cluster # 11939

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Oryza sativa
cluster # 11939 cluster # 11939 Sequences # 9 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11939#0 length = 2423 sequences # 5
consensus_11939#1 length = 951 sequences # 1

consensus_11939#2 length = 645 sequences # 1
consensus_11939#3 length = 290 sequences # 1
consensus_11939#4 length = 287 sequences # 1

consensusID : consensus_11939#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 2423
fasta sequence

                              [CCTCGTCCTCTCGCCATGGCCGCACCATCCGCGAGCTCCCGTGCCTCCGCGATCTAGCGCGGCGCGGTGGCTCTCGCACCCCCGGCGTCGACGGAGCGCGGAGGAAGGCGGGCCTCCGTACAGAGGCAGTCGAGGGGCACGGGATTTAGGGGAGAGGGGTTGGGGGGATGGGGAGGAAGCCTGATCCGTCGAAGCCACACTACGGTGGCGGCGCCTCGCCGAGGGCAGCGAGGAGGACGCAGCCGTCGCCGGTTTTCCTGGGAACGGCGCTGTTCGTCCTAGGGTTTGTGTCCCTCTTCACGGGACACATCGTTACGGACGCCGACTGGTCCCGGATCCGGAGCCGGTGGCGATCCAAGCAGGTTAGAAATAACGAGCCCATAAATATTTGGAAATCGAGGTATTCCAACTTGTACTATGGATGCAGCAGGAGGAGCGTAAATTTCAGATCTGCTGTGCCGGAGAACAGTTCTACTGGTTACTTGCTGATTGGTACTAGCGGGGGACTAAATCAGCAGCGCATAGG-------GATAACAGATGCTGTTGTTGTCGCCCGAATATTGAATGCCACACTTGTTGTACCTGAGTTAGATCACCACTCATTCTGGAAGGATGATAGCGACTTCTCTGACATTTTTGACGTGGACTGGTTCATCTCTTACCTATCAAAGGATGTAACTATTGTCAAAAGAATCCCTTATGAGGTGATGATGTCAATGGATAAACTCCCATGGACCATGCGTGCGCCTA-GGAAATCCATG-CCT-GATTTTTACATTGATGAAGTTTTGCCTATCCTTATGCGAAGGCGAGCTTTGCAGCTAACAAAGTTTGATTATC-GGCTCACTAACGAGCTTGATGAAGAATTGCAGAAGTTACGCTGCCGAGT-AAATTTCCATGCATTAAGATTTACAAATTCCATACAAACTCTAGGTGAGAAATTGGTGCGCAAGCTGAGGAGCATGAGCTCACGATACGTTGCCGTTCACTTGAGG-TTGAGCCTGACATGCTTGCATTTTCTGGTTGTTACTATGGTGGTGGTGATAAAGAACGGAGGGAGTTAGGTGAAATTAGGAAAAGATGGGATACACTACCTGTAAGACTCTGAAACTTGGTGAGCTTAGGATCTGGATATATTTTTGTCGGTATTGCACTTCCTTTTTGTGGATTATTTCTTTTGCACTGATAAGGATGTGTTGGGTCAGATTTCCCTTAAAAACTATTGAGTGATAATGGCTGCTGTTAGTTCTGAGTGTCCATGTATTCTTTTGATCAATTAGTACCGATGGATCAATATTTGAATGATGAAATGATTTAGACTGATTCCTAGCAGGAGTTGAGCGCTGAGGATGAGCGCAGTAGGGGCAAATGTCCACTGACTCCTCAAGAAATTGGTTTGATGCTCCGAGCTCTTGGTTTTAGCAATGACACGTACCTGTATGTTGCTTCTGGAGAAATATATGGGGGAGAAGAAACTCTCCAGCCTCTGAGGGATCTCTTTCCAAACTACTACACCAAAGAAATGCTTGCTGGGAATGATTTGAAACCGTTCCTTCCGTTCTCTTCAAGATTGGCTGCAATTGATTTCATCGTATGTGACGGGAGTGATGTTTTTGTTACAAACAATAATGGAAACATGGCCAAGGTTTTAGCTGGACGAAGGCGATACATGGGCCACAAGAGAACCATTCGCCCAAATGCTAAAAAACTCAACTTACTATTTAAGAGACGGAAACAGATGGGATGGGATATATTTTCACAGAAGGTAAAGAAAGTGCAGAGGGGACTAATGGGAGAACCGGATGATATCAGACCAGGAAGAGATGATTTCAATGAATTTCCATCATCTTGCATCTGCCAAAGAATACCAGTCAATAGATCAGTCACAGCGCGAGCTGAAAACTTGTGAGCTCTAGTGTAGTGAGGCAGACAACTTGAGAACGGAGAATGCTGG-GTGA-TTGAGCACGTCCCTTG-CTGCACTGGGGAAAATACATGTTTGTTAAGCAAAGAAAACAGGGATGTAAACCCAATCAGACAGAAGCAGACGTGGTGGATAAATACTCTTACCGGCTTTAACTCATGGCACTCTGGTAGTCTGGTGGTTCAGACCCAGCAGAACTGGTTAGTGTGCAGCGATGAC-AGACA-AACTGCTGATTTGCAGCTTCAGTTTGGTTCCACTAATTGTTAAAACTGTGGTAAAGAATCTGCCACGATAATTGTAGTCATTAGCTCGATATGCTATCCCTGTAAATTGTACGGTATACACGATCAATTATTTGGATGTGTGCTTCAATCGTCCCATCTTCTGTCTGGTAGAACCTCACAGCAACGAACTTATTTGCTGAAGGGAAATGCCATTGTACCAGAAACTTGGAAATTGAAAATTGCGGTGATTACGTGTAATTTATTTCCTTTTAACGAGCCAAAAA]

