These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12015#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1473 fasta sequence [CGGCCACTGCTACGGCCCACTCGACCCCGTCTCCAACATCATCCTCAACACCATCTGGTACGACGCCGCGTTCCCGGTCCCCAAGGAGCAGCACCTAGACTTGGACATGATTGGCAGGTGGGCGCTGGTCCGTGCTGAGCGCTATTCCGTTGCTGGCCTCGTCGCTGGCCTCATTGCCTTTGCCGGGGACTACAACCTCTCTGAACTCCAAGCCATCAGGTGCCTCCTCTACGCCAACGGGGACTTTGCCACTGCCATGAGCGTACTGCAGCAAGCACTCCTGAACCAAGAACGTACAATGCTGTCTGACTCCGAGCTGTGCCGCTTCATGGATGTTATGGCTAAGCGCTTGCAGCTGTACAGCGTGATGGCCATTGCTGCTCAGCACCCGAGCGCTGATGGACTACAAGAGTTCCTCATATCTGAGCGCACTCGTGCTATGCTGCCGATGGAGTATCGCAGATTCTCCCGAGAGGATGTGCATTCCGTCATCGAGTCACTGTTACATGAACCACCACCGTCACTTGGGATGCCACCGGAGCTGGTACGTTTGAGCCTGGCGGCAGAACGGACCATTGACCAGTTCCCTGATGCTACCAAGCGCTTCTGGGCTGACATGAGCTCTTTCCACAGCAAGGCGAAGGCCGCATTGGAAAGCTATGTTCTGGAGAACGGGGGCCCTCAGTATGTGATCCATGTCATCTGTGGTGCGAACGAAAGTGTCGCGGACCGCAATGGCCCAGAGCTTAG-CAGGATTAACTGGCCAAGATCGCACAACAAATTTCACTA-TTCCCACA-TTAACTTCTTGGCGAGCCCTACTGGGCCAAGTGCTGTGGGTGTGTTGCCAACCCTTTTCTTTGCAGAGTGCGTAAATCACAATGAAGAAAGCGACCGTGCCAGGAAGAACA-ATTGCTACCCTGTTGTC-GTGCCA-CCAACAAATGCTGAGAAGGTCCGGTGCTTCTACTG-TGAGTATAAAGGCATTAATATCATTCACCCGGCTGATGGGAACTACCA-TGGGTGCGACACAGACTTCGAGAAGATGGCACGCCGGAAGCACGTTTTGACCAATAGCATCGAGAGCGTCTTCAACA-ATGGCCTCTTGGTCTCTAATTTCAGGGGTGCGGTGCAAGAAGATTTCTTCTACTTTGACCATGCCAGGGACCATGCCAAGGGGCCATCATCTTGTTCAGATGGTTAAAAATTCATCACAACATCAGACGTGGTCGCGTCCTAGTTGCTAGTTTAATCTGTTTGTTGTTTATGATTAATGATGATGCTTGCGCAACTGAGTAGCCCAAATTAGCAGGCAGCGACTAAT-TAACTTTGACTCTTATTTATGGTCA-C-TGGTGTAGGTCTGATGGCAGCATTTTAAGTTTGTGTTGATACTGAAATATTGGATGTGTTTTTCTAAAAGTCGCATGCTGGCTACTCTGAAAAAAAAAATGTTTCTATTTTTCTGTTTAAAAAAAAAAA] [+] EMBL AK100083 [CGGCCACTGCTACGGCCCACTCGACCCCGTCTCCAACATCATCCTCAACACCATCTGGTACGACGCCGCGTTCCCGGTCCCCAAGGAGCAGCACCTAGACTTGGACATGATTGGCAGGTGGGCGCTGGTCCGTGCTGAGCGCTATTCCGTTGCTGGCCTCGTCGCTGGCCTCATTGCCTTTGCCGGGGACTACAACCTCTCTGAACTCCAAGCCATCAGGTGCCTCCTCTACGCCAACGGGGACTTTGCCACTGCCATGAGCGTACTGCAGCAAGCACTCCTGAACCAAGAACGTACAATGCTGTCTGACTCCGAGCTGTGCCGCTTCATGGATGTTATGGCTAAGCGCTTGCAGCTGTACAGCGTGATGGCCATTGCTGCTCAGCACCCGAGCGCTGATGGACTACAAGAGTTCCTCATATCTGAGCGCACTCGTGCTATGCTGCCGATGGAGTATCGCAGATTCTCCCGAGAGGATGTGCATTCCGTCATCGAGTCACTGTTACATGAACCACCACCGTCACTTGGGATGCCACCGGAGCTGGTACGTTTGAGCCTGGCGGCAGAACGGACCATTGACCAGTTCCCTGATGCTACCAAGCGCTTCTGGGCTGACATGAGCTCTTTCCACAGCAAGGCGAAGGCCGCATTGGAAAGCTATGTTCTGGAGAACGGGGGCCCTCAGTATGTGATCCATGTCATCTGTGGTGCGAACGAAAGTGTCGCGGACCGCAATGGTCCAGAGCTTAG CAGGATTAACTGGCCAAGATCGCACAACAAATTTCACTA TTCCCACA TTAACTTCTTGGCGAGCCCTACTGGGCCAAGTGCTGTGGGTGTGTTGCCAACCCTTTTCTTTGCAGAGTGCGTAAATCACAATGAAGAAAGCGACCGTGCCAGGAAGAACA ATTGCTACCCTGTTGTC GTGCCA CCAACAAATGCTGAGAAGGTCCGGTGCTTCTACTG TGAGTATAAAGGCATTAATATCATTCACCCGGCTGATGGGAACTACCA TGGGTGCGACACAGACTTCGAGAAGATGGCACGCCGGAAGCACGTTTTGACCAATAGCATCGAGAGCGTCTTCAACA ATGGCCTCTTGGTCTCTAATTTCAGGGGTGCGGTGCAAGAAGATTTCTTCTACTTTGACCATGCCAGGGACCATGCCAAGGGGCCATCATCTTGTTCAGATGGTTAAAAATTCATCACAACATCAGACGTGGTCGCGTCCTAGTTGCTAGTTTAATCTGTTTGTTGTTTATGATTAATGATGATGCTTGCGCAACTGAGTAGCCCAAATTAGCAGGCAGCGACTAAT TAACTTTGACTCTTATTTATGGTCA C TGGTGTAGGTCTGATGGCAGCATTTTAAGTTTGTGTTGATACTGAAATATTGGATGTGTTTTTC ] [+] EMBL CB658880 [ GGAGCAGCACCTAGACTTGGACATGATTGGCAGGTGGGCGCTGGTCCGTGCTGAGCGCTATTCCGTTGCTGGCCTCGTCGCTGGCCTCATTGCCTTTGCCGGGGACTACAACCTCTCTGAACTCCAAGCCATCAGGTGCCTCCTCTACGCCAACGGGGACTTTGCCACTGCCATGAGCGTACTGCAGCAAGCACTCCTGAACCAAGAACGTACAATGCTGTCTGACTCCGAGCTGTGCCGCTTCATGGATGTTATGGCTAAGCGCTTGCAGCTGTACAGCGTGATGGCCATTGCTGCTCAGCACCCGAGCGCTGATGGACTACAAGAGTTCCTCATATCTGAGCGCACTCGTGCTATGCTGCCGATGGAGTATCGCAGATTCTCCCGAGAGGATGTGCATTCCGTCATCGAGTCACTGTTACATGAACCACCACCGTCACTTGGGATGCCACCGGAGCTGGTACGTTTGAGCCTGGCGGCAGAACGGACCATTGACCAGTTCCCTGATGCTACCAAGCGCTTCTGGGCTGACATGAGCTCTTTCCACAGCAAGGCGAAGGCCGCATTGGAAAGCTATGTTCTGGAGAACGGGGGCCCTCAGTATGTGATCCATGTCATCTGTGGTGCGAACGAAAGTGTCGCGGACCGCAATGGCCCAGAGCTTAG CAGGATTAACTGGCCAAGATCGCACAACAAATTTCACTA TTCCCACA TTAACTTCTTGGCGAGCCCTACTGGGCCAAGTGCTGTGGGTGTGTTGCCAACCCTTTTCTTTGCAGAGTGCGTANATCACAAT ] [-] EMBL CB658881 [ AGCTCTTTCCACAGCAAGGCGAAGGCCGCATTGGAAAGCTATGTTCTGGAGAACGGGGGCCCTCAGTATGTGATCCATGTCATCTGTGGTGCGAACGAAAGTGTCGCGGACCGCAATGGCCCAGAGCTTAG CAGGATTAACTGGCCAAGATCGCACAACAAATTTCACTA TTCCCACA