------------------------------------
consensus_11710#2 ------------------------------------------------------------
consensus_11710#0 GGACGCGGCGGCGGAGGAGGCCGAGACGGGGGTGGAGCCACCGATTCCCCGCGCCCCGAC 240
consensus_11710#1 ------------------------------------------------------------
consensus_11710#2 ------------------------------------------------------------
consensus_11710#0 GAGCTCGGCGGAGTGGCGCGGAGCTCGCCGGCGTGGAGCGGGATGGCACGGAGCTCGGCC 300
consensus_11710#1 ------------------------------------------------------------
consensus_11710#2 ------------------------------------------------------------
consensus_11710#0 AGGTGAGAGAGAGAGCAGAGGCCCTAAGATCTAATAGGTCAGGTCAGGGCGCCGCCGCCG 360
consensus_11710#1 ------------------------------------------------------------
consensus_11710#2 ------------------------------------------------------------
consensus_11710#0 CCACTCCTACCCACCACCTGTTTCTCACTCAGTCCCAGCTCGATCTCATGCAGCCTCCTC 420
consensus_11710#1 ------------------------------------------------------------
consensus_11710#2 ------------------------------------------------------------
consensus_11710#0 TCGCCAGCCACTTCCGTCGCCATCCCTCTGCGGCGGTGGCGGTGGCGGTGGCGGTGGCGG 480
consensus_11710#1 ------------------------------------------------------------
consensus_11710#2 ------------------------------------------------------------
consensus_11710#0 TGGCGGCGAGGCGATTGAACCCGAGCGAATCGTCAGCAGCA-GATCGAGGCGCCGTGCCT 539
consensus_11710#1 ------------CCTCTCCCTCACGTTCTCCGTCGCCGTCCCGATCCACTCACCGC-CCG 47
consensus_11710#2 ------------------------------------------------------------
consensus_11710#0 GGGTCTCGTCAGATTTCCAGCCCAGCAAGGCAAGGCCCAAGGACCTAAACTGTTGGGCTG 599
consensus_11710#1 GCGCACCACC----CCTCGGCGGCGGATGGCGAGGTCGGCGGCGCGGAGCGCGGGGGACG 103
consensus_11710#2 ------------------------------------------------------------
consensus_11710#0 TTGGGCTCGATCAAGTCAGTATATGTCCAGGGATGCGGCGGCCCGACCACGCTGCTTCAC 659
consensus_11710#1 GTGGG---AGCTCCTCCCTTCTCCTTCCACGGA--CGGCGCTCCTCCTACGTCGCGGCTT 158
consensus_11710#2 ------------------------------------------------------------
consensus_11710#0 GTCGGGCCCACCTGTCCGTCCCTTCTT-CGGCTTGAAAACTCCCCGCATCCGCGCGCTCA 718
consensus_11710#1 CCT---CTCTCCTCTCCTCACATCATGGCGGCTTGAAAACTCCCCGCATCCGCGCGCTCA 215
consensus_11710#2 ------------------------------------------------GCCGC-TATTTT 11
**** *
consensus_11710#0 ACGTCCTCCTCCTCTGTTCTCTCCTCTTCTCTCTCGCTGCG-CCAAGGATCAAGAAATCC 777
consensus_11710#1 ACGTCCTCCTCCTCTGTTCTCTCCTCTTCTCTCTCGCTGCG-CCAAGGATCAAGAAATCC 274
consensus_11710#2 CAGTTATTAAGCTTCCTTATCTAATATTGTAACTGGTGGTTTCCAAAAATTCTATGGTAC 71
** * ** ** *** * ** * ** * * **** ** * *
consensus_11710#0 CTTGCCAGTCGCCGCCGTCCGTCTCCTCCTCCTCAACACCACCACACCTTCGGAGCCGCA 837
consensus_11710#1 CTTGCCAGTCGCCGCCGTCCGTCTCCTCCTCCTCAACACCACCACACCTTCGGAGCCGCA 334
consensus_11710#2 ATTTTGGGATAATGTTTGAAGTTTCACCTG--TCAAAGTTGT-GCTCTGTCTGGGCT--T 126