[+] EMBL AK103502             [CCTCGTCCTCTCGCCATGGCCGCACCATCCGCGAGCTCCCGTGCCTCCGCGATCTAGCGCGGCGCGGTGGCTCTCGCACCCCCGGCGTCGACGGAGCGCGGAGGAAGGCGGGCCTCCGTACAGAGGCAGTCGAGGGGCACGGGATTTAGGGGAGAGGGGTTGGGGGGATGGGGAGGAAGCCTGATCCGTCGAAGCCACACTACGGTGGCGGCGCCTCGCCGAGGGCAGCGAGGAGGACGCAGCCGTCGCCGGTTTTCCTGGGAACGGCGCTGTTCGTCCTAGGGTTTGTGTCCCTCTTCACGGGACACATCGTTACGGACGCCGACTGGTCCCGGATCCGGAGCCGGTGGCGATCCAAGCAGGTTAGAAATAACGAGCCCATAAATATTTGGAAATCGAGGTATTCCAACTTGTACTATGGATGCAGCAGGAGGAGCGTAAATTTCAGATCTGCTGTGCCGGAGAACAGTTCTACTGGTTACTTGCTGATTGGTACTAGCGGGGGACTAAATCAGCAGCGCATAGG       GATAACAGATGCTGTTGTTGTCGCCCGAATATTGAATGCCACACTTGTTGTACCTGAGTTAGATCACCACTCATTCTGGAAGGATGATAGCGACTTCTCTGACATTTTTGACGTGGACTGGTTCATCTCTTACCTATCAAAGGATGTAACTATTGTCAAAAGAATCCCTTATGAGGTGATGATGTCAATGGATAAACTCCCATGGACCATGCGTGCGCCTA GGAAATCCATG CCT GATTTTTACATTGATGAAGTTTTGCCTATCCTTATGCGAAGGCGAGCTTTGCAGCTAACAAAGTTTGATTATC GGCTCACTAACGAGCTTGATGAAGAATTGCAGAAGTTACGCTGCCGAGT AAATTTCCATGCATTAAGATTTACAAATTCCATACAAACTCTAGGTGAGAAATTGGTGCGCAAGCTGAGGAGCATGAGCTCACGATACGTTGCCGTTCACTTGAGG TTGAGCCTGACATGCTTGCATTTTCTGGTTGTTACTATGGTGGTGGTGATAAAGAACGGAGGGAGTTAGGTGAAATTAGGAAAAGATGGGATACACTACCTGTAAGACTCTGAAACTTGGTGAGCTTAGGATCTGGATATATTTTTGTCGGTATTGCACTTCCTTTTTGTGGATTATTTCTTTTGCACTGATAAGGATGTGTTGGGTCAGATTTCCCTTAAAAACTATTGAGTGATAATGGCTGCTGTTAGTTCTGAGTGTCCATGTATTCTTTTGATCAATTAGTACCGATGGATCAATATTTGAATGATGAAATGATTTAGACTGATTCCTAGCAGGAGTTGAGCGCTGAGGATGAGCGCAGTAGGGGCAAATGTCCACTGACTCCTCAAGAAATTGGTTTGATGCTCCGAGCTCTTGGTTTTAGCAATGACACGTACCTGTATGTTGCTTCTGGAGAAATATATGGGGGAGAAGAAACTCTCCAGCCTCTGAGGGATCTCTTTCCAAACTACTACACCAAAGAAATGCTTGCTGGGAATGATTTGAAACCGTTCCTTCCGTTCTCTTCAAGATTGGCTGCAATTGATTTCATCGTATGTGACGGGAGTGATGTTTTTGTTACAAACAATAATGGAAACATGGCCAAGGTTTTAGCTGGACGAAGGCGATACATGGGCCACAAGAGAACCATTCGCCCAAATGCTAAAAAACTCAACTTACTATTTAAGAGACGGAAACAGATGGGATGGGATATATTTTCACAGAAGGTAAAGAAAGTGCAGAGGGGACTAATGGGAGAACCGGATGATATCAGACCAGGAAGAGATGATTTCAATGAATTTCCATCATCTTGCATCTGCCAAAGAATACCAGTCAATAGATCAGTCACAGCGCGAGCTGAAAACTTGTGAGCTCTAGTGTAGTGAGGCAGACAACTTGAGAACGGAGAATGCTGG GTGA TTGAGCACGTCCCTTG CTGCACTGGGGAAAATACATGTTTGTTAAGCAAAGAAAACAGGGATGTAAACCCAATCAGACAGAAGCAGACGTGGTGGATAAATACTCTTACCGGCTTTAACTCATGGCACTCTGGTAGTCTGGTGGTTCAGACCCAGCAGAACTGGTTAGTGTGCAGCGATGAC AGACA AACTGCTGATTTGCAGCTTCAGTTTGGTTCCACTAATTGTTAAAACTGTGGTAAAGAATCTGCCACGATAATTGTAGTCATTAGCTCGATATGCTATCCCTGTAAATTGTACGGTATACACGATCAATTATTTGGATGTGTGCTTCAATCGTCCCATCTTCTGTCTGGTAGAACCTCACAGCAACGAACTTATTTGCTGAAGGGAAATGCCATTGTACCAGAAACTTGGAAATTGAAAATTGCGGTGATTACGTGTAATTTATTTCCTT               ]
[+] EMBL CF303514             [                                                                                                                                                                          GGGAGGAAGCCTGATCCGTCGAAGCC CACTACGGTGGCGGCGCCTCGCCGAGGGCAGCGAGGAGGACGCAGCCGTCGCCGGTTTTCCTGGGAACGGCGCTGTTCGTCCTAGGGTTTGTGTCCCTCTTCACGGGACACATCGTTACGGACGCCGACTGGTCCCGGATCCGGAGCCGGTGGCGATCCAAGCAGGTTAGAAATAACGAGCCCATAAATATTTGGAAATCGAGGTATTCCAACTTGTACTATGGATGCAGCAGGAGGAGCGTAAATTTCAGATCTGCTGTGCCGGAGAACAGTACTTCTGGTTACTTGCTGATTGGTACTAGCGGGGGACTAAATCAGCAGCGCATAGGGTTTCCAGATAACAGATGCTGTTGTTGTCGCCCGAATATTGAATGCCACACTTGTTGTACCTGAGTTAGATCACCACTCATTCTGGAAGGATGATAGCGACTTCTCTGACATTTTTGACGTGGACTGGTTCATCTCTTACCTATCAAAGGATGTAACTATTGTCAAAAGAATCCCTTATGAGGTGATGATGTCAATGGATAAACTCCCATGGACCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU056590             [                                                                                                                                                                                                                                                                                                                                                               GATCCAAGCAGGTTAGAAATAACGAGCCCATAAATATTTGGAAATCGAGGTATTCCAACTTGTACTATGGATGCAGCAGGAGGAGCGTAAATTTCAGATCTGCTGTGCCGGAGAACAGTTCTACTGGTTACTTGCTGATTGGTACTAGCGGGGGACTAAATCAGCAGCGCATAGG       GATAACAGATGCTGTTGTTGTCGCCCGAATATTGAATGCCACACTTGTTGTACCTGAGTTAGATCACCACTCATTCTGGAAGGATGATAGCGACTTCTCTGACATTTTTGACGTGGACTGGTTCATCTCTTACCTATCAAAGGATGTAACTATTGTCAAAAGAATCCCTTATGAGGTGATGATGTCAATGGATAAACTCCCATGGACCATGCGTGCGCCTAGGGAAATCCATGNCCTGGATTTTTACATTGATGAAGTTTTGCCTATCCTTATGCGAAGGCGAGCTTTGCAGCTAACAAAGTTTGATTATCGGGGTCACGAACGAGCTTGATGAAGAATTGCAGAAGTTACGCTGCCGAGTAAAATTTCCATGCATTAAGATTTACAAATTCCATACAAANTCTAGGTGAGAAATTGGTGCGCAA CTGAGGNGCATGAGCTCACcga                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CF305570             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AGATCACCACTCATTCTGGAAGGATGATAGCGACTTCTCTGACATTTTTGACGTGGACTGGTTCATCTCTTACCTATCAAAGGATGTAACTATTGTCAAAAGAATCCCTTATGAGGTGATGATGTCAATGGATAAACTCCCATGGACCATGCGTGCGCCTA GGAAATCCATG CCT GATTTTTACATTGATGAAGTTTTGCCTATCCTTATGCGAAG    GCTTTGCAGCTAACAAAGTTTGATTATC GGCTCACTAACGAGCTTGATGAAGAATTGCAGAAGTTACGCTGCCGAGT AAATTTCCATGCATTAAGATTTACAAATTCCATACAAACTCTAGGTGAGAAATTGGTGCGCAAGCTGAGGAGCATGAGCTCACGATACGTTGCCGTTCACTTGAGGTTTGAGCCTGACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BI810405             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      gagGAACGGAGAATGCTGGTGTGATTTGAGCACGTCCCTTGTCTGCACTGGGGAAAATACAAGTTTGTTAAGCAAAGAAAGCAGGGATGTAAACCC ATCAGACAGAAGCAGACGTGGTGGATAAATACTCTTACCGGCTTTAACTCATGGCACTCTGGTAGTCTGGTGGTTCAGACCCAGCAGAACTGGTTAGTGTGCAGCGATGACAAGACACAACTGCTGATTTGCAGCTTCAGTTTGGTTCCACTAATTGTTAAAACTGTGGTAAAGAATCTGCCACGATAATTGTAGTCATTAGCTCGATATGCTATCCCTGTAAATTGTACGGTATACACGATCAATTATTTGGATGTGTGCTTCAATCGTCCCATCTTCTGTCTGGTAGAACCTCACAGCAACGAACTTATTTGCTGAAGGGAAATGCCATTGTACCAGAAACTTGGAAATTGAAAATTGCGGTGATTACGTGTAATTTATTTCCTTTTAACGAGCCAAAAA]