TTAACTTCTTGGCGAGCCCTACTGGGCCAAGTGCTGTGGGTGTGTTGCCAACCCTTTTCTTTGCAGAGTGCGTAAATCACAATGAAGAAAGCGACCGTGCCAGGAAGAACA ATTGCTACCCTGTTGTC GTGCCA CCAACAAATGCTGAGAAGGTCCGGTGCTTCTACTG TGAGTATAAAGGCATTAATATCATTCACCCGGCTGATGGGAACTACCA TGGGTGCGACACAGACTTCGAGAAGATGGCACGCCGGAAGCACGTTTTGACCAATAGCATCGAGAGCGTCTTCAACA ATGGCCTCTTGGTCTCTAATTTCAGGGGTGCGGTGCAAGAAGATTTCTTCTACTTTGACCATGCCAGGGACCATGCCAAGGGGCCATCATCTTGTTCAGATGGTTAAAAATTCATCACAACATCAGACGTGGTCGCGTCCTAGTTGCTAGTTTAATCTGTTTGTTGTTTATGATTAATGATGATGCTTGCGCAACTGAGTAGCCCAAATTAGCAGGCAGCGACTAAT TAACTTTGACTCTTATTTATGGTCA C TGGTGTAGGTCTGATGGCAGCATTTTAAGTTTGTGTTGATACTGAAATATTGGATG ] [+] EMBL BQ908521 [ CGAAAGTGTCGCGGACCGCAATGGCCCAGAGCTTAGCCAGGATTAACTGGCCAAGATCGCACAACCAATTTCACTATTTCCCACAGTTAACTTCTTGGCGAGCCCTACTGGGCCAAGTGCTGTGGGTGTGTTGCCAACCCTTTTCTTTGCAGAGTGCGTAAATCACNATGAAGAAAGCGACCGTGCCAGGAAGAACACATTGCTACCCTGTTGTC GTGCCA CCAACAAATGCTGAGAAGGTCCGGTGCTTCTACTG TGAGTATAAAGGCATTAATATCATTCACCCGGCTGATGGGAACTACCA TGGGTGCGACACAGACTTCGAGAAGATGGCACGCCGGAAGCACGTTTTGACCCATAGCATCGAGAGCGTCTTCAACA ATGGCCTCTGGGTCTCTAATTTCAGGGGTGCGGTGCAAGAAGATTTCTTCTACTTTGACCATGCCAGGGACCATGCCAAGGGGCCATCATCTTGTTCAGATGGTTAAAAATTCATCACAACATCAGACGTGGTCGCGTCCTAGTTGCTAGTCTAATCTGTTTGTTGTTTATGATTAATGATGATGCTTGCGCAACTGAGTAGCCCCAATTAGCAGGCAGCGACTAAT TAACTTTGACTCTTATTTATGGTCA C TGGTGTAGGTCTGATGGCAGCATTTTAAGTTTGTGTTGATACTGAAAaaaaaaa ] [-] EMBL CB685251 [ AGAGCTTAG CAGGATTAACTGGCCAAGATCGCACAACAAATTTCACTA TTCCCACA TTAACTTCTTGGCGAGCCCTACTGGGCCAAGTGCTGTGGGTGTGTTGCCAACCCTTTTCTTTGCAGAGTGCGTAAATCACAATGAAGAAAGCGACCGTGCCAGGAAGAACA ATTGCTACCCTGTTGTC GTGCCA CCAACAAATGCTGAGAAGGTCCGGTGCTTCTACTG TGAGTATAAAGGCATTAATATCATTCACCCGGCTGATGGGAACTACCA TGGGTGCGACACAGACTTCGAGAAGATGGCACGCCGGAAGCACGTTTTGACCAATAGCATCGAGAGCGTCTTCAACA ATGGCCTCTTGGTCTCTAATTTCAGGGGTGCGGTGCAAGAAGATTTCTTTTACTTTGACCATGCCAGGGACCATGCCAAGGGGCCATCATCTTGTTCAGATGGTTAAAAATTCATCACAACATCAGACGTGGTCGCGTCCTAGTTGCTAGTTTAATCTGTTTGTTGTTTATGATTAATGATGATGCTTGCGCAACTGAGTAGCCCAAATTAGCAGGCAGCGACTAAT TAACTTTGACTCTTATTTATGGTCA C TGGTGTAGGTCTGATGGCAGCATTTTAAGTTTGTGTTGATACTGAAATATTGGATGTGTTTTTCTAAAActttaa ] [+] EMBL BM422036 [ ACA