** * * ** ** * **** * * ** * **
consensus_11710#0 GCTCATCGGCGGCTACCTCCTCTTCTTGGGTGTCATGCCCCTGCCGGCGACTCCCGCCTA 897
consensus_11710#1 GCTCATCGGCGGCTACCTCCTCTTCTTGGGTGTCATGCCCCTGCCGGCGACTCCCGCCTA 394
consensus_11710#2 GCTCCCTGGGAACAGTAGTCTATTGT--GATATGCTTATTATGAATTGGGTTAGCATCAG 184
**** ** * ** ** * * * * * ** * * * *
consensus_11710#0 CGGCGCCGTCCATCTACCGCGCCACACCGGTGTCTCCATGGACACCAGCGCTGAGGCCAT 957
consensus_11710#1 CGGCGCCGTCCATCTACCGCGCCACACCGGTGTCTCCATGGACACCAGCGCTGAGGCCAT 454
consensus_11710#2 ATTCTCTGGATGAGCGTCGAGTTATGTTAGAATCTGCTTG-----TCATGTTGTATTACA 239
* * * ** * * * *** * ** * **
consensus_11710#0 CTTCGTCGGACCATCACCGCCTGTTACGGCTGACATCGAGGAGTCCTTAAGTGATTACAC 1017
consensus_11710#1 CTTCGTCGGACCATCACCGCCTGTTACGGCTGACATCGAGGAGTCCTTAAGTGATTACAC 514
consensus_11710#2 CATTGTGTGAT-GTGATTGTAAGTTGTAAC--------AGGAGTCCTTAAGTGATTACAC 290
* * ** ** * * * *** * **********************
consensus_11710#0 AAGTATGATGGAGGGTTGGACTAAAGAGCATGTATTGGCAGCACGTGGTCTTCGTAATAA 1077
consensus_11710#1 AAGTATGATGGAGGGTTGGACTAAAGAGCATGTATTGGCAGCACGTGGTCTTCGTAATAA 574
consensus_11710#2 AAGTATGATGGAGGGTTGGACTAAAGAGCATGTATTGGCAGCACGTGGTCTTCGTAATAA 350
************************************************************
consensus_11710#0 GGTTGCGCCTATTCGTGTTGAGGCCATGCGCCTAGGGATTGCTGCTGACAGTGCTGGAAT 1137
consensus_11710#1 GGTTGCGCCTATTCGTGTTGAGGCCATGCGCCTAGGGATTGCTGCTGACAGTGCTGGAAT 634
consensus_11710#2 GGTCGCGCCTATTCGTGATGAGGCCATGCGCCTAGGGATTGCTG---------------- 394
*** ************* **************************
consensus_11710#0 CACATGTTTTTTGGATGCTTTTGATGAGTGTATGAAGCGAGTTGATCTGCATCTAGTTAC 1197
consensus_11710#1 CACATGTTTTTTGGATGCTTTTGATGAGTGTATGAAGCGAGTTGATCTGCATCTAGTTAC 694
consensus_11710#2 ------------------------------------------------------------
consensus_11710#0 TCAGAAGAACTCATTTCAAGAATTTCTTGGTAGTCCACTACAGCAAACAGTTCCAGACAC 1257
consensus_11710#1 TCAGAAGAACTCATTTCAAGAATTTCTTGGTAGTCCACTACAGCAAACAGTTCCAG---- 750
consensus_11710#2 ------------------------------------------------------------
consensus_11710#0 TTGTGCGATTGTCTCTTCCACCAAGTGCGTAGAGGTACAGCATAGAAGGGAGTACGAGAC 1317
consensus_11710#1 -------------------------TGCGTAGAGGTACAGCATAGAAGGGAGTACGAGAC 785
consensus_11710#2 ------------------------------------------------------------
consensus_11710#0 TATGCACGGGACTGGCTCCTTCCCCTGCAACGCCGCGGCCCCCCGCAAGCTGCGTAGGGC 1377
consensus_11710#1 TATGCACGGGACTGGCTCCTTCCCCTGCAACGCCGCGGCCCCCCGCAAGCTGCGTAGGGC 845
consensus_11710#2 ------------------------------------------------------------
consensus_11710#0 CTGCTTCTGCCAGAAGGTGTGGAAGCCGAAAGAAGGAGCTCGAGTGGGAGATGTGATTGA 1437
consensus_11710#1 CTGCTTCTGCCAGAAGGTGTGGAAGCCGAAAGAAGGAGCTCGAGTGGGAGATGTGATTGA 905
consensus_11710#2 ------------------------------------------------------------
consensus_11710#0 TATGATACAGAGGTTAGGTGGAGCGAGGACGACAAGCGCACCAGCTCCAGCGCCATATAT 1497