>consensus_11939#0
CCTCGTCCTCTCGCCATGGCCGCACCATCCGCGAGCTCCCGTGCCTCCGCGATCTAGCGC
GGCGCGGTGGCTCTCGCACCCCCGGCGTCGACGGAGCGCGGAGGAAGGCGGGCCTCCGTA
CAGAGGCAGTCGAGGGGCACGGGATTTAGGGGAGAGGGGTTGGGGGGATGGGGAGGAAGC
CTGATCCGTCGAAGCCACACTACGGTGGCGGCGCCTCGCCGAGGGCAGCGAGGAGGACGC
AGCCGTCGCCGGTTTTCCTGGGAACGGCGCTGTTCGTCCTAGGGTTTGTGTCCCTCTTCA
CGGGACACATCGTTACGGACGCCGACTGGTCCCGGATCCGGAGCCGGTGGCGATCCAAGC
AGGTTAGAAATAACGAGCCCATAAATATTTGGAAATCGAGGTATTCCAACTTGTACTATG
GATGCAGCAGGAGGAGCGTAAATTTCAGATCTGCTGTGCCGGAGAACAGTTCTACTGGTT
ACTTGCTGATTGGTACTAGCGGGGGACTAAATCAGCAGCGCATAGGGATAACAGATGCTG
TTGTTGTCGCCCGAATATTGAATGCCACACTTGTTGTACCTGAGTTAGATCACCACTCAT
TCTGGAAGGATGATAGCGACTTCTCTGACATTTTTGACGTGGACTGGTTCATCTCTTACC
TATCAAAGGATGTAACTATTGTCAAAAGAATCCCTTATGAGGTGATGATGTCAATGGATA
AACTCCCATGGACCATGCGTGCGCCTAGGAAATCCATGCCTGATTTTTACATTGATGAAG
TTTTGCCTATCCTTATGCGAAGGCGAGCTTTGCAGCTAACAAAGTTTGATTATCGGCTCA
CTAACGAGCTTGATGAAGAATTGCAGAAGTTACGCTGCCGAGTAAATTTCCATGCATTAA
GATTTACAAATTCCATACAAACTCTAGGTGAGAAATTGGTGCGCAAGCTGAGGAGCATGA
GCTCACGATACGTTGCCGTTCACTTGAGGTTGAGCCTGACATGCTTGCATTTTCTGGTTG
TTACTATGGTGGTGGTGATAAAGAACGGAGGGAGTTAGGTGAAATTAGGAAAAGATGGGA
TACACTACCTGTAAGACTCTGAAACTTGGTGAGCTTAGGATCTGGATATATTTTTGTCGG
TATTGCACTTCCTTTTTGTGGATTATTTCTTTTGCACTGATAAGGATGTGTTGGGTCAGA
TTTCCCTTAAAAACTATTGAGTGATAATGGCTGCTGTTAGTTCTGAGTGTCCATGTATTC
TTTTGATCAATTAGTACCGATGGATCAATATTTGAATGATGAAATGATTTAGACTGATTC
CTAGCAGGAGTTGAGCGCTGAGGATGAGCGCAGTAGGGGCAAATGTCCACTGACTCCTCA
AGAAATTGGTTTGATGCTCCGAGCTCTTGGTTTTAGCAATGACACGTACCTGTATGTTGC
TTCTGGAGAAATATATGGGGGAGAAGAAACTCTCCAGCCTCTGAGGGATCTCTTTCCAAA
CTACTACACCAAAGAAATGCTTGCTGGGAATGATTTGAAACCGTTCCTTCCGTTCTCTTC
AAGATTGGCTGCAATTGATTTCATCGTATGTGACGGGAGTGATGTTTTTGTTACAAACAA
TAATGGAAACATGGCCAAGGTTTTAGCTGGACGAAGGCGATACATGGGCCACAAGAGAAC
CATTCGCCCAAATGCTAAAAAACTCAACTTACTATTTAAGAGACGGAAACAGATGGGATG
GGATATATTTTCACAGAAGGTAAAGAAAGTGCAGAGGGGACTAATGGGAGAACCGGATGA
TATCAGACCAGGAAGAGATGATTTCAATGAATTTCCATCATCTTGCATCTGCCAAAGAAT
ACCAGTCAATAGATCAGTCACAGCGCGAGCTGAAAACTTGTGAGCTCTAGTGTAGTGAGG
CAGACAACTTGAGAACGGAGAATGCTGGGTGATTGAGCACGTCCCTTGCTGCACTGGGGA
AAATACATGTTTGTTAAGCAAAGAAAACAGGGATGTAAACCCAATCAGACAGAAGCAGAC
GTGGTGGATAAATACTCTTACCGGCTTTAACTCATGGCACTCTGGTAGTCTGGTGGTTCA
GACCCAGCAGAACTGGTTAGTGTGCAGCGATGACAGACAAACTGCTGATTTGCAGCTTCA
GTTTGGTTCCACTAATTGTTAAAACTGTGGTAAAGAATCTGCCACGATAATTGTAGTCAT
TAGCTCGATATGCTATCCCTGTAAATTGTACGGTATACACGATCAATTATTTGGATGTGT
GCTTCAATCGTCCCATCTTCTGTCTGGTAGAACCTCACAGCAACGAACTTATTTGCTGAA
GGGAAATGCCATTGTACCAGAAACTTGGAAATTGAAAATTGCGGTGATTACGTGTAATTT
ATTTCCTTTTAACGAGCCAAAAA

consensusID : consensus_11939#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 951
fasta sequence