ATTGCTACCCTGTTGTCGGTGCCACCCAACAAATGCTGAGAAGGTCCGGTGCTTCTACTGTTGAGTATAAAGGCATTAATATCATTCACCCGGCTGATGGGAACTACCACTGGGTGCGACACAGACTTCGAGAAGATGGCACGCCGGAAGCACGTTTTGACCCATAGCATCGAGAGCGTCTTCAACANATGGCCTCTGGGTCTCTAATTTCAGGGGTGCGGTGCAAGAAGATTTCTTCTACTTTGACCATGCCAGGGACCATGCCAAGGGGCCATCATCTTGTTCAGATGGTT AAATTCATCACAACATCAGACGTGGTCGCGTCCTAGTTGCTAGTCTAATCTGTTTGTTGTTTATGATTAATGATGATGCTTGCGCAACTGAGTAGCCCCAATTAGCAGGCAGCGACTAAT TAACTTTGACTCTTATTTATGGTCACC TGGTGTAGGTCTGATGNCANCNTTTTAAGTTTGTGTTGATACTGAAATATTGGATGTGTTTTTCTAAATGTCGCATGCTGGCTACTCTGAAAAAAAAAA ] [+] EMBL BQ907570 [ CA ATTGCTACCCTGTTGTC GTGCCA CC ACAAATGCTGAGAAGGTCCGGTGCTTCTACTG TGAGTATAAAGGCATTAATATCATTCACCCGGCTGATGGGAACTACCA TGGGTGCGACACAGACTTCGAGAAGATGGCACGCCGGAAGCACGTTTTGACCAATAGCATCGAGAGCGTCTTCAACA ATGGCCTCTGGGTCTCTAATTTCAGGGGTGCGGTGCAAGAAGATTTCTTCTACTTTGACCATGCCAGGGACCATGCCAAGGGGCCATCATCTTGTTCAGATGGTTAAAAATTCATCACAACATCAGACGTGGTCGCGTCCTAGTTGCTAGTCTAATCTGTTTGTTGTTTATGATTAATGATGATGCTTGCGCAACTGAGTAGCCCAAATTAGCAGGCAGCGACNAATGTAACTTTGACTCTTATTTATGGTCA CNNGGTGTAGGTCTGATGCCAGCATTTTAAGTTTGTGTTGATACGGAAATATGGGATGTGTTTTTCTAAAAaa ] [+] EMBL BM038516 [ TATAAA GCATTAATATCATTCACCC GCTGATGGGAACTACCA T GGTGCGACACAGACTTCGAGAAGATGGCACGCCGGAAGCACGTTTTGACCCATAGCATCGAGAGCGTCTTCAACA ATGGCCTCTGGGTCTCTAATTTCAGGGGTGCGGTGCAAGAAGATTTCTTCTACTTTGACCATGCCAGGGACCATGCC AGGGGCCATCATCTTGTTCAGATGGTTAAAAATTCATCAC ACATCAGACGTGGTCGCGTCCTAGTTGCTAGTCTAATCTGTTTGTTGTTTATGATTAATGATGATGCTTGCGCAACTGAGTAGCCCCAATTAGCAGGCAGCGACTAAT TAACTTTGACTCTTATTTATGGTCACC TGGTGTAGGTCTGATGGCAGCATTTTAAGTTTGTGTTGATACTGAAATATTGGATGTGTTTTTCTAAATGTCGCATGCTGGCTACTCTGAAATTTCAGCTGTTTCTATTTTTCTGTTTAAAAAAAAAAA] [+] EMBL CB683030 [ ACTTCCATAAGATGGCACGCCGGAAGCACGTTTTGACCAATAGCATCGAGAGCGTCTTCAACA ATGGCCTCTTGGTCTCTAATTTCAGGGGTGCGGTGCAAGAAGATTTCTTCTACTTTGACCATGCCAGGGACCATGCCAAGGGGCCATCATCTTGTTCAGATGGTTAAAAATTCATCACAACATCAGACGTGGTCGCGTCCTAGTTGCTAGTTTAATCTGTTTGTTGTTTATGATTAATGATGATGCTTGCGCAACTGAGTAGCCCAAATTAGCAGGCAGCGACTAAT TAACTTTGACTCTTATTTATGGTCA C TGGTGTAGGTCTGATGGCAGCATTTTAAGTTTGTGTTGATACTGAAATATTGGAT ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||