consensus_11710#1 TATGATACAGAGGTTAGGTGGAGCGAGGACGACAAGCGCACCAGCTCCAGCGCCATATAT 965
consensus_11710#2 ------------------------------------------------------------
consensus_11710#0 GCTGCCAGTGCGCTCGTGGCAGCGGCACCGGTGGGACGTTGGTGGTGGCCTGACTGCGGA 1557
consensus_11710#1 GCTGCCAGTGCGCTCGTGGCAGCGGCACCGGTGGGACGTTGGTGGTGGCCTGACTGCGGA 1025
consensus_11710#2 ------------------------------------------------------------
consensus_11710#0 CCGCATCGCCGAGCTTCTTGACACACGCGGGCCTTTCATTGGAACCATATGGGTATGCCC 1617
consensus_11710#1 CCGCATCGCCGAGCTTCTTGACACACGCGGGCCTTTCATTGGAACCATATGGGTATGCCC 1085
consensus_11710#2 ------------------------------------------------------------
consensus_11710#0 ATGGTATGATTTGTTCAACTCGGTTGAAGATGAAGATCTGGTTTACAGGTCAGGCTGTGC 1677
consensus_11710#1 ATGGTATGATTTGTTCAACTCGGTTGAAGATGAAGATCTGGTTTACAGGTCAGGCTGTGC 1145
consensus_11710#2 ------------------------------------------------------------
consensus_11710#0 ACGGAGCAAGATGCTTCAGAGGTTGAGCAAGTTCTGTTTTGGAAAGGATCTCGTCGGCCT 1737
consensus_11710#1 ACGGAGCAAGATGCTTCAGAGGTTGAGCAAGTTCTGTTTTGGAAAGGATCTCGTCGGCCT 1205
consensus_11710#2 ------------------------------------------------------------
consensus_11710#0 TCATTCAGTGTTGTGCTTTGAATACCGCATCTGCGACGGACAACTCCACATACACATCTT 1797
consensus_11710#1 TCATTCAGTGTTGTGCTTTGAATACCGCATCTGCGACGGACAACTCCACATACACATCTT 1265
consensus_11710#2 ------------------------------------------------------------
consensus_11710#0 GGATAACCACGAGACCACTGGACCGCAGCGATGGATTCATCACTCCGAGTTGGAGGAGGT 1857
consensus_11710#1 GGATAACCACGAGACCACTGGACCGCAGCGATGGATTCATCACTCCGAGTTGGAGGAGGT 1325
consensus_11710#2 ------------------------------------------------------------
consensus_11710#0 GCATACCATCACTGTGGAGCGGATCAATCATCTTGGTGACCGCCACATCAGGTATCCACA 1917
consensus_11710#1 GCATACCATCACTGTGGAGCGGATCAATCATCTTGGTGACCGCCACATCAGGTATCCACA 1385
consensus_11710#2 ------------------------------------------------------------
consensus_11710#0 CAGCGGAGTGTCTTGACTTGGAGTGTCTTTGTTCGTTTTCGTTTTCGTTCTCACTCGAAA 1977
consensus_11710#1 CAGCGGAGTGTCTTGACTTGGAGTGTCTTTGTTCGTTTTCGTTTTCGTTCTCACTCGAAA 1445
consensus_11710#2 ------------------------------------------------------------
consensus_11710#0 ACGAAAAACAACAAAACTCACGCCCTCTTGTGTTGCGCCTTGTATTTGTTACTGATTCTT 2037
consensus_11710#1 ACGAAAAACAACAAAACTCACGCCCTCTTGTGTTGCGCCTTGTATTTGTTACTGATTCTT 1505
consensus_11710#2 ------------------------------------------------------------
consensus_11710#0 CCTTTTGTTAATGTTCTTGTATATATACTCCG-TATATCAACTTCCTTGTAACCATATCA 2096
consensus_11710#1 CCTTTTGTTAATGTTCTTGTATATATACTCCNGTATATCAACTTCCTTGTAACCATATCA 1565
consensus_11710#2 ------------------------------------------------------------
consensus_11710#0 CTACATTTGTCATCTCCTCGAGAAAAAAAATATTCTAGAC 2136
consensus_11710#1 CTACAT---------------------------------- 1571
consensus_11710#2 ----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||