                              [TCTAAATGTAAAGTATAGTTGAATGTAAACAGATAAGCCTTCAGGTATGATGCAATCCACCTGATTATACTATTTTTCTCCCTAGTGCTACGTGTGACCCTTTTTCATGTATTTTTCGTATGTGTCTATCGTTGGTGGTTTTGTTTCATCTAATGGTCATTCATCTCTGTCTACTTGTAGGCGATACATGGGCCACAAGAGAACCATTCGCCCAAATGCTAAAAAACTCAACTTACTATTTAAGAGACGGAAACAGATGGGATGGGATATATTTTCACAGAAGGTAAAGAAAGTGCAGAGGGGACTAATGGGAGAACCGGATGATATCAGACCAGGAAGAGATGATTTCAATGAATTTCCATCATCTTGCATCTGCCAAAGAATACCAGTCAATAGATCAGTCACAGCGCGAGCTGAAAACTTGTGAGCTCTAGTGTAGTGAGGCAGACAACTTGAGAACGGAGAATGCTGGGTGATTGAGCACGTCCCTTGCTGCACTGGGGAAAATACATGTTTGTTAAGCAAAGAAAACAGGGATGTAAACCCAATCAGACAGAAGCAGACGTGGTGGATAAATACTCTTACCGGCTTTAACTCATGGCACTCTGGTAGTCTGGTGGTTCAGACCCAGCAGAACTGGTTAGTGTGCAGCGATGACAGACAAACTGCTGATTTGCAGCTTCAGTTTGGTTCCACTAATTGTTAAAACTGTGGTAAAGAATCTGCCACGATAATTGTAGTCATTAGCTCGATATGCTATCCCTGTAAATTGTACGGTATACACGATCAATTATTTGGATGTGTGCTTCAATCGTCCCATCTTCTGTCTGGTAGAACCTCACAGCAACGAACTTATTTGCTGAAGGGAAATGCCATTGTACCAGAAACTTGGAAATTGAAAATTGCGGTGATTACGTGTAATTTATTTCCTTTTAACGAGCCAGTCTGGTT]

[+] EMBL AK061936             [TCTAAATGTAAAGTATAGTTGAATGTAAACAGATAAGCCTTCAGGTATGATGCAATCCACCTGATTATACTATTTTTCTCCCTAGTGCTACGTGTGACCCTTTTTCATGTATTTTTCGTATGTGTCTATCGTTGGTGGTTTTGTTTCATCTAATGGTCATTCATCTCTGTCTACTTGTAGGCGATACATGGGCCACAAGAGAACCATTCGCCCAAATGCTAAAAAACTCAACTTACTATTTAAGAGACGGAAACAGATGGGATGGGATATATTTTCACAGAAGGTAAAGAAAGTGCAGAGGGGACTAATGGGAGAACCGGATGATATCAGACCAGGAAGAGATGATTTCAATGAATTTCCATCATCTTGCATCTGCCAAAGAATACCAGTCAATAGATCAGTCACAGCGCGAGCTGAAAACTTGTGAGCTCTAGTGTAGTGAGGCAGACAACTTGAGAACGGAGAATGCTGGGTGATTGAGCACGTCCCTTGCTGCACTGGGGAAAATACATGTTTGTTAAGCAAAGAAAACAGGGATGTAAACCCAATCAGACAGAAGCAGACGTGGTGGATAAATACTCTTACCGGCTTTAACTCATGGCACTCTGGTAGTCTGGTGGTTCAGACCCAGCAGAACTGGTTAGTGTGCAGCGATGACAGACAAACTGCTGATTTGCAGCTTCAGTTTGGTTCCACTAATTGTTAAAACTGTGGTAAAGAATCTGCCACGATAATTGTAGTCATTAGCTCGATATGCTATCCCTGTAAATTGTACGGTATACACGATCAATTATTTGGATGTGTGCTTCAATCGTCCCATCTTCTGTCTGGTAGAACCTCACAGCAACGAACTTATTTGCTGAAGGGAAATGCCATTGTACCAGAAACTTGGAAATTGAAAATTGCGGTGATTACGTGTAATTTATTTCCTTTTAACGAGCCAGTCTGGTT]




>consensus_11939#1
TCTAAATGTAAAGTATAGTTGAATGTAAACAGATAAGCCTTCAGGTATGATGCAATCCAC
CTGATTATACTATTTTTCTCCCTAGTGCTACGTGTGACCCTTTTTCATGTATTTTTCGTA
TGTGTCTATCGTTGGTGGTTTTGTTTCATCTAATGGTCATTCATCTCTGTCTACTTGTAG
GCGATACATGGGCCACAAGAGAACCATTCGCCCAAATGCTAAAAAACTCAACTTACTATT
TAAGAGACGGAAACAGATGGGATGGGATATATTTTCACAGAAGGTAAAGAAAGTGCAGAG
GGGACTAATGGGAGAACCGGATGATATCAGACCAGGAAGAGATGATTTCAATGAATTTCC
ATCATCTTGCATCTGCCAAAGAATACCAGTCAATAGATCAGTCACAGCGCGAGCTGAAAA
CTTGTGAGCTCTAGTGTAGTGAGGCAGACAACTTGAGAACGGAGAATGCTGGGTGATTGA
GCACGTCCCTTGCTGCACTGGGGAAAATACATGTTTGTTAAGCAAAGAAAACAGGGATGT
AAACCCAATCAGACAGAAGCAGACGTGGTGGATAAATACTCTTACCGGCTTTAACTCATG
GCACTCTGGTAGTCTGGTGGTTCAGACCCAGCAGAACTGGTTAGTGTGCAGCGATGACAG
ACAAACTGCTGATTTGCAGCTTCAGTTTGGTTCCACTAATTGTTAAAACTGTGGTAAAGA
ATCTGCCACGATAATTGTAGTCATTAGCTCGATATGCTATCCCTGTAAATTGTACGGTAT
ACACGATCAATTATTTGGATGTGTGCTTCAATCGTCCCATCTTCTGTCTGGTAGAACCTC
ACAGCAACGAACTTATTTGCTGAAGGGAAATGCCATTGTACCAGAAACTTGGAAATTGAA
AATTGCGGTGATTACGTGTAATTTATTTCCTTTTAACGAGCCAGTCTGGTT

consensusID : consensus_11939#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 645
fasta sequence

                              [ATCCGTCGAAGCCACACTACGGTGGCGGCGCCTCGCCGAGGGCAGCGAGGAGGACGCAGCCGTCGCCGGTTTTCCTGGGAACGGCGCTGTTCGTCCTAGGGTTTGTGTCCCTCTTCACGGGACACATCGTTACGGACGCCGACTGGTCCCGGATCCGGAGCCGGTGGCGATCCAAGCAGGTTAGAAATAACGAGCCCATAAATATTTGGAAATCGAGGTATTCCAACTTGTACTATGGATGCAGCAGGAGGAGCGTAAATTTCAGATCTGCTGTGCCGGAGAACAGTTCTACTGGTTACTTGCTGATTGGTACTAGCGGGGGACTAAATCAGCAGCGCATAGGGGTACAACTGTATTTCAACTTTTTATTGCGTTGCTTTGTATTATCCATTGTATTACCATTACGATCTTCAGTTTCCAGATAACAGATGCTGTTGTTGTCGCCCGAATATTGAATGCCACACTTGTTGTACCTGAGTTAGATCACCACTCATTCTGGAAGGATGATAGCGACTTCTCTGACATTTTTGACGTGGACTGGTTCATCTCTTACCTATCAAAGGATGTAACTATTGTCAAAAGAATCCCTTATGAGGTGATGATGTCAATGGATAAACTCCCATGGACCATGCGTGCGCCTAGGAA]

[+] EMBL CF306476             [ATCCGTCGAAGCCACACTACGGTGGCGGCGCCTCGCCGAGGGCAGCGAGGAGGACGCAGCCGTCGCCGGTTTTCCTGGGAACGGCGCTGTTCGTCCTAGGGTTTGTGTCCCTCTTCACGGGACACATCGTTACGGACGCCGACTGGTCCCGGATCCGGAGCCGGTGGCGATCCAAGCAGGTTAGAAATAACGAGCCCATAAATATTTGGAAATCGAGGTATTCCAACTTGTACTATGGATGCAGCAGGAGGAGCGTAAATTTCAGATCTGCTGTGCCGGAGAACAGTTCTACTGGTTACTTGCTGATTGGTACTAGCGGGGGACTAAATCAGCAGCGCATAGGGGTACAACTGTATTTCAACTTTTTATTGCGTTGCTTTGTATTATCCATTGTATTACCATTACGATCTTCAGTTTCCAGATAACAGATGCTGTTGTTGTCGCCCGAATATTGAATGCCACACTTGTTGTACCTGAGTTAGATCACCACTCATTCTGGAAGGATGATAGCGACTTCTCTGACATTTTTGACGTGGACTGGTTCATCTCTTACCTATCAAAGGATGTAACTATTGTCAAAAGAATCCCTTATGAGGTGATGATGTCAATGGATAAACTCCCATGGACCATGCGTGCGCCTAGGAA]




>consensus_11939#2
ATCCGTCGAAGCCACACTACGGTGGCGGCGCCTCGCCGAGGGCAGCGAGGAGGACGCAGC
CGTCGCCGGTTTTCCTGGGAACGGCGCTGTTCGTCCTAGGGTTTGTGTCCCTCTTCACGG
GACACATCGTTACGGACGCCGACTGGTCCCGGATCCGGAGCCGGTGGCGATCCAAGCAGG
TTAGAAATAACGAGCCCATAAATATTTGGAAATCGAGGTATTCCAACTTGTACTATGGAT
GCAGCAGGAGGAGCGTAAATTTCAGATCTGCTGTGCCGGAGAACAGTTCTACTGGTTACT
TGCTGATTGGTACTAGCGGGGGACTAAATCAGCAGCGCATAGGGGTACAACTGTATTTCA
ACTTTTTATTGCGTTGCTTTGTATTATCCATTGTATTACCATTACGATCTTCAGTTTCCA
GATAACAGATGCTGTTGTTGTCGCCCGAATATTGAATGCCACACTTGTTGTACCTGAGTT
AGATCACCACTCATTCTGGAAGGATGATAGCGACTTCTCTGACATTTTTGACGTGGACTG
GTTCATCTCTTACCTATCAAAGGATGTAACTATTGTCAAAAGAATCCCTTATGAGGTGAT
GATGTCAATGGATAAACTCCCATGGACCATGCGTGCGCCTAGGAA

consensusID : consensus_11939#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 290
fasta sequence

                              [GACAAACTGCTGATTTGCNGCTTCAGTTTGGTTCCACTAATTGTTAAAACTGTGGTAAAGAATCTGCCNCGATAATTGTAGTCATTAGCTCGATATGCTATCCCTGTAAATTGTACGGTATACNCGATCAATTATTTGGATGTGTGCTTCAATCGTCCCATCTTCTGTCTGGTNGAACCTCACAGCAACGAACTTATTTGCTGAAGGGAAATGCCATTGTACCNGAAACTTGGAAATTGAAAATTGCGGTGATTACGTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU056591             [GACAAACTGCTGATTTGCNGCTTCAGTTTGGTTCCACTAATTGTTAAAACTGTGGTAAAGAATCTGCCNCGATAATTGTAGTCATTAGCTCGATATGCTATCCCTGTAAATTGTACGGTATACNCGATCAATTATTTGGATGTGTGCTTCAATCGTCCCATCTTCTGTCTGGTNGAACCTCACAGCAACGAACTTATTTGCTGAAGGGAAATGCCATTGTACCNGAAACTTGGAAATTGAAAATTGCGGTGATTACGTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_11939#3
GACAAACTGCTGATTTGCNGCTTCAGTTTGGTTCCACTAATTGTTAAAACTGTGGTAAAG
AATCTGCCNCGATAATTGTAGTCATTAGCTCGATATGCTATCCCTGTAAATTGTACGGTA
TACNCGATCAATTATTTGGATGTGTGCTTCAATCGTCCCATCTTCTGTCTGGTNGAACCT
CACAGCAACGAACTTATTTGCTGAAGGGAAATGCCATTGTACCNGAAACTTGGAAATTGA
AAATTGCGGTGATTACGTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_11939#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 287
fasta sequence

                              [AGGAAAAGATGGGATACACTACCTGAGTTGAGCGCTGAGGATGAGCGCAGTAGGGGCAAATGTCCACTGACTCCTCAAGAAATTGGTTTGATGCTCCGAGCTCTTGGTTTTAGCAATGACACGTACCTGTATGTTGCTTCTGGAGAAATATATGGGGGAGAAGAAACTCTCCAGCCTCTGAGGGATCTCTTTCCAAACTACTACACCAAAGAAATGCTTGCTGGGAATGATTTGAAACCGTTCCTTCCGTTCTCTTCAAGATTGGCTGCAATTGATTTCATCGTATG]

[+] EMBL CA753567             [AGGAAAAGATGGGATACACTACCTGAGTTGAGCGCTGAGGATGAGCGCAGTAGGGGCAAATGTCCACTGACTCCTCAAGAAATTGGTTTGATGCTCCGAGCTCTTGGTTTTAGCAATGACACGTACCTGTATGTTGCTTCTGGAGAAATATATGGGGGAGAAGAAACTCTCCAGCCTCTGAGGGATCTCTTTCCAAACTACTACACCAAAGAAATGCTTGCTGGGAATGATTTGAAACCGTTCCTTCCGTTCTCTTCAAGATTGGCTGCAATTGATTTCATCGTATG]




>consensus_11939#4
AGGAAAAGATGGGATACACTACCTGAGTTGAGCGCTGAGGATGAGCGCAGTAGGGGCAAA
TGTCCACTGACTCCTCAAGAAATTGGTTTGATGCTCCGAGCTCTTGGTTTTAGCAATGAC
ACGTACCTGTATGTTGCTTCTGGAGAAATATATGGGGGAGAAGAAACTCTCCAGCCTCTG
AGGGATCTCTTTCCAAACTACTACACCAAAGAAATGCTTGCTGGGAATGATTTGAAACCG
TTCCTTCCGTTCTCTTCAAGATTGGCTGCAATTGATTTCATCGTATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11939#0      CCTCGTCCTCTCGCCATGGCCGCACCATCCGCGAGCTCCCGTGCCTCCGCGATCTAGCGC 60
consensus_11939#4      ------------------------------------------------------------
consensus_11939#2      ------------------------------------------------------------
consensus_11939#1      ------------------------------------------------------------
consensus_11939#3      ------------------------------------------------------------
                                                                                   

consensus_11939#0      GGCGCGGTGGCTCTCGCACCCCCGGCGTCGACGGAGCGCGGAGGAAGGCGGGCCTCCGTA 120
consensus_11939#4      ------------------------------------------------------------
consensus_11939#2      ------------------------------------------------------------
consensus_11939#1      ------------------------------------------------------------
consensus_11939#3      ------------------------------------------------------------
                                                                                   

consensus_11939#0      CAGAGGCAGTCGAGGGGCACGGGATTTAGGGGAGAGGGGTTGGGGGGATGGGGAGGAAGC 180
consensus_11939#4      ------------------------------------------------------------
consensus_11939#2      ------------------------------------------------------------
consensus_11939#1      ------------------------------------------------------------
consensus_11939#3      ------------------------------------------------------------
                                                                                   

consensus_11939#0      CTGATCCGTCGAAGCCACACTACGGTGGCGGCGCCTCGCCGAGGGCAGCGAGGAGGACGC 240
consensus_11939#4      ------------------------------------------------------------
consensus_11939#2      ------------------------------------------------------------
consensus_11939#1      ------------------------------------------------------------
consensus_11939#3      ------------------------------------------------------------
                                                                                   

consensus_11939#0      AGCCGTCGCCGGTTTTCCTGGGAACGGCGCTGTTCGTCCTAGGGTTTGTGTCCCTCTTCA 300
consensus_11939#4      ------------------------------------------------------------
consensus_11939#2      ------------------------------------------------------------
consensus_11939#1      ------------------------------------------------------------
consensus_11939#3      ------------------------------------------------------------
                                                                                   

consensus_11939#0      CGGGACACATCGTTACGGACGCCGACTGGTCCCGGATCCGGAGCCGGTGGCGATCCAAGC 360
consensus_11939#4      ------------------------------------------------------------
consensus_11939#2      ------------------------------------------------------------
consensus_11939#1      ------------------------------------------------------------
consensus_11939#3      ------------------------------------------------------------
                                                                                   

consensus_11939#0      AGGTTAGAAATAACGAGCCCATAAATATTTGGAAATCGAGGTATTCCAACTTGTACTATG 420
consensus_11939#4      ------------------------------------------------------------
consensus_11939#2      ------------------------------------------------------------
consensus_11939#1      ------------------------------------------------------------
consensus_11939#3      ------------------------------------------------------------
                                                                                   

consensus_11939#0      GATGCAGCAGGAGGAGCGTAAATTTCAGATCTGCTGTGCCGGAGAACAGTTCTACTGGTT 480
consensus_11939#4      ------------------------------------------------------------
consensus_11939#2      ------------------------------------------------------------
consensus_11939#1      ------------------------------------------------------------
consensus_11939#3      ------------------------------------------------------------
                                                                                   

consensus_11939#0      ACTTGCTGATTGGTACTAGCGGGGGACTAAATCAGCAGCGCATAGGGATAACAGATGCTG 540
consensus_11939#4      ------------------------------------------------------------
consensus_11939#2      ------------------------------------------------------------
consensus_11939#1      ------------------------------------------------------------
consensus_11939#3      ------------------------------------------------------------
                                                                                   

consensus_11939#0      TTGTTGTCGCCCGAATATTGAATGCCACACTTGTTGTACCTGAGTTAGATCACCACTCAT 600
consensus_11939#4      ------------------------------------------------------------
consensus_11939#2      ------------------------------------------------------------
consensus_11939#1      ------------------------------------------------------------
consensus_11939#3      ------------------------------------------------------------
                                                                                   

consensus_11939#0      TCTGGAAGGATGATAGCGACTTCTCTGACATTTTTGACGTGGACTGGTTCATCTCTTACC 660
consensus_11939#4      ------------------------------------------------------------
consensus_11939#2      ------------------------------------------------------------
consensus_11939#1      ------------------------------------------------------------
consensus_11939#3      ------------------------------------------------------------
                                                                                   

consensus_11939#0      TATCAAAGGATGTAACTATTGTCAAAAGAATCCCTTATGAGGTGATGATGTCAATGGATA 720
consensus_11939#4      ------------------------------------------------------------
consensus_11939#2      ------------------------------------------------------------
consensus_11939#1      --------TCTAAATGTAAAGTATAGTTGAATGTAAACAGATAAGCCTTCAGGTATGATG 52
consensus_11939#3      ------------------------------------------------------------
                                                                                   

consensus_11939#0      AACTCCCATGGACCATGCGTGCGCCTAGGAAATCCATGCCTGATTTTTACATTGATGAAG 780
consensus_11939#4      ------------------------------------------------------------
consensus_11939#2      ------------------------------------------------------------
consensus_11939#1      CAATCCACCTGATTATACTATTTTTCTCCCTAGTGCTACGTGTGACCCTTTTTCATGTAT 112
consensus_11939#3      ------------------------------------------------------------
                                                                                   

consensus_11939#0      TTTTGCCTATCCTTATGCGAAGGCGAGCTTTGCAGCTAACAAAGTTTGATTATCGGCTCA 840
consensus_11939#4      ------------------------------------------------------------
consensus_11939#2      ------------------------------------------------------------
consensus_11939#1      TTTTCGTATGTGTCTATCGTTGGTGGTTTTGTTTCATCTAATGGTCATTCATCTCTGTCT 172
consensus_11939#3      ------------------------------------------------------------
                                                                                   

consensus_11939#0      CTAACGAGCTTGATGAAGAATTGCAGAAGTTACGCTGCCGAGTAAATTTCCATGCATTAA 900
consensus_11939#4      ------------------------------------------------------------
consensus_11939#2      ------------------------------------------------------------
consensus_11939#1      ACTTGTAGGCGATACATGGGCCACAAGAGAACCATTCGCCCAAATGCTAAAAAACTCAAC 232
consensus_11939#3      ------------------------------------------------------------
                                                                                   

consensus_11939#0      GATTTACAAATTCCATACAAACTCTAGGTGAGAAATTGGTGCGCAAGCTGAGGAGCATGA 960
consensus_11939#4      ------------------------------------------------------------
consensus_11939#2      ------------------------------------------------------------
consensus_11939#1      TTACTATTTAAGAGACGGAAACAGATGGGATGGGATATATTTTCACAGAAGGTAAAGAAA 292
consensus_11939#3      ------------------------------------------------------------
                                                                                   

consensus_11939#0      GCTCACGATACGTTGCCGTTCACTTGAGGTTGAGCCTGACATGCTTGCATTTTCTGGTTG 1020
consensus_11939#4      ------------------------------------------------------------
consensus_11939#2      ----------------------------------------------------------AT 2
consensus_11939#1      GTGCAGAGGGGACTAATGGGAGAACCGGATGATATCAGACCAGGAAGAGATGATTTCAAT 352
consensus_11939#3      ------------------------------------------------------------
                                                                                   

consensus_11939#0      TTACTATGGTGGTGGTGATAAAGAACGGAGGGAGTTAGGTGAAATTAGGAAAAGATGGGA 1080
consensus_11939#4      ------------------------------------------------------------
consensus_11939#2      CCGTCGAAGCCACACTACGGTGGCGGCGCCTCGCCGAGGGCAGCGAGGAGGACGCAGCCG 62
consensus_11939#1      GAATTTCCATCATCTTGCATCTGCCAAAGAATACCAGTCAATAGATCAGTCACAGCGCGA 412
consensus_11939#3      ------------------------------------------------------------
                                                                                   

consensus_11939#0      TACACTACCTGTAAGACTCTGAAACTTGGTGAGCTTAGGATCTGGATATATTTTTGTCGG 1140
consensus_11939#4      ------------------------------------------------------------
consensus_11939#2      TCGCCGGTTTTCCTGGGAACGGCGCTGTTCGTCCTAGGGTTTGTGTCCCTCTTCACGGGA 122
consensus_11939#1      GCTGAAAACTTGTGAGCTCTAGTGTAGTGAGGCAGACAACTTGAGAACGGAGAATGCTGG 472
consensus_11939#3      ------------------------------------------------------------
                                                                                   

consensus_11939#0      TATTGCACTTCCTTTTTGTGGATTATTTCTTTTGCACTGATAAGGATGTGTTGGGTCAGA 1200
consensus_11939#4      ------------------------------------------------------------
consensus_11939#2      CACATCGTTACGGACGCCGACTGGTCCCGGATCCGGAGCCGGTGGCGATCCAAGCAGGTT 182
consensus_11939#1      GTGATTGAGCACGTCCCTTGCTGCACTGGGGAAAATACATGTTTGTTAAGCAAAGAAAAC 532
consensus_11939#3      ------------------------------------------------------------
                                                                                   

consensus_11939#0      TTTCCCTTAAAAACTATTGAGTGATAATGGCTGCTGTTAGTTCTGAGTGTCCATGTATTC 1260
consensus_11939#4      ------------------------------------------------------------
consensus_11939#2      AGAAATAACGAGCCCATAAATATTTGGAAATCGAGGTATTCCAACTTGTACTATGGATGC 242
consensus_11939#1      AGGGATGTAAACCCAATCAGACAGAAGCAGACGTGGTGGATAAATACTCTTACCGGCTTT 592
consensus_11939#3      ------------------------------------------------------------
                                                                                   

consensus_11939#0      TTTTGATCAATTAGTACCGATGGATCAATATTTGAATGATGAAATGATTTAGACTGATTC 1320
consensus_11939#4      -----------------------------------AGGAAAAGATGGGATACACTACCT- 24
consensus_11939#2      AGCAGGAGGAGCGTAAATTTCAGATCTGCTGTGCCGGAGAACAGTTCTACTGGTTACTTG 302
consensus_11939#1      AACTCATGGCACTCTGGTAGTCTGGTGGTTCAGACCCAGCAGAACTGGTTAGTGTGCAGC 652
consensus_11939#3      ------------------------------------------------------------
                                                                                   

consensus_11939#0      CTAGCAGG----AGTTGAGCGCTGAGGATG-AGCGCAGTAGGG-GCAAATGTCCACTGAC 1374
consensus_11939#4      -------G----AGTTGAGCGCTGAGGATG-AGCGCAGTAGGG-GCAAATGTCCACTGAC 71
consensus_11939#2      CTGATTGGTACTAGCGGGGGACTAAATCAGCAGCGCATAGGGGTACAACTGTATTTCAAC 362
consensus_11939#1      GATGACAG-----ACAAACTGCTGATTTGCAGCTTCAGTTTGGTTCCACTAATTGTTAAA 707
consensus_11939#3      -------G-----ACAAACTGCTGATTTGCNGCTTCAGTTTGGTTCCACTAATTGTTAAA 48
                              *             ** *          **    **  * * *        * 

consensus_11939#0      TCCTCAAGAAATTGGTTTG-ATGCTCCGAGCTCTTGGTTTTAGCAATGACACGTACCTGT 1433
consensus_11939#4      TCCTCAAGAAATTGGTTTG-ATGCTCCGAGCTCTTGGTTTTAGCAATGACACGTACCTGT 130
consensus_11939#2      TTTTTATTGCGTTGCTTTGTATTATCCATTGTATTACCATTA-CGATCTTCAGTTTCCAG 421
consensus_11939#1      ACTGTGGTAAAG-AATCTGCCACGATAATTGTAGTCATTAGCTCGATATGCTATCCCTGT 766
consensus_11939#3      ACTGTGGTAAAG-AATCTGCCNCGATAATTGTAGTCATTAGCTCGATATGCTATCCCTGT 107
                                      * **            *  *        * **      *  *   

consensus_11939#0      AT----GTTGC-TTCTGGAGAAATATATGGGGGAGAAGAAACTCTC-CAGCCTCTGAG-- 1485
consensus_11939#4      AT----GTTGC-TTCTGGAGAAATATATGGGGGAGAAGAAACTCTC-CAGCCTCTGAG-- 182
consensus_11939#2      ATAACAGATGC-TGTTGTTGTCGCCCGAATATTGAATGCCACACTTGTTGTACCTGAGTT 480
consensus_11939#1      AA----ATTGTACGGTATACACGATCAATTATTTGGATGTGTGCTTCAATCGTCCCATC- 821
consensus_11939#3      AA----ATTGTACGGTATACNCGATCAATTATTTGGATGTGTGCTTCAATCGTCCCATC- 162
                       *       **     *                           **        *  *   

consensus_11939#0      GGATCTCTTTCCAAACTACTACACCAAAGAAATGCTTGCTGGGAAT----GATTTGAAAC 1541
consensus_11939#4      GGATCTCTTTCCAAACTACTACACCAAAGAAATGCTTGCTGGGAAT----GATTTGAAAC 238
consensus_11939#2      AGATCACCACTCATTCTGGAAGGATGATAGCGACTTCTCTGACATTTT-TGACGTGGACT 539
consensus_11939#1      TTCTGTCTGGTAGAACCTCACAGCAACGAACTTATTTGCTGAAGGGAAATGCCATTGTAC 881
consensus_11939#3      TTCTGTCTGGTNGAACCTCACAGCAACGAACTTATTTGCTGAAGGGAAATGCCATTGTAC 222
                          *  *        *                   *  ***         *   *     

consensus_11939#0      CGTTCCTTCCGTTCTCTTCAA--GAT-TGGCTG----CAATTGATTTCATCGTATGTGAC 1594
consensus_11939#4      CGTTCCTTCCGTTCTCTTCAA--GAT-TGGCTG----CAATTGATTTCATCGTATG---- 287
consensus_11939#2      GGTTCATCTCTTACCTATCAAAGGATGTAACTATTGTCAAAAGAATCCCTTATGAGGTGA 599
consensus_11939#1      CAGAAACTTGGAAATTGAAAATTGCGGTGATTACGTGTAATTTATTTCCTTTTAACGAGC 941
consensus_11939#3      CNGAAACTTGGAAATTGAAAATTGCGGTGATTACGTGTAAAAAAAAAAAAAAAAAAAAAA 282
                                          **  *   *   *      **   *                

consensus_11939#0      GGGAGTGATGTTTTTGTTACAAACAATAATGGAAACATGGCCAAGGTTTTAGCTGGACGA 1654
consensus_11939#4      ------------------------------------------------------------
consensus_11939#2      TGATGTCAATGGATAAACTCCCATGGACCATGCGTGCGCCTAGGAA-------------- 645
consensus_11939#1      CAGTCTGGTT-------------------------------------------------- 951
consensus_11939#3      AAAAAAAA---------------------------------------------------- 290
                                                                                   

consensus_11939#0      AGGCGATACATGGGCCACAAGAGAACCATTCGCCCAAATGCTAAAAAACTCAACTTACTA 1714
consensus_11939#4      ------------------------------------------------------------
consensus_11939#2      ------------------------------------------------------------
consensus_11939#1      ------------------------------------------------------------
consensus_11939#3      ------------------------------------------------------------
                                                                                   

consensus_11939#0      TTTAAGAGACGGAAACAGATGGGATGGGATATATTTTCACAGAAGGTAAAGAAAGTGCAG 1774
consensus_11939#4      ------------------------------------------------------------
consensus_11939#2      ------------------------------------------------------------
consensus_11939#1      ------------------------------------------------------------
consensus_11939#3      ------------------------------------------------------------
                                                                                   

consensus_11939#0      AGGGGACTAATGGGAGAACCGGATGATATCAGACCAGGAAGAGATGATTTCAATGAATTT 1834
consensus_11939#4      ------------------------------------------------------------
consensus_11939#2      ------------------------------------------------------------
consensus_11939#1      ------------------------------------------------------------
consensus_11939#3      ------------------------------------------------------------
                                                                                   

consensus_11939#0      CCATCATCTTGCATCTGCCAAAGAATACCAGTCAATAGATCAGTCACAGCGCGAGCTGAA 1894
consensus_11939#4      ------------------------------------------------------------
consensus_11939#2      ------------------------------------------------------------
consensus_11939#1      ------------------------------------------------------------
consensus_11939#3      ------------------------------------------------------------
                                                                                   

consensus_11939#0      AACTTGTGAGCTCTAGTGTAGTGAGGCAGACAACTTGAGAACGGAGAATGCTGGGTGATT 1954
consensus_11939#4      ------------------------------------------------------------
consensus_11939#2      ------------------------------------------------------------
consensus_11939#1      ------------------------------------------------------------
consensus_11939#3      ------------------------------------------------------------
                                                                                   

consensus_11939#0      GAGCACGTCCCTTGCTGCACTGGGGAAAATACATGTTTGTTAAGCAAAGAAAACAGGGAT 2014
consensus_11939#4      ------------------------------------------------------------
consensus_11939#2      ------------------------------------------------------------
consensus_11939#1      ------------------------------------------------------------
consensus_11939#3      ------------------------------------------------------------
                                                                                   

consensus_11939#0      GTAAACCCAATCAGACAGAAGCAGACGTGGTGGATAAATACTCTTACCGGCTTTAACTCA 2074
consensus_11939#4      ------------------------------------------------------------
consensus_11939#2      ------------------------------------------------------------
consensus_11939#1      ------------------------------------------------------------
consensus_11939#3      ------------------------------------------------------------
                                                                                   

consensus_11939#0      TGGCACTCTGGTAGTCTGGTGGTTCAGACCCAGCAGAACTGGTTAGTGTGCAGCGATGAC 2134
consensus_11939#4      ------------------------------------------------------------
consensus_11939#2      ------------------------------------------------------------
consensus_11939#1      ------------------------------------------------------------
consensus_11939#3      ------------------------------------------------------------
                                                                                   

consensus_11939#0      AGACAAACTGCTGATTTGCAGCTTCAGTTTGGTTCCACTAATTGTTAAAACTGTGGTAAA 2194
consensus_11939#4      ------------------------------------------------------------
consensus_11939#2      ------------------------------------------------------------
consensus_11939#1      ------------------------------------------------------------
consensus_11939#3      ------------------------------------------------------------
                                                                                   

consensus_11939#0      GAATCTGCCACGATAATTGTAGTCATTAGCTCGATATGCTATCCCTGTAAATTGTACGGT 2254
consensus_11939#4      ------------------------------------------------------------
consensus_11939#2      ------------------------------------------------------------
consensus_11939#1      ------------------------------------------------------------
consensus_11939#3      ------------------------------------------------------------
                                                                                   

consensus_11939#0      ATACACGATCAATTATTTGGATGTGTGCTTCAATCGTCCCATCTTCTGTCTGGTAGAACC 2314
consensus_11939#4      ------------------------------------------------------------
consensus_11939#2      ------------------------------------------------------------
consensus_11939#1      ------------------------------------------------------------
consensus_11939#3      ------------------------------------------------------------
                                                                                   

consensus_11939#0      TCACAGCAACGAACTTATTTGCTGAAGGGAAATGCCATTGTACCAGAAACTTGGAAATTG 2374
consensus_11939#4      ------------------------------------------------------------
consensus_11939#2      ------------------------------------------------------------
consensus_11939#1      ------------------------------------------------------------
consensus_11939#3      ------------------------------------------------------------
                                                                                   

consensus_11939#0      AAAATTGCGGTGATTACGTGTAATTTATTTCCTTTTAACGAGCCAAAAA 2423
consensus_11939#4      -------------------------------------------------
consensus_11939#2      -------------------------------------------------
consensus_11939#1      -------------------------------------------------
consensus_11939#3      -------------------------------------------------